data_2D4D # _model_server_result.job_id wNqjmb10exEhfmgHv0i3sA _model_server_result.datetime_utc '2024-11-22 08:49:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2d4d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 2D4D # _exptl.entry_id 2D4D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.56 _cell.angle_gamma 90 _cell.entry_id 2D4D _cell.length_a 77.423 _cell.length_b 28.776 _cell.length_c 57.241 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D4D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 25 1_555 A SG CYS 81 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc1 A O HIS 85 A HIS 84 1_555 B NA NA . A NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc2 A O LEU 88 A LEU 87 1_555 B NA NA . A NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc3 B NA NA . A NA 101 1_555 C O HOH . A HOH 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc4 B NA NA . A NA 101 1_555 C O HOH . A HOH 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc5 B NA NA . A NA 101 1_555 C O HOH . A HOH 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc6 B NA NA . A NA 101 1_555 C O HOH . A HOH 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2D4D _atom_sites.fract_transf_matrix[1][1] 0.012916 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008569 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034751 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020965 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 101 1 NA NA . C 3 HOH A 1 102 1 HOH HOH . C 3 HOH A 2 103 2 HOH HOH . C 3 HOH A 3 104 3 HOH HOH . C 3 HOH A 4 105 4 HOH HOH . C 3 HOH A 5 106 5 HOH HOH . C 3 HOH A 6 107 6 HOH HOH . C 3 HOH A 7 108 7 HOH HOH . C 3 HOH A 8 109 8 HOH HOH . C 3 HOH A 9 110 9 HOH HOH . C 3 HOH A 10 111 10 HOH HOH . C 3 HOH A 11 112 11 HOH HOH . C 3 HOH A 12 113 12 HOH HOH . C 3 HOH A 13 114 13 HOH HOH . C 3 HOH A 14 115 14 HOH HOH . C 3 HOH A 15 116 15 HOH HOH . C 3 HOH A 16 117 16 HOH HOH . C 3 HOH A 17 118 17 HOH HOH . C 3 HOH A 18 119 18 HOH HOH . C 3 HOH A 19 120 19 HOH HOH . C 3 HOH A 20 121 20 HOH HOH . C 3 HOH A 21 122 21 HOH HOH . C 3 HOH A 22 123 22 HOH HOH . C 3 HOH A 23 124 23 HOH HOH . C 3 HOH A 24 125 24 HOH HOH . C 3 HOH A 25 126 25 HOH HOH . C 3 HOH A 26 127 26 HOH HOH . C 3 HOH A 27 128 27 HOH HOH . C 3 HOH A 28 129 28 HOH HOH . C 3 HOH A 29 130 29 HOH HOH . C 3 HOH A 30 131 30 HOH HOH . C 3 HOH A 31 132 31 HOH HOH . C 3 HOH A 32 133 32 HOH HOH . C 3 HOH A 33 134 33 HOH HOH . C 3 HOH A 34 135 34 HOH HOH . C 3 HOH A 35 136 35 HOH HOH . C 3 HOH A 36 137 36 HOH HOH . C 3 HOH A 37 138 37 HOH HOH . C 3 HOH A 38 139 38 HOH HOH . C 3 HOH A 39 140 39 HOH HOH . C 3 HOH A 40 141 40 HOH HOH . C 3 HOH A 41 142 41 HOH HOH . C 3 HOH A 42 143 42 HOH HOH . C 3 HOH A 43 144 43 HOH HOH . C 3 HOH A 44 145 44 HOH HOH . C 3 HOH A 45 146 45 HOH HOH . C 3 HOH A 46 147 46 HOH HOH . C 3 HOH A 47 148 47 HOH HOH . C 3 HOH A 48 149 48 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -6.282 _atom_site.Cartn_y -19.979 _atom_site.Cartn_z -15.426 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #