data_2D2C # _model_server_result.job_id H5j3WcOABimCELTb-MC5bA _model_server_result.datetime_utc '2024-11-05 23:54:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2d2c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":201}' # _entry.id 2D2C # _exptl.entry_id 2D2C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.82 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2D2C _cell.length_a 156.587 _cell.length_b 156.587 _cell.length_c 361.786 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D2C _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 Y N N ? 14 IA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? disulf ? disulf2 L SG CYS 113 Q CYS 113 1_555 L SG CYS 128 Q CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? covale ? covale1 A SG CYS 35 A CYS 35 1_555 S CAB HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? covale ? covale2 C SG CYS 22 C CYS 22 1_555 X CAB HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? covale ? covale3 C SG CYS 25 C CYS 25 1_555 X CAC HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? covale ? covale4 I SG CYS 35 N CYS 35 1_555 CA CAB HEC . N HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? covale ? covale5 K SG CYS 22 P CYS 22 1_555 HA CAB HEM . P HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? covale ? covale6 K SG CYS 25 P CYS 25 1_555 HA CAC HEM . P HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 Q FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 Q FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc5 S FE HEC . A HEC 303 1_555 KA O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc6 C N TYR 1 C TYR 1 1_555 X FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc7 D SG CYS 108 D CYS 108 1_555 Y FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc8 D ND1 HIS 110 D HIS 110 1_555 Y FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc9 D SG CYS 126 D CYS 126 1_555 Y FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc10 D ND1 HIS 129 D HIS 129 1_555 Y FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc11 I NE2 HIS 86 N HIS 86 1_555 AA FE HEM . N HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc12 I NE2 HIS 100 N HIS 100 1_555 BA FE HEM . N HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc13 I NE2 HIS 187 N HIS 187 1_555 AA FE HEM . N HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc14 I NE2 HIS 202 N HIS 202 1_555 BA FE HEM . N HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc15 CA FE HEC . N HEC 303 1_555 LA O HOH . N HOH 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc16 K N TYR 1 P TYR 1 1_555 HA FE HEM . P HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc17 L SG CYS 108 Q CYS 108 1_555 IA FE1 FES . Q FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc18 L ND1 HIS 110 Q HIS 110 1_555 IA FE2 FES . Q FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc19 L SG CYS 126 Q CYS 126 1_555 IA FE1 FES . Q FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc20 L ND1 HIS 129 Q HIS 129 1_555 IA FE2 FES . Q FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 349 n n FE1 S2 FES sing 350 n n FE2 S1 FES sing 351 n n FE2 S2 FES sing 352 n n # _atom_sites.entry_id 2D2C _atom_sites.fract_transf_matrix[1][1] 0.006386 _atom_sites.fract_transf_matrix[1][2] 0.003687 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007374 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 9 HEM A 1 301 301 HEM HEM . R 9 HEM A 1 302 302 HEM HEM . S 10 HEC A 1 303 303 HEC HEC . T 11 OPC B 1 305 305 OPC OPC . U 12 BNT B 1 309 309 BNT DBM . V 13 CLA B 1 201 201 CLA CLA . W 11 OPC C 1 306 306 OPC OPC . X 9 HEM C 1 301 301 HEM HEM . Y 14 FES D 1 201 201 FES FES . Z 15 BCR E 1 101 101 BCR BCR . AA 9 HEM N 1 301 301 HEM HEM . BA 9 HEM N 1 302 302 HEM HEM . CA 10 HEC N 1 303 303 HEC HEC . DA 11 OPC N 1 1305 305 OPC OPC . EA 11 OPC O 1 1306 306 OPC OPC . FA 12 BNT O 1 1309 309 BNT DBM . GA 13 CLA O 1 1201 201 CLA CLA . HA 9 HEM P 1 301 301 HEM HEM . IA 14 FES Q 1 201 201 FES FES . JA 15 BCR R 1 1101 101 BCR BCR . KA 16 HOH A 1 304 2 HOH HOH . LA 16 HOH N 1 1306 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . Y 14 58.207 -23.297 121.353 1 70.25 ? FE1 FES 201 D 1 HETATM 2 FE FE2 FES . . . Y 14 58.625 -20.881 122.499 1 70.25 ? FE2 FES 201 D 1 HETATM 3 S S1 FES . . . Y 14 57.809 -22.687 123.41 1 97.27 ? S1 FES 201 D 1 HETATM 4 S S2 FES . . . Y 14 59.036 -21.489 120.386 1 97.27 ? S2 FES 201 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #