data_2D1N
#
_model_server_result.job_id            0GxdDjQxtSrTTqK9fcp_1Q 
_model_server_result.datetime_utc      '2024-12-26 22:14:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2d1n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":284}' 
#
_entry.id    2D1N 
#
_exptl.entry_id    2D1N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2D1N 
_cell.length_a            96.47 
_cell.length_b            96.47 
_cell.length_c            67.52 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2D1N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,Q 1 1 
B,K,L,M,N,O,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 Q O HOH . A HOH 7 1_555 H ZN ZN . A ZN 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? 
metalc ? metalc2 Q O HOH . A HOH 8 1_555 I ZN ZN . A ZN 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? 
metalc ? metalc3 Q O HOH . A HOH 11 1_555 F CA CA . A CA 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? 
metalc ? metalc4 Q O HOH . A HOH 41 1_555 F CA CA . A CA 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc5 A OD2 ASP 25 A ASP 128 1_555 G CA CA . A CA 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc6 A OD1 ASP 25 A ASP 128 1_555 G CA CA . A CA 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.312 ? 
metalc ? metalc7 A OE1 GLU 32 A GLU 135 1_555 H ZN ZN . A ZN 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? 
metalc ? metalc8 A NE2 HIS 54 A HIS 157 1_555 I ZN ZN . A ZN 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc9 A O ASP 59 A ASP 162 1_555 F CA CA . A CA 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc10 A NE2 HIS 69 A HIS 172 1_555 D ZN ZN . A ZN 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
metalc ? metalc11 A OD2 ASP 71 A ASP 174 1_555 D ZN ZN . A ZN 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
metalc ? metalc12 A OD1 ASP 76 A ASP 179 1_555 E CA CA . A CA 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? 
metalc ? metalc13 A O GLY 77 A GLY 180 1_555 E CA CA . A CA 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc14 A O SER 79 A SER 182 1_555 E CA CA . A CA 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc15 A O LEU 81 A LEU 184 1_555 E CA CA . A CA 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc16 A NE2 HIS 84 A HIS 187 1_555 D ZN ZN . A ZN 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc17 A O ASN 91 A ASN 194 1_555 F CA CA . A CA 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc18 A O GLY 93 A GLY 196 1_555 F CA CA . A CA 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc19 A OD1 ASP 95 A ASP 198 1_555 F CA CA . A CA 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? 
metalc ? metalc20 A ND1 HIS 97 A HIS 200 1_555 D ZN ZN . A ZN 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? 
metalc ? metalc21 A OD2 ASP 99 A ASP 202 1_555 E CA CA . A CA 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc22 A OD2 ASP 100 A ASP 203 1_555 G CA CA . A CA 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc23 A O ASP 100 A ASP 203 1_555 G CA CA . A CA 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? 
metalc ? metalc24 A OE2 GLU 102 A GLU 205 1_555 E CA CA . A CA 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc25 A O GLU 102 A GLU 205 1_555 G CA CA . A CA 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc26 A NE2 HIS 119 A HIS 222 1_555 C ZN ZN . A ZN 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc27 A NE2 HIS 123 A HIS 226 1_555 C ZN ZN . A ZN 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc28 A NE2 HIS 129 A HIS 232 1_555 C ZN ZN . A ZN 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc29 C ZN ZN . A ZN 270 1_555 J O32 FA4 . A FA4 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
metalc ? metalc30 C ZN ZN . A ZN 270 1_555 J O33 FA4 . A FA4 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc31 H ZN ZN . A ZN 285 1_555 B NE2 HIS 54 B HIS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc32 I ZN ZN . A ZN 286 1_555 B OE1 GLU 32 B GLU 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? 
metalc ? metalc33 R O HOH . B HOH 18 1_555 N CA CA . B CA 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.091 ? 
metalc ? metalc34 R O HOH . B HOH 19 1_555 N CA CA . B CA 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc35 B OD2 ASP 25 B ASP 128 1_555 O CA CA . B CA 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc36 B OD1 ASP 25 B ASP 128 1_555 O CA CA . B CA 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.084 ? 
metalc ? metalc37 B O ASP 59 B ASP 162 1_555 N CA CA . B CA 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc38 B NE2 HIS 69 B HIS 172 1_555 L ZN ZN . B ZN 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
metalc ? metalc39 B OD2 ASP 71 B ASP 174 1_555 L ZN ZN . B ZN 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc40 B OD1 ASP 76 B ASP 179 1_555 M CA CA . B CA 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc41 B O GLY 77 B GLY 180 1_555 M CA CA . B CA 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc42 B O SER 79 B SER 182 1_555 M CA CA . B CA 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc43 B O LEU 81 B LEU 184 1_555 M CA CA . B CA 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc44 B NE2 HIS 84 B HIS 187 1_555 L ZN ZN . B ZN 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc45 B O ASN 91 B ASN 194 1_555 N CA CA . B CA 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc46 B O GLY 93 B GLY 196 1_555 N CA CA . B CA 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc47 B OD1 ASP 95 B ASP 198 1_555 N CA CA . B CA 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc48 B ND1 HIS 97 B HIS 200 1_555 L ZN ZN . B ZN 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc49 B OD2 ASP 99 B ASP 202 1_555 M CA CA . B CA 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc50 B O ASP 100 B ASP 203 1_555 O CA CA . B CA 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc51 B OD2 ASP 100 B ASP 203 1_555 O CA CA . B CA 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? 
metalc ? metalc52 B OE2 GLU 102 B GLU 205 1_555 M CA CA . B CA 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc53 B O GLU 102 B GLU 205 1_555 O CA CA . B CA 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? 
metalc ? metalc54 B NE2 HIS 119 B HIS 222 1_555 K ZN ZN . B ZN 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc55 B NE2 HIS 123 B HIS 226 1_555 K ZN ZN . B ZN 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc56 B NE2 HIS 129 B HIS 232 1_555 K ZN ZN . B ZN 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc57 K ZN ZN . B ZN 280 1_555 P O33 FA4 . B FA4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? 
metalc ? metalc58 K ZN ZN . B ZN 280 1_555 P O32 FA4 . B FA4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc59 K ZN ZN . B ZN 280 1_555 P N22 FA4 . B FA4 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2D1N 
_atom_sites.fract_transf_matrix[1][1]    0.010366 
_atom_sites.fract_transf_matrix[1][2]    0.005985 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01197 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01481 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 270 270 ZN ZN2 . 
D 2 ZN A 1 271 271 ZN ZN2 . 
E 3 CA A 1 272 272 CA CA2 . 
F 3 CA A 1 273 273 CA CA2 . 
G 3 CA A 1 274 274 CA CA2 . 
H 2 ZN A 1 285 285 ZN ZN2 . 
I 2 ZN A 1 286 286 ZN ZN2 . 
J 4 FA4 A 1 1001 1 FA4 FA2 . 
K 2 ZN B 1 280 280 ZN ZN2 . 
L 2 ZN B 1 281 281 ZN ZN2 . 
M 3 CA B 1 282 282 CA CA2 . 
N 3 CA B 1 283 283 CA CA2 . 
O 3 CA B 1 284 284 CA CA2 . 
P 4 FA4 B 1 1002 2 FA4 FA2 . 
Q 5 HOH A 1 1 1 HOH HOH . 
Q 5 HOH A 2 3 3 HOH HOH . 
Q 5 HOH A 3 4 4 HOH HOH . 
Q 5 HOH A 4 7 7 HOH HOH . 
Q 5 HOH A 5 8 8 HOH HOH . 
Q 5 HOH A 6 9 9 HOH HOH . 
Q 5 HOH A 7 10 10 HOH HOH . 
Q 5 HOH A 8 11 11 HOH HOH . 
Q 5 HOH A 9 12 12 HOH HOH . 
Q 5 HOH A 10 13 13 HOH HOH . 
Q 5 HOH A 11 22 22 HOH HOH . 
Q 5 HOH A 12 23 23 HOH HOH . 
Q 5 HOH A 13 26 26 HOH HOH . 
Q 5 HOH A 14 28 28 HOH HOH . 
Q 5 HOH A 15 29 29 HOH HOH . 
Q 5 HOH A 16 30 30 HOH HOH . 
Q 5 HOH A 17 31 31 HOH HOH . 
Q 5 HOH A 18 39 39 HOH HOH . 
Q 5 HOH A 19 41 41 HOH HOH . 
Q 5 HOH A 20 43 43 HOH HOH . 
Q 5 HOH A 21 44 44 HOH HOH . 
Q 5 HOH A 22 45 45 HOH HOH . 
Q 5 HOH A 23 46 46 HOH HOH . 
Q 5 HOH A 24 47 47 HOH HOH . 
Q 5 HOH A 25 48 48 HOH HOH . 
Q 5 HOH A 26 49 49 HOH HOH . 
R 5 HOH B 1 2 2 HOH HOH . 
R 5 HOH B 2 5 5 HOH HOH . 
R 5 HOH B 3 6 6 HOH HOH . 
R 5 HOH B 4 14 14 HOH HOH . 
R 5 HOH B 5 15 15 HOH HOH . 
R 5 HOH B 6 16 16 HOH HOH . 
R 5 HOH B 7 17 17 HOH HOH . 
R 5 HOH B 8 18 18 HOH HOH . 
R 5 HOH B 9 19 19 HOH HOH . 
R 5 HOH B 10 20 20 HOH HOH . 
R 5 HOH B 11 21 21 HOH HOH . 
R 5 HOH B 12 24 24 HOH HOH . 
R 5 HOH B 13 25 25 HOH HOH . 
R 5 HOH B 14 27 27 HOH HOH . 
R 5 HOH B 15 32 32 HOH HOH . 
R 5 HOH B 16 33 33 HOH HOH . 
R 5 HOH B 17 34 34 HOH HOH . 
R 5 HOH B 18 35 35 HOH HOH . 
R 5 HOH B 19 36 36 HOH HOH . 
R 5 HOH B 20 37 37 HOH HOH . 
R 5 HOH B 21 38 38 HOH HOH . 
R 5 HOH B 22 40 40 HOH HOH . 
R 5 HOH B 23 42 42 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         O 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -17.348 
_atom_site.Cartn_y               44.547 
_atom_site.Cartn_z               -30.425 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        77.56 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           284 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#