data_2D4J
#
_model_server_result.job_id            PijtwvABaFOtUNQCgxMy7w 
_model_server_result.datetime_utc      '2024-12-02 23:35:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2d4j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":204}' 
#
_entry.id    2D4J 
#
_exptl.entry_id    2D4J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.005 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NITRATE ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.33 
_cell.angle_gamma         90 
_cell.entry_id            2D4J 
_cell.length_a            26.46 
_cell.length_b            58.18 
_cell.length_c            30.85 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2D4J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
#
_chem_comp.formula           'N O3 -1' 
_chem_comp.formula_weight    62.005 
_chem_comp.id                NO3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NITRATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N O1 NO3 doub 237 n n 
N O2 NO3 sing 238 n n 
N O3 NO3 sing 239 n n 
#
_atom_sites.entry_id                     2D4J 
_atom_sites.fract_transf_matrix[1][1]    0.037793 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.014758 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017188 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.034799 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NO3 A 1 201 201 NO3 NO3 . 
C 2 NO3 A 1 202 202 NO3 NO3 . 
D 2 NO3 A 1 203 203 NO3 NO3 . 
E 2 NO3 A 1 204 204 NO3 NO3 . 
F 3 DOD A 1 205 205 DOD HOH . 
F 3 DOD A 2 206 206 DOD HOH . 
F 3 DOD A 3 207 207 DOD HOH . 
F 3 DOD A 4 208 208 DOD HOH . 
F 3 DOD A 5 209 209 DOD HOH . 
F 3 DOD A 6 210 210 DOD HOH . 
F 3 DOD A 7 211 211 DOD HOH . 
F 3 DOD A 8 212 212 DOD HOH . 
F 3 DOD A 9 213 213 DOD HOH . 
F 3 DOD A 10 214 214 DOD HOH . 
F 3 DOD A 11 215 215 DOD HOH . 
F 3 DOD A 12 216 216 DOD HOH . 
F 3 DOD A 13 217 217 DOD HOH . 
F 3 DOD A 14 218 218 DOD HOH . 
F 3 DOD A 15 219 219 DOD HOH . 
F 3 DOD A 16 220 220 DOD HOH . 
F 3 DOD A 17 221 221 DOD HOH . 
F 3 DOD A 18 222 222 DOD HOH . 
F 3 DOD A 19 223 223 DOD HOH . 
F 3 DOD A 20 224 224 DOD HOH . 
F 3 DOD A 21 225 225 DOD HOH . 
F 3 DOD A 22 226 226 DOD HOH . 
F 3 DOD A 23 227 227 DOD HOH . 
F 3 DOD A 24 228 228 DOD HOH . 
F 3 DOD A 25 229 229 DOD HOH . 
F 3 DOD A 26 230 230 DOD HOH . 
F 3 DOD A 27 231 231 DOD HOH . 
F 3 DOD A 28 232 232 DOD HOH . 
F 3 DOD A 29 233 233 DOD HOH . 
F 3 DOD A 30 234 234 DOD HOH . 
F 3 DOD A 31 235 235 DOD HOH . 
F 3 DOD A 32 236 236 DOD HOH . 
F 3 DOD A 33 237 237 DOD HOH . 
F 3 DOD A 34 238 238 DOD HOH . 
F 3 DOD A 35 239 239 DOD HOH . 
F 3 DOD A 36 240 240 DOD HOH . 
F 3 DOD A 37 241 241 DOD HOH . 
F 3 DOD A 38 242 242 DOD HOH . 
F 3 DOD A 39 243 243 DOD HOH . 
F 3 DOD A 40 244 244 DOD HOH . 
F 3 DOD A 41 245 245 DOD HOH . 
F 3 DOD A 42 246 246 DOD HOH . 
F 3 DOD A 43 247 247 DOD HOH . 
F 3 DOD A 44 248 248 DOD HOH . 
F 3 DOD A 45 249 249 DOD HOH . 
F 3 DOD A 46 250 250 DOD HOH . 
F 3 DOD A 47 251 251 DOD HOH . 
F 3 DOD A 48 252 252 DOD HOH . 
F 3 DOD A 49 253 253 DOD HOH . 
F 3 DOD A 50 254 254 DOD HOH . 
F 3 DOD A 51 255 255 DOD HOH . 
F 3 DOD A 52 256 256 DOD HOH . 
F 3 DOD A 53 257 257 DOD HOH . 
F 3 DOD A 54 258 258 DOD HOH . 
F 3 DOD A 55 259 259 DOD HOH . 
F 3 DOD A 56 260 260 DOD HOH . 
F 3 DOD A 57 261 261 DOD HOH . 
F 3 DOD A 58 262 262 DOD HOH . 
F 3 DOD A 59 263 263 DOD HOH . 
F 3 DOD A 60 264 264 DOD HOH . 
F 3 DOD A 61 265 265 DOD HOH . 
F 3 DOD A 62 266 266 DOD HOH . 
F 3 DOD A 63 267 267 DOD HOH . 
F 3 DOD A 64 268 268 DOD HOH . 
F 3 DOD A 65 269 269 DOD HOH . 
F 3 DOD A 66 270 270 DOD HOH . 
F 3 DOD A 67 271 271 DOD HOH . 
F 3 DOD A 68 272 272 DOD HOH . 
F 3 DOD A 69 273 273 DOD HOH . 
F 3 DOD A 70 274 274 DOD HOH . 
F 3 DOD A 71 275 275 DOD HOH . 
F 3 DOD A 72 276 276 DOD HOH . 
F 3 DOD A 73 277 277 DOD HOH . 
F 3 DOD A 74 278 278 DOD HOH . 
F 3 DOD A 75 279 279 DOD HOH . 
F 3 DOD A 76 280 280 DOD HOH . 
F 3 DOD A 77 281 281 DOD HOH . 
F 3 DOD A 78 282 282 DOD HOH . 
F 3 DOD A 79 283 283 DOD HOH . 
F 3 DOD A 80 284 284 DOD HOH . 
F 3 DOD A 81 285 285 DOD HOH . 
F 3 DOD A 82 286 286 DOD HOH . 
F 3 DOD A 83 287 287 DOD HOH . 
F 3 DOD A 84 288 288 DOD HOH . 
F 3 DOD A 85 289 289 DOD HOH . 
F 3 DOD A 86 290 290 DOD HOH . 
F 3 DOD A 87 291 291 DOD HOH . 
F 3 DOD A 88 292 292 DOD HOH . 
F 3 DOD A 89 293 293 DOD HOH . 
F 3 DOD A 90 294 294 DOD HOH . 
F 3 DOD A 91 295 295 DOD HOH . 
F 3 DOD A 92 296 296 DOD HOH . 
F 3 DOD A 93 297 297 DOD HOH . 
F 3 DOD A 94 298 298 DOD HOH . 
F 3 DOD A 95 299 299 DOD HOH . 
F 3 DOD A 96 300 300 DOD HOH . 
F 3 DOD A 97 301 301 DOD HOH . 
F 3 DOD A 98 302 302 DOD HOH . 
F 3 DOD A 99 303 303 DOD HOH . 
F 3 DOD A 100 304 304 DOD HOH . 
F 3 DOD A 101 305 305 DOD HOH . 
F 3 DOD A 102 306 306 DOD HOH . 
F 3 DOD A 103 307 307 DOD HOH . 
F 3 DOD A 104 308 308 DOD HOH . 
F 3 DOD A 105 309 309 DOD HOH . 
F 3 DOD A 106 310 310 DOD HOH . 
F 3 DOD A 107 311 311 DOD HOH . 
F 3 DOD A 108 312 312 DOD HOH . 
F 3 DOD A 109 313 313 DOD HOH . 
F 3 DOD A 110 314 314 DOD HOH . 
F 3 DOD A 111 315 315 DOD HOH . 
F 3 DOD A 112 316 316 DOD HOH . 
F 3 DOD A 113 317 317 DOD HOH . 
F 3 DOD A 114 318 318 DOD HOH . 
F 3 DOD A 115 319 319 DOD HOH . 
F 3 DOD A 116 320 320 DOD HOH . 
F 3 DOD A 117 321 321 DOD HOH . 
F 3 DOD A 118 322 322 DOD HOH . 
F 3 DOD A 119 323 323 DOD HOH . 
F 3 DOD A 120 324 324 DOD HOH . 
F 3 DOD A 121 325 325 DOD HOH . 
F 3 DOD A 122 326 326 DOD HOH . 
F 3 DOD A 123 327 327 DOD HOH . 
F 3 DOD A 124 328 328 DOD HOH . 
F 3 DOD A 125 329 329 DOD HOH . 
F 3 DOD A 126 330 330 DOD HOH . 
F 3 DOD A 127 331 331 DOD HOH . 
F 3 DOD A 128 332 332 DOD HOH . 
F 3 DOD A 129 333 333 DOD HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N NO3 . . . E 2 3.165 49.017 14.327 0.61 69.73 ? N NO3 204 A 1 
HETATM 2 O O1 NO3 . . . E 2 2.158 48.58 14.9 0.61 67.82 ? O1 NO3 204 A 1 
HETATM 3 O O2 NO3 . . . E 2 4.059 49.58 14.977 0.61 67.82 ? O2 NO3 204 A 1 
HETATM 4 O O3 NO3 . . . E 2 3.249 48.887 13.096 0.61 71.92 ? O3 NO3 204 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#