data_2D4N # _model_server_result.job_id U75vSJn5ZU-L6C81-q1sRw _model_server_result.datetime_utc '2024-11-05 00:30:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2d4n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 2D4N # _exptl.entry_id 2D4N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2D4N _cell.length_a 61.071 _cell.length_b 61.071 _cell.length_c 64.357 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D4N _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -y+2,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 61.071 105.778075 0 3 'crystal symmetry operation' 3_575 -x+y,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -61.071 105.778075 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O2G DUP . A DUP 777 1_555 B MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc2 C O1B DUP . A DUP 777 1_555 B MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc3 C O1A DUP . A DUP 777 1_555 B MG MG . A MG 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc4 B MG MG . A MG 999 1_555 E O HOH . A HOH 1127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc5 B MG MG . A MG 999 1_555 E O HOH . A HOH 1128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc6 B MG MG . A MG 999 1_555 E O HOH . A HOH 1130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 379 n n C C2 TRS sing 380 n n C C3 TRS sing 381 n n C N TRS sing 382 n n C1 O1 TRS sing 383 n n C1 H11 TRS sing 384 n n C1 H12 TRS sing 385 n n C2 O2 TRS sing 386 n n C2 H21 TRS sing 387 n n C2 H22 TRS sing 388 n n C3 O3 TRS sing 389 n n C3 H31 TRS sing 390 n n C3 H32 TRS sing 391 n n N HN1 TRS sing 392 n n N HN2 TRS sing 393 n n N HN3 TRS sing 394 n n O1 HO1 TRS sing 395 n n O2 HO2 TRS sing 396 n n O3 HO3 TRS sing 397 n n # _atom_sites.entry_id 2D4N _atom_sites.fract_transf_matrix[1][1] 0.016374 _atom_sites.fract_transf_matrix[1][2] 0.009454 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015538 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 999 999 MG MG . C 3 DUP A 1 777 777 DUP UNP . D 4 TRS A 1 1001 1 TRS TRS . E 5 HOH A 1 1002 1 HOH HOH . E 5 HOH A 2 1003 2 HOH HOH . E 5 HOH A 3 1004 3 HOH HOH . E 5 HOH A 4 1005 4 HOH HOH . E 5 HOH A 5 1006 5 HOH HOH . E 5 HOH A 6 1007 6 HOH HOH . E 5 HOH A 7 1008 8 HOH HOH . E 5 HOH A 8 1009 9 HOH HOH . E 5 HOH A 9 1010 10 HOH HOH . E 5 HOH A 10 1011 11 HOH HOH . E 5 HOH A 11 1012 12 HOH HOH . E 5 HOH A 12 1013 13 HOH HOH . E 5 HOH A 13 1014 15 HOH HOH . E 5 HOH A 14 1015 16 HOH HOH . E 5 HOH A 15 1016 17 HOH HOH . E 5 HOH A 16 1017 18 HOH HOH . E 5 HOH A 17 1018 19 HOH HOH . E 5 HOH A 18 1019 20 HOH HOH . E 5 HOH A 19 1020 21 HOH HOH . E 5 HOH A 20 1021 22 HOH HOH . E 5 HOH A 21 1022 23 HOH HOH . E 5 HOH A 22 1023 24 HOH HOH . E 5 HOH A 23 1024 25 HOH HOH . E 5 HOH A 24 1025 26 HOH HOH . E 5 HOH A 25 1026 27 HOH HOH . E 5 HOH A 26 1027 28 HOH HOH . E 5 HOH A 27 1028 29 HOH HOH . E 5 HOH A 28 1029 30 HOH HOH . E 5 HOH A 29 1030 31 HOH HOH . E 5 HOH A 30 1031 32 HOH HOH . E 5 HOH A 31 1032 33 HOH HOH . E 5 HOH A 32 1033 34 HOH HOH . E 5 HOH A 33 1034 35 HOH HOH . E 5 HOH A 34 1035 36 HOH HOH . E 5 HOH A 35 1036 37 HOH HOH . E 5 HOH A 36 1037 38 HOH HOH . E 5 HOH A 37 1038 39 HOH HOH . E 5 HOH A 38 1039 40 HOH HOH . E 5 HOH A 39 1040 42 HOH HOH . E 5 HOH A 40 1041 43 HOH HOH . E 5 HOH A 41 1042 44 HOH HOH . E 5 HOH A 42 1043 45 HOH HOH . E 5 HOH A 43 1044 46 HOH HOH . E 5 HOH A 44 1045 47 HOH HOH . E 5 HOH A 45 1046 48 HOH HOH . E 5 HOH A 46 1047 49 HOH HOH . E 5 HOH A 47 1048 50 HOH HOH . E 5 HOH A 48 1049 51 HOH HOH . E 5 HOH A 49 1050 52 HOH HOH . E 5 HOH A 50 1051 53 HOH HOH . E 5 HOH A 51 1052 54 HOH HOH . E 5 HOH A 52 1053 55 HOH HOH . E 5 HOH A 53 1054 56 HOH HOH . E 5 HOH A 54 1055 57 HOH HOH . E 5 HOH A 55 1056 58 HOH HOH . E 5 HOH A 56 1057 59 HOH HOH . E 5 HOH A 57 1058 60 HOH HOH . E 5 HOH A 58 1059 61 HOH HOH . E 5 HOH A 59 1060 62 HOH HOH . E 5 HOH A 60 1061 63 HOH HOH . E 5 HOH A 61 1062 64 HOH HOH . E 5 HOH A 62 1063 65 HOH HOH . E 5 HOH A 63 1064 66 HOH HOH . E 5 HOH A 64 1065 67 HOH HOH . E 5 HOH A 65 1066 68 HOH HOH . E 5 HOH A 66 1067 69 HOH HOH . E 5 HOH A 67 1068 70 HOH HOH . E 5 HOH A 68 1069 71 HOH HOH . E 5 HOH A 69 1070 72 HOH HOH . E 5 HOH A 70 1071 73 HOH HOH . E 5 HOH A 71 1072 74 HOH HOH . E 5 HOH A 72 1073 75 HOH HOH . E 5 HOH A 73 1074 76 HOH HOH . E 5 HOH A 74 1075 77 HOH HOH . E 5 HOH A 75 1076 78 HOH HOH . E 5 HOH A 76 1077 79 HOH HOH . E 5 HOH A 77 1078 80 HOH HOH . E 5 HOH A 78 1079 81 HOH HOH . E 5 HOH A 79 1080 82 HOH HOH . E 5 HOH A 80 1081 83 HOH HOH . E 5 HOH A 81 1082 84 HOH HOH . E 5 HOH A 82 1083 85 HOH HOH . E 5 HOH A 83 1084 86 HOH HOH . E 5 HOH A 84 1085 87 HOH HOH . E 5 HOH A 85 1086 88 HOH HOH . E 5 HOH A 86 1087 89 HOH HOH . E 5 HOH A 87 1088 90 HOH HOH . E 5 HOH A 88 1089 91 HOH HOH . E 5 HOH A 89 1090 92 HOH HOH . E 5 HOH A 90 1091 93 HOH HOH . E 5 HOH A 91 1092 94 HOH HOH . E 5 HOH A 92 1093 95 HOH HOH . E 5 HOH A 93 1094 96 HOH HOH . E 5 HOH A 94 1095 97 HOH HOH . E 5 HOH A 95 1096 98 HOH HOH . E 5 HOH A 96 1097 99 HOH HOH . E 5 HOH A 97 1098 100 HOH HOH . E 5 HOH A 98 1099 101 HOH HOH . E 5 HOH A 99 1100 102 HOH HOH . E 5 HOH A 100 1101 103 HOH HOH . E 5 HOH A 101 1102 104 HOH HOH . E 5 HOH A 102 1103 105 HOH HOH . E 5 HOH A 103 1104 106 HOH HOH . E 5 HOH A 104 1105 107 HOH HOH . E 5 HOH A 105 1106 108 HOH HOH . E 5 HOH A 106 1107 109 HOH HOH . E 5 HOH A 107 1108 111 HOH HOH . E 5 HOH A 108 1109 112 HOH HOH . E 5 HOH A 109 1110 113 HOH HOH . E 5 HOH A 110 1111 114 HOH HOH . E 5 HOH A 111 1112 115 HOH HOH . E 5 HOH A 112 1113 116 HOH HOH . E 5 HOH A 113 1114 118 HOH HOH . E 5 HOH A 114 1115 120 HOH HOH . E 5 HOH A 115 1116 121 HOH HOH . E 5 HOH A 116 1117 122 HOH HOH . E 5 HOH A 117 1118 125 HOH HOH . E 5 HOH A 118 1119 126 HOH HOH . E 5 HOH A 119 1120 127 HOH HOH . E 5 HOH A 120 1121 128 HOH HOH . E 5 HOH A 121 1122 129 HOH HOH . E 5 HOH A 122 1123 130 HOH HOH . E 5 HOH A 123 1124 131 HOH HOH . E 5 HOH A 124 1125 132 HOH HOH . E 5 HOH A 125 1126 133 HOH HOH . E 5 HOH A 126 1127 134 HOH HOH . E 5 HOH A 127 1128 135 HOH HOH . E 5 HOH A 128 1129 136 HOH HOH . E 5 HOH A 129 1130 137 HOH HOH . E 5 HOH A 130 1131 138 HOH HOH . E 5 HOH A 131 1132 139 HOH HOH . E 5 HOH A 132 1133 140 HOH HOH . E 5 HOH A 133 1134 141 HOH HOH . E 5 HOH A 134 1135 142 HOH HOH . E 5 HOH A 135 1136 143 HOH HOH . E 5 HOH A 136 1137 144 HOH HOH . E 5 HOH A 137 1138 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 4 -0.08 70.484 24.791 0.33 19.46 ? C TRS 1001 A 1 HETATM 2 C C1 TRS . . . D 4 -0.385 71.893 24.299 0.33 28.06 ? C1 TRS 1001 A 1 HETATM 3 C C2 TRS . . . D 4 1.308 70.046 24.371 0.33 28.02 ? C2 TRS 1001 A 1 HETATM 4 C C3 TRS . . . D 4 -1.075 69.428 24.297 0.33 28.42 ? C3 TRS 1001 A 1 HETATM 5 N N TRS . . . D 4 -0.083 70.504 26.221 0.33 31.35 ? N TRS 1001 A 1 HETATM 6 O O1 TRS . . . D 4 0.345 72.914 24.977 0.33 23.68 ? O1 TRS 1001 A 1 HETATM 7 O O2 TRS . . . D 4 1.426 68.634 24.369 0.33 40.7 ? O2 TRS 1001 A 1 HETATM 8 O O3 TRS . . . D 4 -2.456 69.75 24.327 0.33 10.31 ? O3 TRS 1001 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #