data_2D2M # _model_server_result.job_id 2OTo_S2KGhgESxCTg5PBxg _model_server_result.datetime_utc '2024-10-14 05:20:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2d2m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 2D2M # _exptl.entry_id 2D2M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 31.999 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXYGEN MOLECULE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2D2M _cell.length_a 111.498 _cell.length_b 111.498 _cell.length_c 276.835 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D2M _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 276.835 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 276.835 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 276.835 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 H N N ? 6 J N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 130 A CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 121 A CYS 121 1_555 C SG CYS 126 C CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 B SG CYS 2 B CYS 2 1_555 B SG CYS 132 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 C SG CYS 4 C CYS 4 1_555 C SG CYS 135 C CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 D SG CYS 3 D CYS 3 1_555 D SG CYS 133 D CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 E FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc2 E FE HEM . A HEM 200 1_555 F O1 OXY . A OXY 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? metalc ? metalc3 E FE HEM . A HEM 200 1_555 F O2 OXY . A OXY 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc4 B NE2 HIS 94 B HIS 94 1_555 G FE HEM . B HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc5 G FE HEM . B HEM 200 1_555 H O2 OXY . B OXY 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc6 G FE HEM . B HEM 200 1_555 H O1 OXY . B OXY 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? metalc ? metalc7 C NE2 HIS 98 C HIS 98 1_555 I FE HEM . C HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc8 I FE HEM . C HEM 200 1_555 J O2 OXY . C OXY 2201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc9 I FE HEM . C HEM 200 1_555 J O1 OXY . C OXY 2201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? metalc ? metalc10 D NE2 HIS 96 D HIS 96 1_555 K FE HEM . D HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc11 K FE HEM . D HEM 200 1_555 L O1 OXY . D OXY 3201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? metalc ? metalc12 K FE HEM . D HEM 200 1_555 L O2 OXY . D OXY 3201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? # _chem_comp.formula O2 _chem_comp.formula_weight 31.999 _chem_comp.id OXY _chem_comp.mon_nstd_flag . _chem_comp.name 'OXYGEN MOLECULE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 O1 _chem_comp_bond.atom_id_2 O2 _chem_comp_bond.comp_id OXY _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 319 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 2D2M _atom_sites.fract_transf_matrix[1][1] 0.008969 _atom_sites.fract_transf_matrix[1][2] 0.005178 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEM A 1 200 200 HEM HEM . F 6 OXY A 1 201 201 OXY O2 . G 5 HEM B 1 200 200 HEM HEM . H 6 OXY B 1 1201 1201 OXY O2 . I 5 HEM C 1 200 200 HEM HEM . J 6 OXY C 1 2201 2201 OXY O2 . K 5 HEM D 1 200 200 HEM HEM . L 6 OXY D 1 3201 3201 OXY O2 . M 7 HOH A 1 1002 1002 HOH HOH . M 7 HOH A 2 1003 1003 HOH HOH . M 7 HOH A 3 1004 1004 HOH HOH . M 7 HOH A 4 1007 1007 HOH HOH . M 7 HOH A 5 1009 1009 HOH HOH . M 7 HOH A 6 1013 1013 HOH HOH . N 7 HOH B 1 1008 1008 HOH HOH . O 7 HOH C 1 1001 1001 HOH HOH . O 7 HOH C 2 1005 1005 HOH HOH . O 7 HOH C 3 1012 1012 HOH HOH . P 7 HOH D 1 1006 1006 HOH HOH . P 7 HOH D 2 1010 1010 HOH HOH . P 7 HOH D 3 1011 1011 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OXY . . . F 6 3.652 46.174 134.859 1 97.24 ? O1 OXY 201 A 1 HETATM 2 O O2 OXY . . . F 6 3.961 45.244 135.621 1 97.56 ? O2 OXY 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 2 #