data_2D2D # _model_server_result.job_id S-fGWSgUAOIQUlNGDVJ-3A _model_server_result.datetime_utc '2024-11-21 10:20:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2d2d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":307}' # _entry.id 2D2D # _exptl.entry_id 2D2D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 558.666 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ETHYL (2E,4S)-4-[((2R)-2-{[N-(TERT-BUTOXYCARBONYL)-L-VALYL]AMINO}-2-PHENYLETHANOYL)AMINO]-5-[(3S)-2-OXOPYRROLIDIN-3-YL]PENT-2-ENOATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.04 _cell.angle_gamma 90 _cell.entry_id 2D2D _cell.length_a 50.703 _cell.length_b 94.737 _cell.length_c 66.204 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D2D _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 150 A CYS 145 1_555 C C2 ENB . A ENB 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? covale ? covale2 B SG CYS 150 B CYS 145 1_555 D C2 ENB . B ENB 1145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? # _chem_comp.formula 'C29 H42 N4 O7' _chem_comp.formula_weight 558.666 _chem_comp.id ENB _chem_comp.mon_nstd_flag . _chem_comp.name 'ETHYL (2E,4S)-4-[((2R)-2-{[N-(TERT-BUTOXYCARBONYL)-L-VALYL]AMINO}-2-PHENYLETHANOYL)AMINO]-5-[(3S)-2-OXOPYRROLIDIN-3-YL]PENT-2-ENOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(E)-(S)-4-[(S)-2-((S)-2-TERT-BUTOXYCARBONYLAMINO-3-METHYL-BUTYRYLAMINO)-2-PHENYL-ACETYLAMINO]-5-(2-OXO-PYRROLIDIN-3-YL)-PENT-2-ENOIC ACID ETHYL ESTER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ENB sing 83 n n C1 N1 ENB sing 84 n n C1 C15 ENB sing 85 n n C1 H1 ENB sing 86 n n C2 C26 ENB doub 87 e n C2 H2 ENB sing 88 n n N1 C3 ENB sing 89 n n N1 HN1 ENB sing 90 n n C3 C4 ENB sing 91 n n C3 O1 ENB doub 92 n n C4 N2 ENB sing 93 n n C4 C5 ENB sing 94 n n C4 H4 ENB sing 95 n n N2 C11 ENB sing 96 n n N2 HN2 ENB sing 97 n n C5 C6 ENB sing 98 n y C5 C10 ENB doub 99 n y C6 C7 ENB doub 100 n y C6 H6 ENB sing 101 n n C7 C8 ENB sing 102 n y C7 H7 ENB sing 103 n n C8 C9 ENB doub 104 n y C8 H8 ENB sing 105 n n C9 C10 ENB sing 106 n y C9 H9 ENB sing 107 n n C10 H10 ENB sing 108 n n C11 C12 ENB sing 109 n n C11 O2 ENB doub 110 n n C12 N3 ENB sing 111 n n C12 C20 ENB sing 112 n n C12 H12 ENB sing 113 n n N3 C13 ENB sing 114 n n N3 HN3 ENB sing 115 n n C13 O3 ENB sing 116 n n C13 O4 ENB doub 117 n n O3 C14 ENB sing 118 n n C14 C23 ENB sing 119 n n C14 C24 ENB sing 120 n n C14 C25 ENB sing 121 n n C15 C16 ENB sing 122 n n C15 H151 ENB sing 123 n n C15 H152 ENB sing 124 n n C16 C17 ENB sing 125 n n C16 C19 ENB sing 126 n n C16 H16 ENB sing 127 n n C17 C18 ENB sing 128 n n C17 H171 ENB sing 129 n n C17 H172 ENB sing 130 n n C18 N4 ENB sing 131 n n C18 H181 ENB sing 132 n n C18 H182 ENB sing 133 n n N4 C19 ENB sing 134 n n N4 HN4 ENB sing 135 n n C19 O5 ENB doub 136 n n C20 C21 ENB sing 137 n n C20 C22 ENB sing 138 n n C20 H20 ENB sing 139 n n C21 H211 ENB sing 140 n n C21 H212 ENB sing 141 n n C21 H213 ENB sing 142 n n C22 H221 ENB sing 143 n n C22 H222 ENB sing 144 n n C22 H223 ENB sing 145 n n C23 H231 ENB sing 146 n n C23 H232 ENB sing 147 n n C23 H233 ENB sing 148 n n C24 H241 ENB sing 149 n n C24 H242 ENB sing 150 n n C24 H243 ENB sing 151 n n C25 H251 ENB sing 152 n n C25 H252 ENB sing 153 n n C25 H253 ENB sing 154 n n C26 C27 ENB sing 155 n n C26 H26 ENB sing 156 n n C27 O6 ENB sing 157 n n C27 O7 ENB doub 158 n n O6 C28 ENB sing 159 n n C28 C29 ENB sing 160 n n C28 H281 ENB sing 161 n n C28 H282 ENB sing 162 n n C29 H291 ENB sing 163 n n C29 H292 ENB sing 164 n n C29 H293 ENB sing 165 n n # _atom_sites.entry_id 2D2D _atom_sites.fract_transf_matrix[1][1] 0.019723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004567 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ENB A 1 307 145 ENB INB . D 2 ENB B 1 1145 145 ENB INB . E 3 HOH A 1 308 3 HOH HOH . E 3 HOH A 2 309 7 HOH HOH . E 3 HOH A 3 310 8 HOH HOH . E 3 HOH A 4 311 9 HOH HOH . E 3 HOH A 5 312 13 HOH HOH . E 3 HOH A 6 313 15 HOH HOH . E 3 HOH A 7 314 19 HOH HOH . E 3 HOH A 8 315 20 HOH HOH . E 3 HOH A 9 316 23 HOH HOH . E 3 HOH A 10 317 24 HOH HOH . E 3 HOH A 11 318 25 HOH HOH . E 3 HOH A 12 319 28 HOH HOH . E 3 HOH A 13 320 29 HOH HOH . E 3 HOH A 14 321 30 HOH HOH . E 3 HOH A 15 322 33 HOH HOH . E 3 HOH A 16 323 34 HOH HOH . E 3 HOH A 17 324 39 HOH HOH . E 3 HOH A 18 325 40 HOH HOH . E 3 HOH A 19 326 46 HOH HOH . E 3 HOH A 20 327 48 HOH HOH . E 3 HOH A 21 328 50 HOH HOH . E 3 HOH A 22 329 52 HOH HOH . E 3 HOH A 23 330 53 HOH HOH . E 3 HOH A 24 331 54 HOH HOH . E 3 HOH A 25 332 55 HOH HOH . E 3 HOH A 26 333 56 HOH HOH . E 3 HOH A 27 334 57 HOH HOH . E 3 HOH A 28 335 58 HOH HOH . E 3 HOH A 29 336 59 HOH HOH . E 3 HOH A 30 337 60 HOH HOH . E 3 HOH A 31 338 62 HOH HOH . E 3 HOH A 32 339 66 HOH HOH . E 3 HOH A 33 340 67 HOH HOH . E 3 HOH A 34 341 68 HOH HOH . E 3 HOH A 35 342 70 HOH HOH . E 3 HOH A 36 343 72 HOH HOH . E 3 HOH A 37 344 75 HOH HOH . E 3 HOH A 38 345 76 HOH HOH . E 3 HOH A 39 346 77 HOH HOH . E 3 HOH A 40 347 78 HOH HOH . E 3 HOH A 41 348 79 HOH HOH . E 3 HOH A 42 349 81 HOH HOH . E 3 HOH A 43 350 82 HOH HOH . E 3 HOH A 44 351 83 HOH HOH . E 3 HOH A 45 352 84 HOH HOH . E 3 HOH A 46 353 85 HOH HOH . E 3 HOH A 47 354 87 HOH HOH . E 3 HOH A 48 355 88 HOH HOH . E 3 HOH A 49 356 94 HOH HOH . E 3 HOH A 50 357 95 HOH HOH . E 3 HOH A 51 358 97 HOH HOH . E 3 HOH A 52 359 99 HOH HOH . E 3 HOH A 53 360 100 HOH HOH . E 3 HOH A 54 361 102 HOH HOH . E 3 HOH A 55 362 103 HOH HOH . E 3 HOH A 56 363 105 HOH HOH . E 3 HOH A 57 364 107 HOH HOH . E 3 HOH A 58 365 111 HOH HOH . E 3 HOH A 59 366 112 HOH HOH . E 3 HOH A 60 367 115 HOH HOH . E 3 HOH A 61 368 116 HOH HOH . E 3 HOH A 62 369 117 HOH HOH . E 3 HOH A 63 370 118 HOH HOH . E 3 HOH A 64 371 121 HOH HOH . E 3 HOH A 65 372 122 HOH HOH . E 3 HOH A 66 373 127 HOH HOH . E 3 HOH A 67 374 128 HOH HOH . E 3 HOH A 68 375 130 HOH HOH . E 3 HOH A 69 376 131 HOH HOH . E 3 HOH A 70 377 132 HOH HOH . E 3 HOH A 71 378 133 HOH HOH . E 3 HOH A 72 379 134 HOH HOH . E 3 HOH A 73 380 135 HOH HOH . F 3 HOH B 1 1146 1 HOH HOH . F 3 HOH B 2 1147 2 HOH HOH . F 3 HOH B 3 1148 4 HOH HOH . F 3 HOH B 4 1149 5 HOH HOH . F 3 HOH B 5 1150 6 HOH HOH . F 3 HOH B 6 1151 10 HOH HOH . F 3 HOH B 7 1152 11 HOH HOH . F 3 HOH B 8 1153 12 HOH HOH . F 3 HOH B 9 1154 14 HOH HOH . F 3 HOH B 10 1155 16 HOH HOH . F 3 HOH B 11 1156 17 HOH HOH . F 3 HOH B 12 1157 18 HOH HOH . F 3 HOH B 13 1158 21 HOH HOH . F 3 HOH B 14 1159 22 HOH HOH . F 3 HOH B 15 1160 26 HOH HOH . F 3 HOH B 16 1161 27 HOH HOH . F 3 HOH B 17 1162 31 HOH HOH . F 3 HOH B 18 1163 32 HOH HOH . F 3 HOH B 19 1164 35 HOH HOH . F 3 HOH B 20 1165 36 HOH HOH . F 3 HOH B 21 1166 37 HOH HOH . F 3 HOH B 22 1167 38 HOH HOH . F 3 HOH B 23 1168 41 HOH HOH . F 3 HOH B 24 1169 42 HOH HOH . F 3 HOH B 25 1170 43 HOH HOH . F 3 HOH B 26 1171 44 HOH HOH . F 3 HOH B 27 1172 45 HOH HOH . F 3 HOH B 28 1173 47 HOH HOH . F 3 HOH B 29 1174 49 HOH HOH . F 3 HOH B 30 1175 51 HOH HOH . F 3 HOH B 31 1176 61 HOH HOH . F 3 HOH B 32 1177 63 HOH HOH . F 3 HOH B 33 1178 64 HOH HOH . F 3 HOH B 34 1179 65 HOH HOH . F 3 HOH B 35 1180 69 HOH HOH . F 3 HOH B 36 1181 71 HOH HOH . F 3 HOH B 37 1182 73 HOH HOH . F 3 HOH B 38 1183 74 HOH HOH . F 3 HOH B 39 1184 80 HOH HOH . F 3 HOH B 40 1185 86 HOH HOH . F 3 HOH B 41 1186 89 HOH HOH . F 3 HOH B 42 1187 90 HOH HOH . F 3 HOH B 43 1188 91 HOH HOH . F 3 HOH B 44 1189 92 HOH HOH . F 3 HOH B 45 1190 93 HOH HOH . F 3 HOH B 46 1191 96 HOH HOH . F 3 HOH B 47 1192 98 HOH HOH . F 3 HOH B 48 1193 101 HOH HOH . F 3 HOH B 49 1194 104 HOH HOH . F 3 HOH B 50 1195 106 HOH HOH . F 3 HOH B 51 1196 108 HOH HOH . F 3 HOH B 52 1197 109 HOH HOH . F 3 HOH B 53 1198 110 HOH HOH . F 3 HOH B 54 1199 113 HOH HOH . F 3 HOH B 55 1200 114 HOH HOH . F 3 HOH B 56 1201 119 HOH HOH . F 3 HOH B 57 1202 120 HOH HOH . F 3 HOH B 58 1203 123 HOH HOH . F 3 HOH B 59 1204 124 HOH HOH . F 3 HOH B 60 1205 125 HOH HOH . F 3 HOH B 61 1206 126 HOH HOH . F 3 HOH B 62 1207 129 HOH HOH . F 3 HOH B 63 1208 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ENB . . . C 2 92.515 -2.884 7.442 1 51 ? C1 ENB 307 A 1 HETATM 2 C C2 ENB . . . C 2 92.357 -1.809 8.552 1 50.45 ? C2 ENB 307 A 1 HETATM 3 N N1 ENB . . . C 2 93.442 -1.898 6.929 1 53.66 ? N1 ENB 307 A 1 HETATM 4 C C3 ENB . . . C 2 93.388 -2.098 5.39 1 57.76 ? C3 ENB 307 A 1 HETATM 5 C C4 ENB . . . C 2 94.475 -2.482 4.734 1 59.05 ? C4 ENB 307 A 1 HETATM 6 O O1 ENB . . . C 2 92.362 -2.142 4.62 1 59.34 ? O1 ENB 307 A 1 HETATM 7 N N2 ENB . . . C 2 94.234 -3.266 3.522 1 61.44 ? N2 ENB 307 A 1 HETATM 8 C C5 ENB . . . C 2 95.485 -1.38 4.529 1 59.02 ? C5 ENB 307 A 1 HETATM 9 C C6 ENB . . . C 2 95.611 -0.73 3.297 1 59.46 ? C6 ENB 307 A 1 HETATM 10 C C7 ENB . . . C 2 96.529 0.31 3.13 1 58.72 ? C7 ENB 307 A 1 HETATM 11 C C8 ENB . . . C 2 97.325 0.72 4.199 1 57.06 ? C8 ENB 307 A 1 HETATM 12 C C9 ENB . . . C 2 97.199 0.088 5.437 1 58.54 ? C9 ENB 307 A 1 HETATM 13 C C10 ENB . . . C 2 96.285 -0.955 5.597 1 59.29 ? C10 ENB 307 A 1 HETATM 14 C C11 ENB . . . C 2 95.044 -4.308 3.172 1 62.5 ? C11 ENB 307 A 1 HETATM 15 C C12 ENB . . . C 2 94.801 -4.878 1.781 1 62.09 ? C12 ENB 307 A 1 HETATM 16 O O2 ENB . . . C 2 95.881 -4.783 3.903 1 64.8 ? O2 ENB 307 A 1 HETATM 17 N N3 ENB . . . C 2 95.981 -5.69 1.465 1 63.67 ? N3 ENB 307 A 1 HETATM 18 C C13 ENB . . . C 2 96.528 -5.748 0.214 1 65.87 ? C13 ENB 307 A 1 HETATM 19 O O3 ENB . . . C 2 97.564 -6.611 0.058 1 65.95 ? O3 ENB 307 A 1 HETATM 20 O O4 ENB . . . C 2 96.035 -5.141 -0.709 1 68.12 ? O4 ENB 307 A 1 HETATM 21 C C14 ENB . . . C 2 97.87 -7.162 -1.216 1 66.36 ? C14 ENB 307 A 1 HETATM 22 C C15 ENB . . . C 2 91.774 -4.216 7.72 1 50.66 ? C15 ENB 307 A 1 HETATM 23 C C16 ENB . . . C 2 91.565 -5.116 6.581 1 51.6 ? C16 ENB 307 A 1 HETATM 24 C C17 ENB . . . C 2 90.051 -4.831 6.403 1 50.85 ? C17 ENB 307 A 1 HETATM 25 C C18 ENB . . . C 2 89.391 -6.174 6.022 1 53.12 ? C18 ENB 307 A 1 HETATM 26 N N4 ENB . . . C 2 90.323 -7.128 6.605 1 53.48 ? N4 ENB 307 A 1 HETATM 27 C C19 ENB . . . C 2 91.53 -6.6 6.917 1 51.75 ? C19 ENB 307 A 1 HETATM 28 O O5 ENB . . . C 2 92.422 -7.268 7.38 1 53.27 ? O5 ENB 307 A 1 HETATM 29 C C20 ENB . . . C 2 93.511 -5.732 1.751 1 61.75 ? C20 ENB 307 A 1 HETATM 30 C C21 ENB . . . C 2 93.278 -6.364 0.367 1 61.98 ? C21 ENB 307 A 1 HETATM 31 C C22 ENB . . . C 2 92.261 -4.931 2.157 1 59.8 ? C22 ENB 307 A 1 HETATM 32 C C23 ENB . . . C 2 98.457 -6.098 -2.15 1 66.38 ? C23 ENB 307 A 1 HETATM 33 C C24 ENB . . . C 2 98.939 -8.238 -0.962 1 66.98 ? C24 ENB 307 A 1 HETATM 34 C C25 ENB . . . C 2 96.638 -7.83 -1.839 1 67.35 ? C25 ENB 307 A 1 HETATM 35 C C26 ENB . . . C 2 92.365 -0.353 8.035 1 50.56 ? C26 ENB 307 A 1 HETATM 36 C C27 ENB . . . C 2 91.417 0.588 8.766 1 51.88 ? C27 ENB 307 A 1 HETATM 37 O O6 ENB . . . C 2 90.882 1.497 7.906 1 53.15 ? O6 ENB 307 A 1 HETATM 38 O O7 ENB . . . C 2 91.143 0.516 9.942 1 52.63 ? O7 ENB 307 A 1 HETATM 39 C C28 ENB . . . C 2 89.771 2.23 8.387 1 52.65 ? C28 ENB 307 A 1 HETATM 40 C C29 ENB . . . C 2 89.315 3.204 7.305 1 50.86 ? C29 ENB 307 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #