data_2D25
#
_model_server_result.job_id            c_K4RLy1ixhVmkViEGEANw 
_model_server_result.datetime_utc      '2024-10-18 16:20:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2d25 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":21}' 
#
_entry.id    2D25 
#
_exptl.entry_id    2D25 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2D25 
_cell.length_a            53.77 
_cell.length_b            53.77 
_cell.length_c            34.35 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2D25 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        168 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 6' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A O3' DC 6 A DC 6 1_555 A P 5CM 7 A 5CM 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? 
covale ? covale2 A O3' 5CM 7 A 5CM 7 1_555 A P DT 8 A DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.636 ? 
covale ? covale3 B O3' DC 6 B DC 16 1_555 B P 5CM 7 B 5CM 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? 
covale ? covale4 B O3' 5CM 7 B 5CM 17 1_555 B P DT 8 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? 
metalc ? metalc1 C MG MG . A MG 21 1_555 D O HOH . A HOH 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc2 C MG MG . A MG 21 1_555 D O HOH . A HOH 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? 
metalc ? metalc3 C MG MG . A MG 21 1_555 D O HOH . A HOH 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc4 C MG MG . A MG 21 1_555 D O HOH . A HOH 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc5 C MG MG . A MG 21 1_555 D O HOH . A HOH 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 B N1 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 B O6 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 B N2 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N1 DA 3 A DA 3 1_555 B N3 DT 8 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N6 DA 3 A DA 3 1_555 B O4 DT 8 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N1 DG 4 A DG 4 1_555 B N3 5CM 7 B 5CM 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N2 DG 4 A DG 4 1_555 B O2 5CM 7 B 5CM 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A O6 DG 4 A DG 4 1_555 B N4 5CM 7 B 5CM 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N1 DG 5 A DG 5 1_555 B N3 DC 6 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N2 DG 5 A DG 5 1_555 B O2 DC 6 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A O6 DG 5 A DG 5 1_555 B N4 DC 6 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N3 DC 6 A DC 6 1_555 B N1 DG 5 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N4 DC 6 A DC 6 1_555 B O6 DG 5 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A O2 DC 6 A DC 6 1_555 B N2 DG 5 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A N3 5CM 7 A 5CM 7 1_555 B N1 DG 4 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A N4 5CM 7 A 5CM 7 1_555 B O6 DG 4 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A O2 5CM 7 A 5CM 7 1_555 B N2 DG 4 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 A N3 DT 8 A DT 8 1_555 B N1 DA 3 B DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 A O4 DT 8 A DT 8 1_555 B N6 DA 3 B DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 A N1 DG 9 A DG 9 1_555 B N3 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 A N2 DG 9 A DG 9 1_555 B O2 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 A O6 DG 9 A DG 9 1_555 B N4 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 A N1 DG 10 A DG 10 1_555 B N3 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 A N2 DG 10 A DG 10 1_555 B O2 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 A O6 DG 10 A DG 10 1_555 B N4 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2D25 
_atom_sites.fract_transf_matrix[1][1]    0.0186 
_atom_sites.fract_transf_matrix[1][2]    0.01074 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02147 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02911 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 21 21 MG MO5 . 
D 3 HOH A 1 23 23 HOH HOH . 
D 3 HOH A 2 24 24 HOH HOH . 
D 3 HOH A 3 26 26 HOH HOH . 
D 3 HOH A 4 27 27 HOH HOH . 
D 3 HOH A 5 28 28 HOH HOH . 
D 3 HOH A 6 29 29 HOH HOH . 
D 3 HOH A 7 30 30 HOH HOH . 
D 3 HOH A 8 31 31 HOH HOH . 
D 3 HOH A 9 33 33 HOH HOH . 
D 3 HOH A 10 35 35 HOH HOH . 
D 3 HOH A 11 36 36 HOH HOH . 
D 3 HOH A 12 37 37 HOH HOH . 
D 3 HOH A 13 38 38 HOH HOH . 
D 3 HOH A 14 40 40 HOH HOH . 
D 3 HOH A 15 41 41 HOH HOH . 
D 3 HOH A 16 44 44 HOH HOH . 
D 3 HOH A 17 48 48 HOH HOH . 
D 3 HOH A 18 50 50 HOH HOH . 
D 3 HOH A 19 55 55 HOH HOH . 
D 3 HOH A 20 66 66 HOH HOH . 
D 3 HOH A 21 68 68 HOH HOH . 
D 3 HOH A 22 70 70 HOH HOH . 
D 3 HOH A 23 71 71 HOH HOH . 
D 3 HOH A 24 72 72 HOH HOH . 
D 3 HOH A 25 75 75 HOH HOH . 
D 3 HOH A 26 76 76 HOH HOH . 
D 3 HOH A 27 78 78 HOH HOH . 
D 3 HOH A 28 81 81 HOH HOH . 
D 3 HOH A 29 82 82 HOH HOH . 
D 3 HOH A 30 85 85 HOH HOH . 
D 3 HOH A 31 93 93 HOH HOH . 
D 3 HOH A 32 96 96 HOH HOH . 
D 3 HOH A 33 98 98 HOH HOH . 
D 3 HOH A 34 99 99 HOH HOH . 
D 3 HOH A 35 101 101 HOH HOH . 
D 3 HOH A 36 102 21 HOH MO5 . 
D 3 HOH A 37 103 21 HOH MO5 . 
D 3 HOH A 38 104 21 HOH MO5 . 
D 3 HOH A 39 105 21 HOH MO5 . 
D 3 HOH A 40 106 21 HOH MO5 . 
E 3 HOH B 1 22 22 HOH HOH . 
E 3 HOH B 2 25 25 HOH HOH . 
E 3 HOH B 3 32 32 HOH HOH . 
E 3 HOH B 4 34 34 HOH HOH . 
E 3 HOH B 5 39 39 HOH HOH . 
E 3 HOH B 6 42 42 HOH HOH . 
E 3 HOH B 7 43 43 HOH HOH . 
E 3 HOH B 8 45 45 HOH HOH . 
E 3 HOH B 9 46 46 HOH HOH . 
E 3 HOH B 10 47 47 HOH HOH . 
E 3 HOH B 11 49 49 HOH HOH . 
E 3 HOH B 12 51 51 HOH HOH . 
E 3 HOH B 13 52 52 HOH HOH . 
E 3 HOH B 14 53 53 HOH HOH . 
E 3 HOH B 15 54 54 HOH HOH . 
E 3 HOH B 16 56 56 HOH HOH . 
E 3 HOH B 17 57 57 HOH HOH . 
E 3 HOH B 18 58 58 HOH HOH . 
E 3 HOH B 19 59 59 HOH HOH . 
E 3 HOH B 20 60 60 HOH HOH . 
E 3 HOH B 21 61 61 HOH HOH . 
E 3 HOH B 22 62 62 HOH HOH . 
E 3 HOH B 23 63 63 HOH HOH . 
E 3 HOH B 24 64 64 HOH HOH . 
E 3 HOH B 25 65 65 HOH HOH . 
E 3 HOH B 26 67 67 HOH HOH . 
E 3 HOH B 27 69 69 HOH HOH . 
E 3 HOH B 28 73 73 HOH HOH . 
E 3 HOH B 29 74 74 HOH HOH . 
E 3 HOH B 30 77 77 HOH HOH . 
E 3 HOH B 31 79 79 HOH HOH . 
E 3 HOH B 32 80 80 HOH HOH . 
E 3 HOH B 33 83 83 HOH HOH . 
E 3 HOH B 34 84 84 HOH HOH . 
E 3 HOH B 35 86 86 HOH HOH . 
E 3 HOH B 36 87 87 HOH HOH . 
E 3 HOH B 37 88 88 HOH HOH . 
E 3 HOH B 38 89 89 HOH HOH . 
E 3 HOH B 39 90 90 HOH HOH . 
E 3 HOH B 40 91 91 HOH HOH . 
E 3 HOH B 41 92 92 HOH HOH . 
E 3 HOH B 42 94 94 HOH HOH . 
E 3 HOH B 43 95 95 HOH HOH . 
E 3 HOH B 44 97 97 HOH HOH . 
E 3 HOH B 45 100 100 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               11.625 
_atom_site.Cartn_y               1.611 
_atom_site.Cartn_z               7.914 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        56.13 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           21 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#