data_2D2C # _model_server_result.job_id PpirBm4WBwfndIOIIUu5IQ _model_server_result.datetime_utc '2024-11-05 23:52:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2d2c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":1101}' # _entry.id 2D2C # _exptl.entry_id 2D2C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 536.873 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-CAROTENE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2D2C _cell.length_a 156.587 _cell.length_b 156.587 _cell.length_c 361.786 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D2C _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 Z N N ? 15 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? disulf ? disulf2 L SG CYS 113 Q CYS 113 1_555 L SG CYS 128 Q CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? covale ? covale1 A SG CYS 35 A CYS 35 1_555 S CAB HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? covale ? covale2 C SG CYS 22 C CYS 22 1_555 X CAB HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? covale ? covale3 C SG CYS 25 C CYS 25 1_555 X CAC HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? covale ? covale4 I SG CYS 35 N CYS 35 1_555 CA CAB HEC . N HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? covale ? covale5 K SG CYS 22 P CYS 22 1_555 HA CAB HEM . P HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? covale ? covale6 K SG CYS 25 P CYS 25 1_555 HA CAC HEM . P HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 Q FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 Q FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc5 S FE HEC . A HEC 303 1_555 KA O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc6 C N TYR 1 C TYR 1 1_555 X FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc7 D SG CYS 108 D CYS 108 1_555 Y FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc8 D ND1 HIS 110 D HIS 110 1_555 Y FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc9 D SG CYS 126 D CYS 126 1_555 Y FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc10 D ND1 HIS 129 D HIS 129 1_555 Y FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc11 I NE2 HIS 86 N HIS 86 1_555 AA FE HEM . N HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc12 I NE2 HIS 100 N HIS 100 1_555 BA FE HEM . N HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc13 I NE2 HIS 187 N HIS 187 1_555 AA FE HEM . N HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc14 I NE2 HIS 202 N HIS 202 1_555 BA FE HEM . N HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc15 CA FE HEC . N HEC 303 1_555 LA O HOH . N HOH 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc16 K N TYR 1 P TYR 1 1_555 HA FE HEM . P HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc17 L SG CYS 108 Q CYS 108 1_555 IA FE1 FES . Q FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc18 L ND1 HIS 110 Q HIS 110 1_555 IA FE2 FES . Q FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc19 L SG CYS 126 Q CYS 126 1_555 IA FE1 FES . Q FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc20 L ND1 HIS 129 Q HIS 129 1_555 IA FE2 FES . Q FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? # _chem_comp.formula 'C40 H56' _chem_comp.formula_weight 536.873 _chem_comp.id BCR _chem_comp.mon_nstd_flag . _chem_comp.name BETA-CAROTENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BCR sing 70 n n C1 C6 BCR sing 71 n n C1 C31 BCR sing 72 n n C1 C32 BCR sing 73 n n C2 C3 BCR sing 74 n n C2 HC21 BCR sing 75 n n C2 HC22 BCR sing 76 n n C3 C4 BCR sing 77 n n C3 HC31 BCR sing 78 n n C3 HC32 BCR sing 79 n n C4 C5 BCR sing 80 n n C4 HC41 BCR sing 81 n n C4 HC42 BCR sing 82 n n C5 C6 BCR doub 83 n n C5 C33 BCR sing 84 n n C6 C7 BCR sing 85 n n C7 C8 BCR doub 86 e n C7 HC7 BCR sing 87 n n C8 C9 BCR sing 88 n n C8 HC8 BCR sing 89 n n C9 C10 BCR doub 90 e n C9 C34 BCR sing 91 n n C10 C11 BCR sing 92 n n C10 H10C BCR sing 93 n n C11 C12 BCR doub 94 e n C11 H11C BCR sing 95 n n C33 H331 BCR sing 96 n n C33 H332 BCR sing 97 n n C33 H333 BCR sing 98 n n C31 H311 BCR sing 99 n n C31 H312 BCR sing 100 n n C31 H313 BCR sing 101 n n C32 H321 BCR sing 102 n n C32 H322 BCR sing 103 n n C32 H323 BCR sing 104 n n C34 H341 BCR sing 105 n n C34 H342 BCR sing 106 n n C34 H343 BCR sing 107 n n C12 C13 BCR sing 108 n n C12 H12C BCR sing 109 n n C13 C14 BCR doub 110 e n C13 C35 BCR sing 111 n n C14 C15 BCR sing 112 n n C14 H14C BCR sing 113 n n C15 C16 BCR doub 114 e n C15 H15C BCR sing 115 n n C16 C17 BCR sing 116 n n C16 H16C BCR sing 117 n n C17 C18 BCR doub 118 e n C17 H17C BCR sing 119 n n C18 C19 BCR sing 120 n n C18 C36 BCR sing 121 n n C19 C20 BCR doub 122 e n C19 H19C BCR sing 123 n n C20 C21 BCR sing 124 n n C20 H20C BCR sing 125 n n C21 C22 BCR doub 126 e n C21 H21C BCR sing 127 n n C22 C23 BCR sing 128 n n C22 C37 BCR sing 129 n n C23 C24 BCR doub 130 e n C23 H23C BCR sing 131 n n C24 C25 BCR sing 132 n n C24 H24C BCR sing 133 n n C25 C26 BCR doub 134 n n C25 C30 BCR sing 135 n n C26 C27 BCR sing 136 n n C26 C38 BCR sing 137 n n C27 C28 BCR sing 138 n n C27 H271 BCR sing 139 n n C27 H272 BCR sing 140 n n C28 C29 BCR sing 141 n n C28 H281 BCR sing 142 n n C28 H282 BCR sing 143 n n C29 C30 BCR sing 144 n n C29 H291 BCR sing 145 n n C29 H292 BCR sing 146 n n C30 C39 BCR sing 147 n n C30 C40 BCR sing 148 n n C35 H351 BCR sing 149 n n C35 H352 BCR sing 150 n n C35 H353 BCR sing 151 n n C36 H361 BCR sing 152 n n C36 H362 BCR sing 153 n n C36 H363 BCR sing 154 n n C37 H371 BCR sing 155 n n C37 H372 BCR sing 156 n n C37 H373 BCR sing 157 n n C38 H381 BCR sing 158 n n C38 H382 BCR sing 159 n n C38 H383 BCR sing 160 n n C39 H391 BCR sing 161 n n C39 H392 BCR sing 162 n n C39 H393 BCR sing 163 n n C40 H401 BCR sing 164 n n C40 H402 BCR sing 165 n n C40 H403 BCR sing 166 n n # _atom_sites.entry_id 2D2C _atom_sites.fract_transf_matrix[1][1] 0.006386 _atom_sites.fract_transf_matrix[1][2] 0.003687 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007374 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 9 HEM A 1 301 301 HEM HEM . R 9 HEM A 1 302 302 HEM HEM . S 10 HEC A 1 303 303 HEC HEC . T 11 OPC B 1 305 305 OPC OPC . U 12 BNT B 1 309 309 BNT DBM . V 13 CLA B 1 201 201 CLA CLA . W 11 OPC C 1 306 306 OPC OPC . X 9 HEM C 1 301 301 HEM HEM . Y 14 FES D 1 201 201 FES FES . Z 15 BCR E 1 101 101 BCR BCR . AA 9 HEM N 1 301 301 HEM HEM . BA 9 HEM N 1 302 302 HEM HEM . CA 10 HEC N 1 303 303 HEC HEC . DA 11 OPC N 1 1305 305 OPC OPC . EA 11 OPC O 1 1306 306 OPC OPC . FA 12 BNT O 1 1309 309 BNT DBM . GA 13 CLA O 1 1201 201 CLA CLA . HA 9 HEM P 1 301 301 HEM HEM . IA 14 FES Q 1 201 201 FES FES . JA 15 BCR R 1 1101 101 BCR BCR . KA 16 HOH A 1 304 2 HOH HOH . LA 16 HOH N 1 1306 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BCR . . . JA 15 86.835 10.013 122.155 1 181.49 ? C1 BCR 1101 R 1 HETATM 2 C C2 BCR . . . JA 15 88.246 10.144 121.342 1 181.49 ? C2 BCR 1101 R 1 HETATM 3 C C3 BCR . . . JA 15 89.326 9.166 121.713 1 181.49 ? C3 BCR 1101 R 1 HETATM 4 C C4 BCR . . . JA 15 88.756 7.726 121.787 1 181.49 ? C4 BCR 1101 R 1 HETATM 5 C C5 BCR . . . JA 15 87.447 7.529 122.564 1 181.49 ? C5 BCR 1101 R 1 HETATM 6 C C6 BCR . . . JA 15 86.507 8.555 122.772 1 181.49 ? C6 BCR 1101 R 1 HETATM 7 C C7 BCR . . . JA 15 85.229 8.241 123.563 1 181.49 ? C7 BCR 1101 R 1 HETATM 8 C C8 BCR . . . JA 15 84.749 8.58 124.826 1 181.49 ? C8 BCR 1101 R 1 HETATM 9 C C9 BCR . . . JA 15 83.467 8.229 125.546 1 181.49 ? C9 BCR 1101 R 1 HETATM 10 C C10 BCR . . . JA 15 83.239 8.713 126.847 1 181.49 ? C10 BCR 1101 R 1 HETATM 11 C C11 BCR . . . JA 15 83.039 10.046 127.379 1 181.49 ? C11 BCR 1101 R 1 HETATM 12 C C33 BCR . . . JA 15 87.418 6.055 123.02 1 181.49 ? C33 BCR 1101 R 1 HETATM 13 C C31 BCR . . . JA 15 85.746 10.445 121.148 1 181.49 ? C31 BCR 1101 R 1 HETATM 14 C C32 BCR . . . JA 15 86.959 11.126 123.207 1 181.49 ? C32 BCR 1101 R 1 HETATM 15 C C34 BCR . . . JA 15 82.437 7.357 124.883 1 181.49 ? C34 BCR 1101 R 1 HETATM 16 C C12 BCR . . . JA 15 82.805 10.381 128.697 1 181.49 ? C12 BCR 1101 R 1 HETATM 17 C C13 BCR . . . JA 15 82.602 11.692 129.296 1 181.49 ? C13 BCR 1101 R 1 HETATM 18 C C14 BCR . . . JA 15 82.384 11.764 130.666 1 181.49 ? C14 BCR 1101 R 1 HETATM 19 C C15 BCR . . . JA 15 82.62 12.858 131.596 1 181.49 ? C15 BCR 1101 R 1 HETATM 20 C C16 BCR . . . JA 15 82.381 12.783 132.936 1 181.49 ? C16 BCR 1101 R 1 HETATM 21 C C17 BCR . . . JA 15 82.615 13.802 133.954 1 181.49 ? C17 BCR 1101 R 1 HETATM 22 C C18 BCR . . . JA 15 82.389 13.652 135.315 1 181.49 ? C18 BCR 1101 R 1 HETATM 23 C C19 BCR . . . JA 15 82.704 14.723 136.252 1 181.49 ? C19 BCR 1101 R 1 HETATM 24 C C20 BCR . . . JA 15 82.552 14.6 137.618 1 181.49 ? C20 BCR 1101 R 1 HETATM 25 C C21 BCR . . . JA 15 82.797 15.449 138.734 1 181.49 ? C21 BCR 1101 R 1 HETATM 26 C C22 BCR . . . JA 15 82.61 15.078 140.06 1 181.49 ? C22 BCR 1101 R 1 HETATM 27 C C23 BCR . . . JA 15 82.924 16.029 141.08 1 181.49 ? C23 BCR 1101 R 1 HETATM 28 C C24 BCR . . . JA 15 82.871 15.948 142.479 1 181.49 ? C24 BCR 1101 R 1 HETATM 29 C C25 BCR . . . JA 15 83.436 15.035 143.525 1 181.49 ? C25 BCR 1101 R 1 HETATM 30 C C26 BCR . . . JA 15 84.78 14.523 143.443 1 181.49 ? C26 BCR 1101 R 1 HETATM 31 C C27 BCR . . . JA 15 85.364 13.589 144.499 1 181.49 ? C27 BCR 1101 R 1 HETATM 32 C C28 BCR . . . JA 15 84.786 13.707 145.933 1 181.49 ? C28 BCR 1101 R 1 HETATM 33 C C29 BCR . . . JA 15 83.307 13.569 145.876 1 181.49 ? C29 BCR 1101 R 1 HETATM 34 C C30 BCR . . . JA 15 82.558 14.561 144.825 1 181.49 ? C30 BCR 1101 R 1 HETATM 35 C C35 BCR . . . JA 15 82.641 12.917 128.463 1 181.49 ? C35 BCR 1101 R 1 HETATM 36 C C36 BCR . . . JA 15 81.844 12.333 135.838 1 181.49 ? C36 BCR 1101 R 1 HETATM 37 C C37 BCR . . . JA 15 82.114 13.688 140.434 1 181.49 ? C37 BCR 1101 R 1 HETATM 38 C C38 BCR . . . JA 15 85.918 14.722 142.396 1 181.49 ? C38 BCR 1101 R 1 HETATM 39 C C39 BCR . . . JA 15 82.09 15.751 145.685 1 181.49 ? C39 BCR 1101 R 1 HETATM 40 C C40 BCR . . . JA 15 81.325 13.701 144.448 1 181.49 ? C40 BCR 1101 R 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 68 _model_server_stats.query_time_ms 381 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 40 #