data_2D1Q # _model_server_result.job_id 8c4R31CHrfI0KVLzqieRmA _model_server_result.datetime_utc '2024-10-19 10:21:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2d1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 2D1Q # _exptl.entry_id 2D1Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2D1Q _cell.length_a 57.78 _cell.length_b 181.975 _cell.length_c 53.566 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 62 A SER 62 1_555 A N CSO 63 A CSO 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 A C CSO 63 A CSO 63 1_555 A N CSO 64 A CSO 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C CSO 64 A CSO 64 1_555 A N LEU 65 A LEU 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 2D1Q _atom_sites.fract_transf_matrix[1][1] 0.017307 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005495 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 1001 1001 AMP AMP . C 3 HOH A 1 1002 1 HOH HOH . C 3 HOH A 2 1003 2 HOH HOH . C 3 HOH A 3 1004 3 HOH HOH . C 3 HOH A 4 1005 4 HOH HOH . C 3 HOH A 5 1006 5 HOH HOH . C 3 HOH A 6 1007 6 HOH HOH . C 3 HOH A 7 1008 7 HOH HOH . C 3 HOH A 8 1009 8 HOH HOH . C 3 HOH A 9 1010 9 HOH HOH . C 3 HOH A 10 1011 10 HOH HOH . C 3 HOH A 11 1012 11 HOH HOH . C 3 HOH A 12 1013 12 HOH HOH . C 3 HOH A 13 1014 13 HOH HOH . C 3 HOH A 14 1015 14 HOH HOH . C 3 HOH A 15 1016 15 HOH HOH . C 3 HOH A 16 1017 16 HOH HOH . C 3 HOH A 17 1018 17 HOH HOH . C 3 HOH A 18 1019 18 HOH HOH . C 3 HOH A 19 1020 19 HOH HOH . C 3 HOH A 20 1021 20 HOH HOH . C 3 HOH A 21 1022 21 HOH HOH . C 3 HOH A 22 1023 22 HOH HOH . C 3 HOH A 23 1024 23 HOH HOH . C 3 HOH A 24 1025 24 HOH HOH . C 3 HOH A 25 1026 25 HOH HOH . C 3 HOH A 26 1027 26 HOH HOH . C 3 HOH A 27 1028 27 HOH HOH . C 3 HOH A 28 1029 28 HOH HOH . C 3 HOH A 29 1030 29 HOH HOH . C 3 HOH A 30 1031 30 HOH HOH . C 3 HOH A 31 1032 31 HOH HOH . C 3 HOH A 32 1033 32 HOH HOH . C 3 HOH A 33 1034 33 HOH HOH . C 3 HOH A 34 1035 34 HOH HOH . C 3 HOH A 35 1036 35 HOH HOH . C 3 HOH A 36 1037 36 HOH HOH . C 3 HOH A 37 1038 37 HOH HOH . C 3 HOH A 38 1039 38 HOH HOH . C 3 HOH A 39 1040 39 HOH HOH . C 3 HOH A 40 1041 40 HOH HOH . C 3 HOH A 41 1042 41 HOH HOH . C 3 HOH A 42 1043 42 HOH HOH . C 3 HOH A 43 1044 43 HOH HOH . C 3 HOH A 44 1045 44 HOH HOH . C 3 HOH A 45 1046 45 HOH HOH . C 3 HOH A 46 1047 46 HOH HOH . C 3 HOH A 47 1048 47 HOH HOH . C 3 HOH A 48 1049 48 HOH HOH . C 3 HOH A 49 1050 49 HOH HOH . C 3 HOH A 50 1051 50 HOH HOH . C 3 HOH A 51 1052 51 HOH HOH . C 3 HOH A 52 1053 52 HOH HOH . C 3 HOH A 53 1054 53 HOH HOH . C 3 HOH A 54 1055 54 HOH HOH . C 3 HOH A 55 1056 55 HOH HOH . C 3 HOH A 56 1057 56 HOH HOH . C 3 HOH A 57 1058 57 HOH HOH . C 3 HOH A 58 1059 58 HOH HOH . C 3 HOH A 59 1060 59 HOH HOH . C 3 HOH A 60 1061 60 HOH HOH . C 3 HOH A 61 1062 61 HOH HOH . C 3 HOH A 62 1063 62 HOH HOH . C 3 HOH A 63 1064 63 HOH HOH . C 3 HOH A 64 1065 64 HOH HOH . C 3 HOH A 65 1066 65 HOH HOH . C 3 HOH A 66 1067 66 HOH HOH . C 3 HOH A 67 1068 67 HOH HOH . C 3 HOH A 68 1069 68 HOH HOH . C 3 HOH A 69 1070 69 HOH HOH . C 3 HOH A 70 1071 70 HOH HOH . C 3 HOH A 71 1072 71 HOH HOH . C 3 HOH A 72 1073 72 HOH HOH . C 3 HOH A 73 1074 73 HOH HOH . C 3 HOH A 74 1075 74 HOH HOH . C 3 HOH A 75 1076 75 HOH HOH . C 3 HOH A 76 1077 76 HOH HOH . C 3 HOH A 77 1078 77 HOH HOH . C 3 HOH A 78 1079 78 HOH HOH . C 3 HOH A 79 1080 79 HOH HOH . C 3 HOH A 80 1081 80 HOH HOH . C 3 HOH A 81 1082 81 HOH HOH . C 3 HOH A 82 1083 82 HOH HOH . C 3 HOH A 83 1084 83 HOH HOH . C 3 HOH A 84 1085 84 HOH HOH . C 3 HOH A 85 1086 86 HOH HOH . C 3 HOH A 86 1087 87 HOH HOH . C 3 HOH A 87 1088 88 HOH HOH . C 3 HOH A 88 1089 89 HOH HOH . C 3 HOH A 89 1090 90 HOH HOH . C 3 HOH A 90 1091 91 HOH HOH . C 3 HOH A 91 1092 92 HOH HOH . C 3 HOH A 92 1093 93 HOH HOH . C 3 HOH A 93 1094 94 HOH HOH . C 3 HOH A 94 1095 95 HOH HOH . C 3 HOH A 95 1096 96 HOH HOH . C 3 HOH A 96 1097 97 HOH HOH . C 3 HOH A 97 1098 98 HOH HOH . C 3 HOH A 98 1099 99 HOH HOH . C 3 HOH A 99 1100 100 HOH HOH . C 3 HOH A 100 1101 101 HOH HOH . C 3 HOH A 101 1102 102 HOH HOH . C 3 HOH A 102 1103 103 HOH HOH . C 3 HOH A 103 1104 104 HOH HOH . C 3 HOH A 104 1105 105 HOH HOH . C 3 HOH A 105 1106 106 HOH HOH . C 3 HOH A 106 1107 107 HOH HOH . C 3 HOH A 107 1108 108 HOH HOH . C 3 HOH A 108 1109 109 HOH HOH . C 3 HOH A 109 1110 110 HOH HOH . C 3 HOH A 110 1111 111 HOH HOH . C 3 HOH A 111 1112 112 HOH HOH . C 3 HOH A 112 1113 113 HOH HOH . C 3 HOH A 113 1114 114 HOH HOH . C 3 HOH A 114 1115 115 HOH HOH . C 3 HOH A 115 1116 116 HOH HOH . C 3 HOH A 116 1117 117 HOH HOH . C 3 HOH A 117 1118 118 HOH HOH . C 3 HOH A 118 1119 119 HOH HOH . C 3 HOH A 119 1120 120 HOH HOH . C 3 HOH A 120 1121 121 HOH HOH . C 3 HOH A 121 1122 122 HOH HOH . C 3 HOH A 122 1123 123 HOH HOH . C 3 HOH A 123 1124 124 HOH HOH . C 3 HOH A 124 1125 125 HOH HOH . C 3 HOH A 125 1126 126 HOH HOH . C 3 HOH A 126 1127 127 HOH HOH . C 3 HOH A 127 1128 128 HOH HOH . C 3 HOH A 128 1129 129 HOH HOH . C 3 HOH A 129 1130 130 HOH HOH . C 3 HOH A 130 1131 131 HOH HOH . C 3 HOH A 131 1132 132 HOH HOH . C 3 HOH A 132 1133 133 HOH HOH . C 3 HOH A 133 1134 134 HOH HOH . C 3 HOH A 134 1135 135 HOH HOH . C 3 HOH A 135 1136 136 HOH HOH . C 3 HOH A 136 1137 137 HOH HOH . C 3 HOH A 137 1138 138 HOH HOH . C 3 HOH A 138 1139 139 HOH HOH . C 3 HOH A 139 1140 140 HOH HOH . C 3 HOH A 140 1141 141 HOH HOH . C 3 HOH A 141 1142 142 HOH HOH . C 3 HOH A 142 1143 144 HOH HOH . C 3 HOH A 143 1144 145 HOH HOH . C 3 HOH A 144 1145 146 HOH HOH . C 3 HOH A 145 1146 147 HOH HOH . C 3 HOH A 146 1147 148 HOH HOH . C 3 HOH A 147 1148 149 HOH HOH . C 3 HOH A 148 1149 150 HOH HOH . C 3 HOH A 149 1150 151 HOH HOH . C 3 HOH A 150 1151 152 HOH HOH . C 3 HOH A 151 1152 153 HOH HOH . C 3 HOH A 152 1153 154 HOH HOH . C 3 HOH A 153 1154 155 HOH HOH . C 3 HOH A 154 1155 156 HOH HOH . C 3 HOH A 155 1156 157 HOH HOH . C 3 HOH A 156 1157 158 HOH HOH . C 3 HOH A 157 1158 159 HOH HOH . C 3 HOH A 158 1159 160 HOH HOH . C 3 HOH A 159 1160 161 HOH HOH . C 3 HOH A 160 1161 162 HOH HOH . C 3 HOH A 161 1162 163 HOH HOH . C 3 HOH A 162 1163 164 HOH HOH . C 3 HOH A 163 1164 165 HOH HOH . C 3 HOH A 164 1165 166 HOH HOH . C 3 HOH A 165 1166 167 HOH HOH . C 3 HOH A 166 1167 168 HOH HOH . C 3 HOH A 167 1168 169 HOH HOH . C 3 HOH A 168 1169 170 HOH HOH . C 3 HOH A 169 1170 171 HOH HOH . C 3 HOH A 170 1171 172 HOH HOH . C 3 HOH A 171 1172 173 HOH HOH . C 3 HOH A 172 1173 174 HOH HOH . C 3 HOH A 173 1174 175 HOH HOH . C 3 HOH A 174 1175 176 HOH HOH . C 3 HOH A 175 1176 177 HOH HOH . C 3 HOH A 176 1177 178 HOH HOH . C 3 HOH A 177 1178 179 HOH HOH . C 3 HOH A 178 1179 180 HOH HOH . C 3 HOH A 179 1180 181 HOH HOH . C 3 HOH A 180 1181 183 HOH HOH . C 3 HOH A 181 1182 184 HOH HOH . C 3 HOH A 182 1183 185 HOH HOH . C 3 HOH A 183 1184 186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 15.409 28.961 12.444 1 15.77 ? P AMP 1001 A 1 HETATM 2 O O1P AMP . . . B 2 14.352 28.456 11.552 1 19.69 ? O1P AMP 1001 A 1 HETATM 3 O O2P AMP . . . B 2 15.255 30.48 12.519 1 21.21 ? O2P AMP 1001 A 1 HETATM 4 O O3P AMP . . . B 2 15.249 28.376 13.851 1 19.77 ? O3P AMP 1001 A 1 HETATM 5 O O5' AMP . . . B 2 16.867 28.598 11.916 1 14.84 ? O5' AMP 1001 A 1 HETATM 6 C C5' AMP . . . B 2 17.277 29.01 10.638 1 12.03 ? C5' AMP 1001 A 1 HETATM 7 C C4' AMP . . . B 2 18.594 29.75 10.764 1 12.25 ? C4' AMP 1001 A 1 HETATM 8 O O4' AMP . . . B 2 19.598 28.988 11.407 1 10.04 ? O4' AMP 1001 A 1 HETATM 9 C C3' AMP . . . B 2 19.173 30.148 9.41 1 12.1 ? C3' AMP 1001 A 1 HETATM 10 O O3' AMP . . . B 2 18.592 31.358 8.938 1 12.38 ? O3' AMP 1001 A 1 HETATM 11 C C2' AMP . . . B 2 20.626 30.341 9.752 1 9.92 ? C2' AMP 1001 A 1 HETATM 12 O O2' AMP . . . B 2 20.739 31.615 10.34 1 10.07 ? O2' AMP 1001 A 1 HETATM 13 C C1' AMP . . . B 2 20.859 29.282 10.829 1 11.19 ? C1' AMP 1001 A 1 HETATM 14 N N9 AMP . . . B 2 21.445 28.056 10.226 1 12.72 ? N9 AMP 1001 A 1 HETATM 15 C C8 AMP . . . B 2 20.781 26.881 9.944 1 11.98 ? C8 AMP 1001 A 1 HETATM 16 N N7 AMP . . . B 2 21.671 26.01 9.413 1 13.93 ? N7 AMP 1001 A 1 HETATM 17 C C5 AMP . . . B 2 22.886 26.608 9.337 1 13.72 ? C5 AMP 1001 A 1 HETATM 18 C C6 AMP . . . B 2 24.128 26.185 8.866 1 14 ? C6 AMP 1001 A 1 HETATM 19 N N6 AMP . . . B 2 24.289 24.961 8.36 1 13.56 ? N6 AMP 1001 A 1 HETATM 20 N N1 AMP . . . B 2 25.209 27.048 8.919 1 14.29 ? N1 AMP 1001 A 1 HETATM 21 C C2 AMP . . . B 2 25.053 28.317 9.422 1 12.45 ? C2 AMP 1001 A 1 HETATM 22 N N3 AMP . . . B 2 23.815 28.725 9.883 1 13.17 ? N3 AMP 1001 A 1 HETATM 23 C C4 AMP . . . B 2 22.753 27.896 9.838 1 12.48 ? C4 AMP 1001 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #