data_2D36 # _model_server_result.job_id YO0kFLddXpOP31z11GrjWA _model_server_result.datetime_utc '2025-03-06 09:00:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2d36 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 2D36 # _exptl.entry_id 2D36 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2D36 _cell.length_a 87.599 _cell.length_b 87.599 _cell.length_c 49.63 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D36 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 151.725919 33.086667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 2D36 _atom_sites.fract_transf_matrix[1][1] 0.011416 _atom_sites.fract_transf_matrix[1][2] 0.006591 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 200 200 FMN FMN . C 3 HOH A 1 201 1 HOH HOH . C 3 HOH A 2 202 2 HOH HOH . C 3 HOH A 3 203 3 HOH HOH . C 3 HOH A 4 204 4 HOH HOH . C 3 HOH A 5 205 5 HOH HOH . C 3 HOH A 6 206 6 HOH HOH . C 3 HOH A 7 207 7 HOH HOH . C 3 HOH A 8 208 8 HOH HOH . C 3 HOH A 9 209 9 HOH HOH . C 3 HOH A 10 210 10 HOH HOH . C 3 HOH A 11 211 11 HOH HOH . C 3 HOH A 12 212 12 HOH HOH . C 3 HOH A 13 213 13 HOH HOH . C 3 HOH A 14 214 14 HOH HOH . C 3 HOH A 15 215 15 HOH HOH . C 3 HOH A 16 216 16 HOH HOH . C 3 HOH A 17 217 17 HOH HOH . C 3 HOH A 18 218 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 -7.432 63.183 15.522 1 26.4 ? N1 FMN 200 A 1 HETATM 2 C C2 FMN . . . B 2 -8.461 64.065 15.778 1 26.59 ? C2 FMN 200 A 1 HETATM 3 O O2 FMN . . . B 2 -9.601 63.634 15.831 1 27.27 ? O2 FMN 200 A 1 HETATM 4 N N3 FMN . . . B 2 -8.231 65.421 15.98 1 25.61 ? N3 FMN 200 A 1 HETATM 5 C C4 FMN . . . B 2 -6.937 65.909 15.922 1 25.88 ? C4 FMN 200 A 1 HETATM 6 O O4 FMN . . . B 2 -6.689 67.051 16.308 1 23.56 ? O4 FMN 200 A 1 HETATM 7 C C4A FMN . . . B 2 -5.892 65.027 15.652 1 26.08 ? C4A FMN 200 A 1 HETATM 8 N N5 FMN . . . B 2 -4.603 65.509 15.605 1 24.96 ? N5 FMN 200 A 1 HETATM 9 C C5A FMN . . . B 2 -3.574 64.621 15.375 1 25.2 ? C5A FMN 200 A 1 HETATM 10 C C6 FMN . . . B 2 -2.282 65.113 15.263 1 25.26 ? C6 FMN 200 A 1 HETATM 11 C C7 FMN . . . B 2 -1.206 64.276 15.105 1 25.95 ? C7 FMN 200 A 1 HETATM 12 C C7M FMN . . . B 2 0.141 64.836 15.456 1 29.37 ? C7M FMN 200 A 1 HETATM 13 C C8 FMN . . . B 2 -1.409 62.921 14.871 1 26.16 ? C8 FMN 200 A 1 HETATM 14 C C8M FMN . . . B 2 -0.278 62.072 14.353 1 28.31 ? C8M FMN 200 A 1 HETATM 15 C C9 FMN . . . B 2 -2.703 62.394 14.918 1 25.37 ? C9 FMN 200 A 1 HETATM 16 C C9A FMN . . . B 2 -3.808 63.254 15.162 1 26.31 ? C9A FMN 200 A 1 HETATM 17 N N10 FMN . . . B 2 -5.122 62.777 15.229 1 26.31 ? N10 FMN 200 A 1 HETATM 18 C C10 FMN . . . B 2 -6.145 63.66 15.466 1 24.98 ? C10 FMN 200 A 1 HETATM 19 C C1' FMN . . . B 2 -5.456 61.314 15.083 1 28.29 ? C1' FMN 200 A 1 HETATM 20 C C2' FMN . . . B 2 -5.629 60.68 16.463 1 31.3 ? C2' FMN 200 A 1 HETATM 21 O O2' FMN . . . B 2 -4.43 60.755 17.224 1 31.71 ? O2' FMN 200 A 1 HETATM 22 C C3' FMN . . . B 2 -6.087 59.237 16.33 1 32.89 ? C3' FMN 200 A 1 HETATM 23 O O3' FMN . . . B 2 -7.086 59.115 15.356 1 31.71 ? O3' FMN 200 A 1 HETATM 24 C C4' FMN . . . B 2 -6.615 58.763 17.669 1 37.38 ? C4' FMN 200 A 1 HETATM 25 O O4' FMN . . . B 2 -5.475 58.556 18.482 1 36.33 ? O4' FMN 200 A 1 HETATM 26 C C5' FMN . . . B 2 -7.434 57.477 17.559 1 40.14 ? C5' FMN 200 A 1 HETATM 27 O O5' FMN . . . B 2 -6.554 56.509 17.049 1 44.91 ? O5' FMN 200 A 1 HETATM 28 P P FMN . . . B 2 -6.89 55.492 15.841 1 48.25 ? P FMN 200 A 1 HETATM 29 O O1P FMN . . . B 2 -7.876 54.509 16.376 1 48.73 ? O1P FMN 200 A 1 HETATM 30 O O2P FMN . . . B 2 -5.569 54.803 15.494 1 49.61 ? O2P FMN 200 A 1 HETATM 31 O O3P FMN . . . B 2 -7.41 56.211 14.573 1 50.79 ? O3P FMN 200 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 31 #