data_2D3Q
#
_model_server_result.job_id            l3zq1oeW5G6NTA-J0olfFQ 
_model_server_result.datetime_utc      '2024-11-25 17:34:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2d3q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":446}' 
#
_entry.id    2D3Q 
#
_exptl.entry_id    2D3Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2D3Q 
_cell.length_a            136.212 
_cell.length_b            136.212 
_cell.length_c            363.596 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2D3Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 308 A HIS 308 1_555 C FE HEM . A HEM 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc2 B NE2 HIS 308 B HIS 308 1_555 D FE HEM . B HEM 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     2D3Q 
_atom_sites.fract_transf_matrix[1][1]    0.007341 
_atom_sites.fract_transf_matrix[1][2]    0.004239 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008477 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00275 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 446 446 HEM HEM . 
D 2 HEM B 1 446 446 HEM HEM . 
E 3 HOH A 1 447 1 HOH HOH . 
E 3 HOH A 2 448 7 HOH HOH . 
E 3 HOH A 3 449 8 HOH HOH . 
E 3 HOH A 4 450 10 HOH HOH . 
E 3 HOH A 5 451 11 HOH HOH . 
F 3 HOH B 1 447 2 HOH HOH . 
F 3 HOH B 2 448 3 HOH HOH . 
F 3 HOH B 3 449 4 HOH HOH . 
F 3 HOH B 4 450 5 HOH HOH . 
F 3 HOH B 5 451 6 HOH HOH . 
F 3 HOH B 6 452 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . D 2 57.813 -8.441 18.536 1 54.37 ? CHA HEM 446 B 1 
HETATM 2 C CHB HEM . . . D 2 58.812 -9.579 22.764 1 55.14 ? CHB HEM 446 B 1 
HETATM 3 C CHC HEM . . . D 2 54.561 -11.13 23.297 1 51.34 ? CHC HEM 446 B 1 
HETATM 4 C CHD HEM . . . D 2 53.709 -10.128 18.839 1 51.52 ? CHD HEM 446 B 1 
HETATM 5 C C1A HEM . . . D 2 58.782 -8.455 19.535 1 54.67 ? C1A HEM 446 B 1 
HETATM 6 C C2A HEM . . . D 2 60.193 -8.207 19.698 1 56.48 ? C2A HEM 446 B 1 
HETATM 7 C C3A HEM . . . D 2 60.506 -8.446 21.003 1 55.56 ? C3A HEM 446 B 1 
HETATM 8 C C4A HEM . . . D 2 59.286 -8.851 21.686 1 54.91 ? C4A HEM 446 B 1 
HETATM 9 C CMA HEM . . . D 2 61.66 -8.249 21.933 1 55.73 ? CMA HEM 446 B 1 
HETATM 10 C CAA HEM . . . D 2 61.122 -7.756 18.581 1 56.4 ? CAA HEM 446 B 1 
HETATM 11 C CBA HEM . . . D 2 60.845 -6.286 18.157 1 58.06 ? CBA HEM 446 B 1 
HETATM 12 C CGA HEM . . . D 2 60.151 -5.958 16.969 1 58.84 ? CGA HEM 446 B 1 
HETATM 13 O O1A HEM . . . D 2 60.404 -6.577 15.842 1 61.61 ? O1A HEM 446 B 1 
HETATM 14 O O2A HEM . . . D 2 59.634 -5.169 17.797 1 56.25 ? O2A HEM 446 B 1 
HETATM 15 C C1B HEM . . . D 2 57.767 -10.051 23.558 1 53.42 ? C1B HEM 446 B 1 
HETATM 16 C C2B HEM . . . D 2 57.8 -10.448 24.957 1 52.7 ? C2B HEM 446 B 1 
HETATM 17 C C3B HEM . . . D 2 56.495 -10.85 25.036 1 51.31 ? C3B HEM 446 B 1 
HETATM 18 C C4B HEM . . . D 2 55.792 -10.686 23.768 1 51.3 ? C4B HEM 446 B 1 
HETATM 19 C CMB HEM . . . D 2 58.975 -10.553 25.887 1 50.1 ? CMB HEM 446 B 1 
HETATM 20 C CAB HEM . . . D 2 55.739 -11.349 26.233 1 49.07 ? CAB HEM 446 B 1 
HETATM 21 C CBB HEM . . . D 2 55.93 -11.287 27.761 1 45.99 ? CBB HEM 446 B 1 
HETATM 22 C C1C HEM . . . D 2 53.768 -11.286 22.199 1 50.63 ? C1C HEM 446 B 1 
HETATM 23 C C2C HEM . . . D 2 52.412 -11.764 22.047 1 50.44 ? C2C HEM 446 B 1 
HETATM 24 C C3C HEM . . . D 2 52.235 -11.404 20.768 1 50.54 ? C3C HEM 446 B 1 
HETATM 25 C C4C HEM . . . D 2 53.234 -10.748 19.978 1 49.88 ? C4C HEM 446 B 1 
HETATM 26 C CMC HEM . . . D 2 51.527 -12.277 23.153 1 49.35 ? CMC HEM 446 B 1 
HETATM 27 C CAC HEM . . . D 2 51.064 -11.911 19.935 1 49.73 ? CAC HEM 446 B 1 
HETATM 28 C CBC HEM . . . D 2 49.925 -12.967 19.939 1 51.28 ? CBC HEM 446 B 1 
HETATM 29 C C1D HEM . . . D 2 54.668 -9.446 18.085 1 53.15 ? C1D HEM 446 B 1 
HETATM 30 C C2D HEM . . . D 2 54.766 -8.932 16.72 1 54.76 ? C2D HEM 446 B 1 
HETATM 31 C C3D HEM . . . D 2 56.043 -8.51 16.56 1 54.63 ? C3D HEM 446 B 1 
HETATM 32 C C4D HEM . . . D 2 56.64 -8.804 17.866 1 53.55 ? C4D HEM 446 B 1 
HETATM 33 C CMD HEM . . . D 2 53.717 -8.991 15.655 1 53.58 ? CMD HEM 446 B 1 
HETATM 34 C CAD HEM . . . D 2 56.784 -7.85 15.438 1 56.67 ? CAD HEM 446 B 1 
HETATM 35 C CBD HEM . . . D 2 57.239 -8.994 14.431 1 60.03 ? CBD HEM 446 B 1 
HETATM 36 C CGD HEM . . . D 2 57.565 -8.246 13.288 1 61 ? CGD HEM 446 B 1 
HETATM 37 O O1D HEM . . . D 2 58.642 -8.448 12.645 1 61.96 ? O1D HEM 446 B 1 
HETATM 38 O O2D HEM . . . D 2 57.056 -7.312 12.611 1 59.93 ? O2D HEM 446 B 1 
HETATM 39 N NA HEM . . . D 2 58.274 -8.839 20.753 1 53.45 ? NA HEM 446 B 1 
HETATM 40 N NB HEM . . . D 2 56.624 -10.157 22.783 1 50.94 ? NB HEM 446 B 1 
HETATM 41 N NC HEM . . . D 2 54.162 -10.72 20.975 1 49.79 ? NC HEM 446 B 1 
HETATM 42 N ND HEM . . . D 2 55.844 -9.369 18.813 1 51.81 ? ND HEM 446 B 1 
HETATM 43 FE FE HEM . . . D 2 56.309 -9.947 20.744 1 49.23 ? FE HEM 446 B 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           43 
#