data_2D2C
#
_model_server_result.job_id            AD5dShkPXKJh3aRk5Ekiog 
_model_server_result.datetime_utc      '2024-11-21 20:08:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2d2c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"FA","auth_seq_id":1309}' 
#
_entry.id    2D2C 
#
_exptl.entry_id    2D2C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              321.993 
_entity.id                          12 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,5-DIBROMO-3-ISOPROPYL-6-METHYLBENZO-1,4-QUINONE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2D2C 
_cell.length_a            156.587 
_cell.length_b            156.587 
_cell.length_c            361.786 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2D2C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 12 U N N 
? 12 FA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? 
disulf ? disulf2 L SG CYS 113 Q CYS 113 1_555 L SG CYS 128 Q CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
covale ? covale1 A SG CYS 35 A CYS 35 1_555 S CAB HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? 
covale ? covale2 C SG CYS 22 C CYS 22 1_555 X CAB HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? 
covale ? covale3 C SG CYS 25 C CYS 25 1_555 X CAC HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? 
covale ? covale4 I SG CYS 35 N CYS 35 1_555 CA CAB HEC . N HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? 
covale ? covale5 K SG CYS 22 P CYS 22 1_555 HA CAB HEM . P HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? 
covale ? covale6 K SG CYS 25 P CYS 25 1_555 HA CAC HEM . P HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? 
metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 Q FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 Q FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc5 S FE HEC . A HEC 303 1_555 KA O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? 
metalc ? metalc6 C N TYR 1 C TYR 1 1_555 X FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc7 D SG CYS 108 D CYS 108 1_555 Y FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc8 D ND1 HIS 110 D HIS 110 1_555 Y FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc9 D SG CYS 126 D CYS 126 1_555 Y FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc10 D ND1 HIS 129 D HIS 129 1_555 Y FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc11 I NE2 HIS 86 N HIS 86 1_555 AA FE HEM . N HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc12 I NE2 HIS 100 N HIS 100 1_555 BA FE HEM . N HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc13 I NE2 HIS 187 N HIS 187 1_555 AA FE HEM . N HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc14 I NE2 HIS 202 N HIS 202 1_555 BA FE HEM . N HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc15 CA FE HEC . N HEC 303 1_555 LA O HOH . N HOH 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc16 K N TYR 1 P TYR 1 1_555 HA FE HEM . P HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc17 L SG CYS 108 Q CYS 108 1_555 IA FE1 FES . Q FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc18 L ND1 HIS 110 Q HIS 110 1_555 IA FE2 FES . Q FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc19 L SG CYS 126 Q CYS 126 1_555 IA FE1 FES . Q FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc20 L ND1 HIS 129 Q HIS 129 1_555 IA FE2 FES . Q FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
#
_chem_comp.formula           'C10 H10 Br2 O2' 
_chem_comp.formula_weight    321.993 
_chem_comp.id                BNT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,5-DIBROMO-3-ISOPROPYL-6-METHYLBENZO-1,4-QUINONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     2,5-DIBROMO-3-METHYL-6-ISOPROPYLBENZOQUINONE;DBMIB 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CAD BNT sing 167 n n 
CAA HAA1 BNT sing 168 n n 
CAA HAA2 BNT sing 169 n n 
CAA HAA3 BNT sing 170 n n 
CAD CAC BNT sing 171 n n 
CAD CAE BNT sing 172 n n 
CAD HAD BNT sing 173 n n 
CAC HAC1 BNT sing 174 n n 
CAC HAC2 BNT sing 175 n n 
CAC HAC3 BNT sing 176 n n 
CAE CAF BNT sing 177 n n 
CAE CAJ BNT doub 178 n n 
CAF OAB BNT doub 179 n n 
CAF CAG BNT sing 180 n n 
CAG BRAH BNT sing 181 n n 
CAG CAL BNT doub 182 n n 
CAL CAM BNT sing 183 n n 
CAL CAK BNT sing 184 n n 
CAM HAM1 BNT sing 185 n n 
CAM HAM2 BNT sing 186 n n 
CAM HAM3 BNT sing 187 n n 
CAK OAN BNT doub 188 n n 
CAK CAJ BNT sing 189 n n 
CAJ BRAI BNT sing 190 n n 
#
_atom_sites.entry_id                     2D2C 
_atom_sites.fract_transf_matrix[1][1]    0.006386 
_atom_sites.fract_transf_matrix[1][2]    0.003687 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007374 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002764 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 9 HEM A 1 301 301 HEM HEM . 
R 9 HEM A 1 302 302 HEM HEM . 
S 10 HEC A 1 303 303 HEC HEC . 
T 11 OPC B 1 305 305 OPC OPC . 
U 12 BNT B 1 309 309 BNT DBM . 
V 13 CLA B 1 201 201 CLA CLA . 
W 11 OPC C 1 306 306 OPC OPC . 
X 9 HEM C 1 301 301 HEM HEM . 
Y 14 FES D 1 201 201 FES FES . 
Z 15 BCR E 1 101 101 BCR BCR . 
AA 9 HEM N 1 301 301 HEM HEM . 
BA 9 HEM N 1 302 302 HEM HEM . 
CA 10 HEC N 1 303 303 HEC HEC . 
DA 11 OPC N 1 1305 305 OPC OPC . 
EA 11 OPC O 1 1306 306 OPC OPC . 
FA 12 BNT O 1 1309 309 BNT DBM . 
GA 13 CLA O 1 1201 201 CLA CLA . 
HA 9 HEM P 1 301 301 HEM HEM . 
IA 14 FES Q 1 201 201 FES FES . 
JA 15 BCR R 1 1101 101 BCR BCR . 
KA 16 HOH A 1 304 2 HOH HOH . 
LA 16 HOH N 1 1306 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA BNT . . . FA 12 78.295 -18.035 118.513 1 64.14 ? CAA BNT 1309 O 1 
HETATM 2 C CAD BNT . . . FA 12 78.26 -18.945 119.744 1 64.14 ? CAD BNT 1309 O 1 
HETATM 3 C CAC BNT . . . FA 12 77.702 -18.189 120.954 1 64.14 ? CAC BNT 1309 O 1 
HETATM 4 C CAE BNT . . . FA 12 79.477 -19.612 119.862 1 64.14 ? CAE BNT 1309 O 1 
HETATM 5 C CAF BNT . . . FA 12 80.594 -18.941 120.369 1 64.14 ? CAF BNT 1309 O 1 
HETATM 6 O OAB BNT . . . FA 12 80.466 -17.762 120.699 1 64.14 ? OAB BNT 1309 O 1 
HETATM 7 C CAG BNT . . . FA 12 81.832 -19.563 120.527 1 64.14 ? CAG BNT 1309 O 1 
HETATM 8 BR BRAH BNT . . . FA 12 83.227 -18.566 121.288 1 64.14 ? BRAH BNT 1309 O 1 
HETATM 9 C CAL BNT . . . FA 12 82.018 -20.902 120.174 1 64.14 ? CAL BNT 1309 O 1 
HETATM 10 C CAM BNT . . . FA 12 83.259 -21.518 120.292 1 64.14 ? CAM BNT 1309 O 1 
HETATM 11 C CAK BNT . . . FA 12 80.952 -21.642 119.665 1 64.14 ? CAK BNT 1309 O 1 
HETATM 12 O OAN BNT . . . FA 12 81.115 -22.826 119.371 1 64.14 ? OAN BNT 1309 O 1 
HETATM 13 C CAJ BNT . . . FA 12 79.59 -20.954 119.499 1 64.14 ? CAJ BNT 1309 O 1 
HETATM 14 BR BRAI BNT . . . FA 12 78.109 -21.912 118.855 1 64.14 ? BRAI BNT 1309 O 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    156 
_model_server_stats.query_time_ms           511 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#