data_2D3T
#
_model_server_result.job_id            -SK3P6vVowykqD0QgXcXNA 
_model_server_result.datetime_utc      '2024-11-15 17:45:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2d3t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1002}' 
#
_entry.id    2D3T 
#
_exptl.entry_id    2D3T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2D3T 
_cell.length_a            95.227 
_cell.length_b            137.552 
_cell.length_c            198.139 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2D3T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 326 n n 
PA O2A NAD sing 327 n n 
PA O5B NAD sing 328 n n 
PA O3 NAD sing 329 n n 
O2A HOA2 NAD sing 330 n n 
O5B C5B NAD sing 331 n n 
C5B C4B NAD sing 332 n n 
C5B H51A NAD sing 333 n n 
C5B H52A NAD sing 334 n n 
C4B O4B NAD sing 335 n n 
C4B C3B NAD sing 336 n n 
C4B H4B NAD sing 337 n n 
O4B C1B NAD sing 338 n n 
C3B O3B NAD sing 339 n n 
C3B C2B NAD sing 340 n n 
C3B H3B NAD sing 341 n n 
O3B HO3A NAD sing 342 n n 
C2B O2B NAD sing 343 n n 
C2B C1B NAD sing 344 n n 
C2B H2B NAD sing 345 n n 
O2B HO2A NAD sing 346 n n 
C1B N9A NAD sing 347 n n 
C1B H1B NAD sing 348 n n 
N9A C8A NAD sing 349 n y 
N9A C4A NAD sing 350 n y 
C8A N7A NAD doub 351 n y 
C8A H8A NAD sing 352 n n 
N7A C5A NAD sing 353 n y 
C5A C6A NAD sing 354 n y 
C5A C4A NAD doub 355 n y 
C6A N6A NAD sing 356 n n 
C6A N1A NAD doub 357 n y 
N6A H61A NAD sing 358 n n 
N6A H62A NAD sing 359 n n 
N1A C2A NAD sing 360 n y 
C2A N3A NAD doub 361 n y 
C2A H2A NAD sing 362 n n 
N3A C4A NAD sing 363 n y 
O3 PN NAD sing 364 n n 
PN O1N NAD doub 365 n n 
PN O2N NAD sing 366 n n 
PN O5D NAD sing 367 n n 
O5D C5D NAD sing 368 n n 
C5D C4D NAD sing 369 n n 
C5D H51N NAD sing 370 n n 
C5D H52N NAD sing 371 n n 
C4D O4D NAD sing 372 n n 
C4D C3D NAD sing 373 n n 
C4D H4D NAD sing 374 n n 
O4D C1D NAD sing 375 n n 
C3D O3D NAD sing 376 n n 
C3D C2D NAD sing 377 n n 
C3D H3D NAD sing 378 n n 
O3D HO3N NAD sing 379 n n 
C2D O2D NAD sing 380 n n 
C2D C1D NAD sing 381 n n 
C2D H2D NAD sing 382 n n 
O2D HO2N NAD sing 383 n n 
C1D N1N NAD sing 384 n n 
C1D H1D NAD sing 385 n n 
N1N C2N NAD sing 386 n y 
N1N C6N NAD doub 387 n y 
C2N C3N NAD doub 388 n y 
C2N H2N NAD sing 389 n n 
C3N C7N NAD sing 390 n n 
C3N C4N NAD sing 391 n y 
C7N O7N NAD doub 392 n n 
C7N N7N NAD sing 393 n n 
N7N H71N NAD sing 394 n n 
N7N H72N NAD sing 395 n n 
C4N C5N NAD doub 396 n y 
C4N H4N NAD sing 397 n n 
C5N C6N NAD sing 398 n y 
C5N H5N NAD sing 399 n n 
C6N H6N NAD sing 400 n n 
#
_atom_sites.entry_id                     2D3T 
_atom_sites.fract_transf_matrix[1][1]    0.010501 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00727 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005047 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAD A 1 1001 1001 NAD NAD . 
F 3 NAD B 1 1002 1001 NAD NAD . 
G 4 ACO C 1 1003 1001 ACO ACC . 
H 4 ACO D 1 1004 1001 ACO ACC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . F 3 36.918 -22.52 46.033 1 56.23 ? PA NAD 1002 B 1 
HETATM 2 O O1A NAD . . . F 3 36.861 -21.096 46.476 1 56.23 ? O1A NAD 1002 B 1 
HETATM 3 O O2A NAD . . . F 3 38.201 -22.967 45.432 1 56.23 ? O2A NAD 1002 B 1 
HETATM 4 O O5B NAD . . . F 3 36.648 -23.462 47.294 1 56.23 ? O5B NAD 1002 B 1 
HETATM 5 C C5B NAD . . . F 3 36.642 -24.89 47.198 1 56.23 ? C5B NAD 1002 B 1 
HETATM 6 C C4B NAD . . . F 3 36.151 -25.455 48.514 1 56.23 ? C4B NAD 1002 B 1 
HETATM 7 O O4B NAD . . . F 3 35.681 -26.829 48.321 1 56.23 ? O4B NAD 1002 B 1 
HETATM 8 C C3B NAD . . . F 3 37.262 -25.555 49.566 1 56.23 ? C3B NAD 1002 B 1 
HETATM 9 O O3B NAD . . . F 3 36.781 -25.151 50.846 1 56.23 ? O3B NAD 1002 B 1 
HETATM 10 C C2B NAD . . . F 3 37.641 -27.034 49.553 1 56.23 ? C2B NAD 1002 B 1 
HETATM 11 O O2B NAD . . . F 3 38.182 -27.488 50.778 1 56.23 ? O2B NAD 1002 B 1 
HETATM 12 C C1B NAD . . . F 3 36.281 -27.672 49.291 1 56.23 ? C1B NAD 1002 B 1 
HETATM 13 N N9A NAD . . . F 3 36.378 -29.041 48.742 1 56.23 ? N9A NAD 1002 B 1 
HETATM 14 C C8A NAD . . . F 3 37.069 -29.483 47.629 1 56.23 ? C8A NAD 1002 B 1 
HETATM 15 N N7A NAD . . . F 3 36.955 -30.773 47.405 1 56.23 ? N7A NAD 1002 B 1 
HETATM 16 C C5A NAD . . . F 3 36.157 -31.225 48.448 1 56.23 ? C5A NAD 1002 B 1 
HETATM 17 C C6A NAD . . . F 3 35.634 -32.512 48.792 1 56.23 ? C6A NAD 1002 B 1 
HETATM 18 N N6A NAD . . . F 3 35.903 -33.622 48.099 1 56.23 ? N6A NAD 1002 B 1 
HETATM 19 N N1A NAD . . . F 3 34.845 -32.619 49.918 1 56.23 ? N1A NAD 1002 B 1 
HETATM 20 C C2A NAD . . . F 3 34.569 -31.5 50.634 1 56.23 ? C2A NAD 1002 B 1 
HETATM 21 N N3A NAD . . . F 3 34.991 -30.238 50.399 1 56.23 ? N3A NAD 1002 B 1 
HETATM 22 C C4A NAD . . . F 3 35.784 -30.166 49.279 1 56.23 ? C4A NAD 1002 B 1 
HETATM 23 O O3 NAD . . . F 3 35.761 -22.738 44.939 1 56.23 ? O3 NAD 1002 B 1 
HETATM 24 P PN NAD . . . F 3 34.27 -22.169 45.154 1 56.23 ? PN NAD 1002 B 1 
HETATM 25 O O1N NAD . . . F 3 34.026 -21.98 46.606 1 56.23 ? O1N NAD 1002 B 1 
HETATM 26 O O2N NAD . . . F 3 34.146 -20.951 44.305 1 56.23 ? O2N NAD 1002 B 1 
HETATM 27 O O5D NAD . . . F 3 33.214 -23.243 44.633 1 56.23 ? O5D NAD 1002 B 1 
HETATM 28 C C5D NAD . . . F 3 33.327 -23.792 43.318 1 56.23 ? C5D NAD 1002 B 1 
HETATM 29 C C4D NAD . . . F 3 31.952 -24.004 42.73 1 56.23 ? C4D NAD 1002 B 1 
HETATM 30 O O4D NAD . . . F 3 31.299 -22.703 42.577 1 56.23 ? O4D NAD 1002 B 1 
HETATM 31 C C3D NAD . . . F 3 31.997 -24.583 41.306 1 56.23 ? C3D NAD 1002 B 1 
HETATM 32 O O3D NAD . . . F 3 30.933 -25.492 41.097 1 56.23 ? O3D NAD 1002 B 1 
HETATM 33 C C2D NAD . . . F 3 31.865 -23.351 40.411 1 56.23 ? C2D NAD 1002 B 1 
HETATM 34 O O2D NAD . . . F 3 31.334 -23.657 39.13 1 56.23 ? O2D NAD 1002 B 1 
HETATM 35 C C1D NAD . . . F 3 30.891 -22.504 41.235 1 56.23 ? C1D NAD 1002 B 1 
HETATM 36 N N1N NAD . . . F 3 30.922 -21.073 40.803 1 56.23 ? N1N NAD 1002 B 1 
HETATM 37 C C2N NAD . . . F 3 31.989 -20.255 41.152 1 56.23 ? C2N NAD 1002 B 1 
HETATM 38 C C3N NAD . . . F 3 32.021 -18.921 40.752 1 56.23 ? C3N NAD 1002 B 1 
HETATM 39 C C7N NAD . . . F 3 33.224 -17.96 41.133 1 56.23 ? C7N NAD 1002 B 1 
HETATM 40 O O7N NAD . . . F 3 33.248 -17.407 42.22 1 56.23 ? O7N NAD 1002 B 1 
HETATM 41 N N7N NAD . . . F 3 34.179 -17.812 40.184 1 56.23 ? N7N NAD 1002 B 1 
HETATM 42 C C4N NAD . . . F 3 30.954 -18.338 39.967 1 56.23 ? C4N NAD 1002 B 1 
HETATM 43 C C5N NAD . . . F 3 29.915 -19.25 39.66 1 56.23 ? C5N NAD 1002 B 1 
HETATM 44 C C6N NAD . . . F 3 29.816 -20.58 40.022 1 56.23 ? C6N NAD 1002 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#