data_2D2C # _model_server_result.job_id bhxY6t543cBJYjR81kBMtQ _model_server_result.datetime_utc '2024-11-24 10:22:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2d2c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":303}' # _entry.id 2D2C # _exptl.entry_id 2D2C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2D2C _cell.length_a 156.587 _cell.length_b 156.587 _cell.length_c 361.786 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D2C _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 S N N ? 10 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? disulf ? disulf2 L SG CYS 113 Q CYS 113 1_555 L SG CYS 128 Q CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? covale ? covale1 A SG CYS 35 A CYS 35 1_555 S CAB HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? covale ? covale2 C SG CYS 22 C CYS 22 1_555 X CAB HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? covale ? covale3 C SG CYS 25 C CYS 25 1_555 X CAC HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? covale ? covale4 I SG CYS 35 N CYS 35 1_555 CA CAB HEC . N HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? covale ? covale5 K SG CYS 22 P CYS 22 1_555 HA CAB HEM . P HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? covale ? covale6 K SG CYS 25 P CYS 25 1_555 HA CAC HEM . P HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 Q FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 Q FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc5 S FE HEC . A HEC 303 1_555 KA O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc6 C N TYR 1 C TYR 1 1_555 X FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc7 D SG CYS 108 D CYS 108 1_555 Y FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc8 D ND1 HIS 110 D HIS 110 1_555 Y FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc9 D SG CYS 126 D CYS 126 1_555 Y FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc10 D ND1 HIS 129 D HIS 129 1_555 Y FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc11 I NE2 HIS 86 N HIS 86 1_555 AA FE HEM . N HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc12 I NE2 HIS 100 N HIS 100 1_555 BA FE HEM . N HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc13 I NE2 HIS 187 N HIS 187 1_555 AA FE HEM . N HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc14 I NE2 HIS 202 N HIS 202 1_555 BA FE HEM . N HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc15 CA FE HEC . N HEC 303 1_555 LA O HOH . N HOH 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc16 K N TYR 1 P TYR 1 1_555 HA FE HEM . P HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc17 L SG CYS 108 Q CYS 108 1_555 IA FE1 FES . Q FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc18 L ND1 HIS 110 Q HIS 110 1_555 IA FE2 FES . Q FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc19 L SG CYS 126 Q CYS 126 1_555 IA FE1 FES . Q FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc20 L ND1 HIS 129 Q HIS 129 1_555 IA FE2 FES . Q FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 399 n n FE NB HEC sing 400 n n FE NC HEC sing 401 n n FE ND HEC sing 402 n n CHA C1A HEC doub 403 n n CHA C4D HEC sing 404 n n CHA HHA HEC sing 405 n n CHB C4A HEC doub 406 n n CHB C1B HEC sing 407 n n CHB HHB HEC sing 408 n n CHC C4B HEC doub 409 n n CHC C1C HEC sing 410 n n CHC HHC HEC sing 411 n n CHD C4C HEC doub 412 n n CHD C1D HEC sing 413 n n CHD HHD HEC sing 414 n n NA C1A HEC sing 415 n y NA C4A HEC sing 416 n y C1A C2A HEC sing 417 n y C2A C3A HEC doub 418 n y C2A CAA HEC sing 419 n n C3A C4A HEC sing 420 n y C3A CMA HEC sing 421 n n CMA HMA1 HEC sing 422 n n CMA HMA2 HEC sing 423 n n CMA HMA3 HEC sing 424 n n CAA CBA HEC sing 425 n n CAA HAA1 HEC sing 426 n n CAA HAA2 HEC sing 427 n n CBA CGA HEC sing 428 n n CBA HBA1 HEC sing 429 n n CBA HBA2 HEC sing 430 n n CGA O1A HEC doub 431 n n CGA O2A HEC sing 432 n n O2A H2A HEC sing 433 n n NB C1B HEC sing 434 n y NB C4B HEC sing 435 n y C1B C2B HEC doub 436 n y C2B C3B HEC sing 437 n y C2B CMB HEC sing 438 n n C3B C4B HEC sing 439 n y C3B CAB HEC doub 440 e n CMB HMB1 HEC sing 441 n n CMB HMB2 HEC sing 442 n n CMB HMB3 HEC sing 443 n n CAB CBB HEC sing 444 n n CAB HAB HEC sing 445 n n CBB HBB1 HEC sing 446 n n CBB HBB2 HEC sing 447 n n CBB HBB3 HEC sing 448 n n NC C1C HEC sing 449 n y NC C4C HEC sing 450 n y C1C C2C HEC doub 451 n y C2C C3C HEC sing 452 n y C2C CMC HEC sing 453 n n C3C C4C HEC sing 454 n y C3C CAC HEC doub 455 e n CMC HMC1 HEC sing 456 n n CMC HMC2 HEC sing 457 n n CMC HMC3 HEC sing 458 n n CAC CBC HEC sing 459 n n CAC HAC HEC sing 460 n n CBC HBC1 HEC sing 461 n n CBC HBC2 HEC sing 462 n n CBC HBC3 HEC sing 463 n n ND C1D HEC sing 464 n y ND C4D HEC sing 465 n y C1D C2D HEC doub 466 n y C2D C3D HEC sing 467 n y C2D CMD HEC sing 468 n n C3D C4D HEC doub 469 n y C3D CAD HEC sing 470 n n CMD HMD1 HEC sing 471 n n CMD HMD2 HEC sing 472 n n CMD HMD3 HEC sing 473 n n CAD CBD HEC sing 474 n n CAD HAD1 HEC sing 475 n n CAD HAD2 HEC sing 476 n n CBD CGD HEC sing 477 n n CBD HBD1 HEC sing 478 n n CBD HBD2 HEC sing 479 n n CGD O1D HEC doub 480 n n CGD O2D HEC sing 481 n n O2D H2D HEC sing 482 n n # _atom_sites.entry_id 2D2C _atom_sites.fract_transf_matrix[1][1] 0.006386 _atom_sites.fract_transf_matrix[1][2] 0.003687 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007374 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 9 HEM A 1 301 301 HEM HEM . R 9 HEM A 1 302 302 HEM HEM . S 10 HEC A 1 303 303 HEC HEC . T 11 OPC B 1 305 305 OPC OPC . U 12 BNT B 1 309 309 BNT DBM . V 13 CLA B 1 201 201 CLA CLA . W 11 OPC C 1 306 306 OPC OPC . X 9 HEM C 1 301 301 HEM HEM . Y 14 FES D 1 201 201 FES FES . Z 15 BCR E 1 101 101 BCR BCR . AA 9 HEM N 1 301 301 HEM HEM . BA 9 HEM N 1 302 302 HEM HEM . CA 10 HEC N 1 303 303 HEC HEC . DA 11 OPC N 1 1305 305 OPC OPC . EA 11 OPC O 1 1306 306 OPC OPC . FA 12 BNT O 1 1309 309 BNT DBM . GA 13 CLA O 1 1201 201 CLA CLA . HA 9 HEM P 1 301 301 HEM HEM . IA 14 FES Q 1 201 201 FES FES . JA 15 BCR R 1 1101 101 BCR BCR . KA 16 HOH A 1 304 2 HOH HOH . LA 16 HOH N 1 1306 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . S 10 73.312 16.023 80.734 1 57.66 ? FE HEC 303 A 1 HETATM 2 C CHA HEC . . . S 10 74.973 18.016 83.044 1 104.59 ? CHA HEC 303 A 1 HETATM 3 C CHB HEC . . . S 10 74.198 18.101 78.225 1 104.59 ? CHB HEC 303 A 1 HETATM 4 C CHC HEC . . . S 10 71.574 14.056 78.503 1 104.59 ? CHC HEC 303 A 1 HETATM 5 C CHD HEC . . . S 10 72.134 14.146 83.328 1 104.59 ? CHD HEC 303 A 1 HETATM 6 N NA HEC . . . S 10 74.41 17.692 80.655 1 104.59 ? NA HEC 303 A 1 HETATM 7 C C1A HEC . . . S 10 75.039 18.399 81.679 1 104.59 ? C1A HEC 303 A 1 HETATM 8 C C2A HEC . . . S 10 75.738 19.585 81.215 1 104.59 ? C2A HEC 303 A 1 HETATM 9 C C3A HEC . . . S 10 75.565 19.617 79.861 1 104.59 ? C3A HEC 303 A 1 HETATM 10 C C4A HEC . . . S 10 74.697 18.442 79.512 1 104.59 ? C4A HEC 303 A 1 HETATM 11 C CMA HEC . . . S 10 76.081 20.628 78.847 1 104.59 ? CMA HEC 303 A 1 HETATM 12 C CAA HEC . . . S 10 76.487 20.597 82.15 1 104.59 ? CAA HEC 303 A 1 HETATM 13 C CBA HEC . . . S 10 76.142 22.074 81.876 1 104.59 ? CBA HEC 303 A 1 HETATM 14 C CGA HEC . . . S 10 76.602 23.203 82.781 1 104.59 ? CGA HEC 303 A 1 HETATM 15 O O1A HEC . . . S 10 77.228 23.017 83.87 1 104.59 ? O1A HEC 303 A 1 HETATM 16 O O2A HEC . . . S 10 76.265 24.365 82.341 1 104.59 ? O2A HEC 303 A 1 HETATM 17 N NB HEC . . . S 10 72.977 16.071 78.767 1 104.59 ? NB HEC 303 A 1 HETATM 18 C C1B HEC . . . S 10 73.418 17.049 77.839 1 104.59 ? C1B HEC 303 A 1 HETATM 19 C C2B HEC . . . S 10 72.952 16.772 76.524 1 104.59 ? C2B HEC 303 A 1 HETATM 20 C C3B HEC . . . S 10 72.231 15.647 76.583 1 104.59 ? C3B HEC 303 A 1 HETATM 21 C C4B HEC . . . S 10 72.24 15.188 77.996 1 104.59 ? C4B HEC 303 A 1 HETATM 22 C CMB HEC . . . S 10 73.245 17.652 75.312 1 104.59 ? CMB HEC 303 A 1 HETATM 23 C CAB HEC . . . S 10 71.483 14.924 75.439 1 104.59 ? CAB HEC 303 A 1 HETATM 24 C CBB HEC . . . S 10 70.065 15.545 75.151 1 104.59 ? CBB HEC 303 A 1 HETATM 25 N NC HEC . . . S 10 72.108 14.371 80.858 1 104.59 ? NC HEC 303 A 1 HETATM 26 C C1C HEC . . . S 10 71.489 13.696 79.856 1 104.59 ? C1C HEC 303 A 1 HETATM 27 C C2C HEC . . . S 10 70.664 12.635 80.373 1 104.59 ? C2C HEC 303 A 1 HETATM 28 C C3C HEC . . . S 10 70.786 12.664 81.733 1 104.59 ? C3C HEC 303 A 1 HETATM 29 C C4C HEC . . . S 10 71.717 13.74 82.037 1 104.59 ? C4C HEC 303 A 1 HETATM 30 C CMC HEC . . . S 10 69.806 11.74 79.514 1 104.59 ? CMC HEC 303 A 1 HETATM 31 C CAC HEC . . . S 10 70.096 11.818 82.822 1 104.59 ? CAC HEC 303 A 1 HETATM 32 C CBC HEC . . . S 10 69.068 12.536 83.757 1 104.59 ? CBC HEC 303 A 1 HETATM 33 N ND HEC . . . S 10 73.542 16.06 82.775 1 104.59 ? ND HEC 303 A 1 HETATM 34 C C1D HEC . . . S 10 72.951 15.167 83.687 1 104.59 ? C1D HEC 303 A 1 HETATM 35 C C2D HEC . . . S 10 73.363 15.558 85.069 1 104.59 ? C2D HEC 303 A 1 HETATM 36 C C3D HEC . . . S 10 74.176 16.625 84.989 1 104.59 ? C3D HEC 303 A 1 HETATM 37 C C4D HEC . . . S 10 74.262 16.942 83.535 1 104.59 ? C4D HEC 303 A 1 HETATM 38 C CMD HEC . . . S 10 72.843 14.747 86.323 1 104.59 ? CMD HEC 303 A 1 HETATM 39 C CAD HEC . . . S 10 74.874 17.387 86.049 1 104.59 ? CAD HEC 303 A 1 HETATM 40 C CBD HEC . . . S 10 73.949 17.997 87.136 1 104.59 ? CBD HEC 303 A 1 HETATM 41 C CGD HEC . . . S 10 74.653 18.869 88.156 1 104.59 ? CGD HEC 303 A 1 HETATM 42 O O1D HEC . . . S 10 75.884 19.129 88.094 1 104.59 ? O1D HEC 303 A 1 HETATM 43 O O2D HEC . . . S 10 73.901 19.333 89.071 1 104.59 ? O2D HEC 303 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #