data_2D1K # _model_server_result.job_id dLlDy3LrXVQ9fCjWVFaXLQ _model_server_result.datetime_utc '2025-08-31 07:55:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2d1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1274}' # _entry.id 2D1K # _exptl.entry_id 2D1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2D1K _cell.length_a 42.093 _cell.length_b 75.487 _cell.length_c 228.991 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG D 270 NAG 4 n D NAG 2 D 2 NAG D 271 NAG 4 n D BMA 3 D 3 BMA D 272 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 101 B CYS 101 1_555 B SG CYS 104 B CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 173 B CYS 173 1_555 B SG CYS 209 B CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? covale ? covale1 A C GLU 72 A GLU 72 1_555 A N HIC 73 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C HIC 73 A HIC 73 1_555 A N GLY 74 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale3 B ND2 ASN 18 B ASN 18 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale5 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? metalc ? metalc1 F O2G ATP . A ATP 1380 1_555 E CA CA . A CA 1381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc2 F O3G ATP . A ATP 1380 1_555 E CA CA . A CA 1381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.264 ? metalc ? metalc3 F O1B ATP . A ATP 1380 1_555 E CA CA . A CA 1381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc4 E CA CA . A CA 1381 1_555 I O HOH . A HOH 1385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc5 E CA CA . A CA 1381 1_555 I O HOH . A HOH 1386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc6 B OD2 ASP 172 B ASP 172 1_555 H MG MG . B MG 1274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc7 B O ASP 198 B ASP 198 1_555 H MG MG . B MG 1274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc8 B OD1 ASP 201 B ASP 201 1_555 G CA CA . B CA 1273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc9 B OD2 ASP 201 B ASP 201 1_555 G CA CA . B CA 1273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc10 B OG1 THR 203 B THR 203 1_555 G CA CA . B CA 1273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc11 B O THR 203 B THR 203 1_555 G CA CA . B CA 1273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc12 B O THR 205 B THR 205 1_555 G CA CA . B CA 1273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc13 B O THR 207 B THR 207 1_555 G CA CA . B CA 1273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc14 G CA CA . B CA 1273 1_555 J O HOH . B HOH 1277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc15 G CA CA . B CA 1273 1_555 J O HOH . B HOH 1281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc16 H MG MG . B MG 1274 1_555 J O HOH . B HOH 1276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc17 H MG MG . B MG 1274 1_555 J O HOH . B HOH 1289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2D1K _atom_sites.fract_transf_matrix[1][1] 0.023757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013247 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 CA A 1 1381 1381 CA CA . F 6 ATP A 1 1380 1380 ATP ATP . G 5 CA B 1 1273 1273 CA CA . H 7 MG B 1 1274 1274 MG MG . I 8 HOH A 1 1382 1 HOH HOH . I 8 HOH A 2 1383 2 HOH HOH . I 8 HOH A 3 1384 3 HOH HOH . I 8 HOH A 4 1385 6 HOH HOH . I 8 HOH A 5 1386 7 HOH HOH . I 8 HOH A 6 1387 9 HOH HOH . I 8 HOH A 7 1388 12 HOH HOH . I 8 HOH A 8 1389 14 HOH HOH . I 8 HOH A 9 1390 16 HOH HOH . I 8 HOH A 10 1391 17 HOH HOH . I 8 HOH A 11 1392 27 HOH HOH . I 8 HOH A 12 1393 39 HOH HOH . I 8 HOH A 13 1394 49 HOH HOH . I 8 HOH A 14 1395 50 HOH HOH . I 8 HOH A 15 1396 51 HOH HOH . I 8 HOH A 16 1397 52 HOH HOH . I 8 HOH A 17 1398 53 HOH HOH . I 8 HOH A 18 1399 54 HOH HOH . I 8 HOH A 19 1400 55 HOH HOH . I 8 HOH A 20 1401 63 HOH HOH . I 8 HOH A 21 1402 66 HOH HOH . I 8 HOH A 22 1403 67 HOH HOH . I 8 HOH A 23 1404 72 HOH HOH . I 8 HOH A 24 1405 78 HOH HOH . I 8 HOH A 25 1406 79 HOH HOH . I 8 HOH A 26 1407 80 HOH HOH . I 8 HOH A 27 1408 81 HOH HOH . I 8 HOH A 28 1409 82 HOH HOH . I 8 HOH A 29 1410 83 HOH HOH . I 8 HOH A 30 1411 85 HOH HOH . I 8 HOH A 31 1412 88 HOH HOH . I 8 HOH A 32 1413 89 HOH HOH . I 8 HOH A 33 1414 95 HOH HOH . I 8 HOH A 34 1415 96 HOH HOH . J 8 HOH B 1 1275 4 HOH HOH . J 8 HOH B 2 1276 5 HOH HOH . J 8 HOH B 3 1277 8 HOH HOH . J 8 HOH B 4 1278 10 HOH HOH . J 8 HOH B 5 1279 11 HOH HOH . J 8 HOH B 6 1280 13 HOH HOH . J 8 HOH B 7 1281 15 HOH HOH . J 8 HOH B 8 1282 18 HOH HOH . J 8 HOH B 9 1283 19 HOH HOH . J 8 HOH B 10 1284 20 HOH HOH . J 8 HOH B 11 1285 21 HOH HOH . J 8 HOH B 12 1286 22 HOH HOH . J 8 HOH B 13 1287 23 HOH HOH . J 8 HOH B 14 1288 24 HOH HOH . J 8 HOH B 15 1289 25 HOH HOH . J 8 HOH B 16 1290 26 HOH HOH . J 8 HOH B 17 1291 28 HOH HOH . J 8 HOH B 18 1292 29 HOH HOH . J 8 HOH B 19 1293 30 HOH HOH . J 8 HOH B 20 1294 31 HOH HOH . J 8 HOH B 21 1295 32 HOH HOH . J 8 HOH B 22 1296 33 HOH HOH . J 8 HOH B 23 1297 34 HOH HOH . J 8 HOH B 24 1298 35 HOH HOH . J 8 HOH B 25 1299 36 HOH HOH . J 8 HOH B 26 1300 37 HOH HOH . J 8 HOH B 27 1301 38 HOH HOH . J 8 HOH B 28 1302 40 HOH HOH . J 8 HOH B 29 1303 41 HOH HOH . J 8 HOH B 30 1304 42 HOH HOH . J 8 HOH B 31 1305 43 HOH HOH . J 8 HOH B 32 1306 44 HOH HOH . J 8 HOH B 33 1307 45 HOH HOH . J 8 HOH B 34 1308 46 HOH HOH . J 8 HOH B 35 1309 47 HOH HOH . J 8 HOH B 36 1310 48 HOH HOH . J 8 HOH B 37 1311 56 HOH HOH . J 8 HOH B 38 1312 57 HOH HOH . J 8 HOH B 39 1313 58 HOH HOH . J 8 HOH B 40 1314 59 HOH HOH . J 8 HOH B 41 1315 60 HOH HOH . J 8 HOH B 42 1316 61 HOH HOH . J 8 HOH B 43 1317 62 HOH HOH . J 8 HOH B 44 1318 64 HOH HOH . J 8 HOH B 45 1319 65 HOH HOH . J 8 HOH B 46 1320 68 HOH HOH . J 8 HOH B 47 1321 69 HOH HOH . J 8 HOH B 48 1322 70 HOH HOH . J 8 HOH B 49 1323 71 HOH HOH . J 8 HOH B 50 1324 73 HOH HOH . J 8 HOH B 51 1325 75 HOH HOH . J 8 HOH B 52 1326 76 HOH HOH . J 8 HOH B 53 1327 77 HOH HOH . J 8 HOH B 54 1328 84 HOH HOH . J 8 HOH B 55 1329 86 HOH HOH . J 8 HOH B 56 1330 87 HOH HOH . J 8 HOH B 57 1331 90 HOH HOH . J 8 HOH B 58 1332 91 HOH HOH . J 8 HOH B 59 1333 92 HOH HOH . J 8 HOH B 60 1334 93 HOH HOH . J 8 HOH B 61 1335 94 HOH HOH . J 8 HOH B 62 1336 97 HOH HOH . J 8 HOH B 63 1337 98 HOH HOH . J 8 HOH B 64 1338 99 HOH HOH . J 8 HOH B 65 1339 100 HOH HOH . J 8 HOH B 66 1340 101 HOH HOH . J 8 HOH B 67 1341 102 HOH HOH . J 8 HOH B 68 1342 103 HOH HOH . K 8 HOH C 1 74 74 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 7 _atom_site.Cartn_x 15.886 _atom_site.Cartn_y 56.272 _atom_site.Cartn_z 115.345 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1274 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #