data_2D4Q
#
_model_server_result.job_id            lLP9j5IKRfpftLP9U4glsg 
_model_server_result.datetime_utc      '2024-11-20 03:37:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2d4q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":602}' 
#
_entry.id    2D4Q 
#
_exptl.entry_id    2D4Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.959 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PYROPHOSPHATE 2-' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2D4Q 
_cell.length_a            113.5 
_cell.length_b            113.5 
_cell.length_c            125.6 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2D4Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'H2 O7 P2 -2' 
_chem_comp.formula_weight    175.959 
_chem_comp.id                POP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PYROPHOSPHATE 2-' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1 POP doub 367 n n 
P1 O2 POP sing 368 n n 
P1 O3 POP sing 369 n n 
P1 O POP sing 370 n n 
O2 HO2 POP sing 371 n n 
O P2 POP sing 372 n n 
P2 O4 POP doub 373 n n 
P2 O5 POP sing 374 n n 
P2 O6 POP sing 375 n n 
O5 HO5 POP sing 376 n n 
#
_atom_sites.entry_id                     2D4Q 
_atom_sites.fract_transf_matrix[1][1]    0.008811 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008811 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007962 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 OXN A 1 701 701 OXN OXN . 
D 2 OXN B 1 702 702 OXN OXN . 
E 3 POP B 1 601 601 POP POP . 
F 3 POP B 1 602 602 POP POP . 
G 4 HOH A 1 6 6 HOH HOH . 
G 4 HOH A 2 7 7 HOH HOH . 
G 4 HOH A 3 9 9 HOH HOH . 
G 4 HOH A 4 14 14 HOH HOH . 
G 4 HOH A 5 15 15 HOH HOH . 
G 4 HOH A 6 18 18 HOH HOH . 
G 4 HOH A 7 19 19 HOH HOH . 
G 4 HOH A 8 20 20 HOH HOH . 
G 4 HOH A 9 23 23 HOH HOH . 
G 4 HOH A 10 25 25 HOH HOH . 
G 4 HOH A 11 27 27 HOH HOH . 
G 4 HOH A 12 28 28 HOH HOH . 
G 4 HOH A 13 29 29 HOH HOH . 
G 4 HOH A 14 30 30 HOH HOH . 
G 4 HOH A 15 31 31 HOH HOH . 
G 4 HOH A 16 36 36 HOH HOH . 
G 4 HOH A 17 37 37 HOH HOH . 
G 4 HOH A 18 39 39 HOH HOH . 
G 4 HOH A 19 40 40 HOH HOH . 
G 4 HOH A 20 41 41 HOH HOH . 
G 4 HOH A 21 43 43 HOH HOH . 
G 4 HOH A 22 47 47 HOH HOH . 
G 4 HOH A 23 48 48 HOH HOH . 
G 4 HOH A 24 49 49 HOH HOH . 
G 4 HOH A 25 50 50 HOH HOH . 
G 4 HOH A 26 51 51 HOH HOH . 
G 4 HOH A 27 53 53 HOH HOH . 
G 4 HOH A 28 57 57 HOH HOH . 
G 4 HOH A 29 58 58 HOH HOH . 
G 4 HOH A 30 59 59 HOH HOH . 
G 4 HOH A 31 60 60 HOH HOH . 
G 4 HOH A 32 61 61 HOH HOH . 
G 4 HOH A 33 62 62 HOH HOH . 
G 4 HOH A 34 64 64 HOH HOH . 
G 4 HOH A 35 65 65 HOH HOH . 
G 4 HOH A 36 66 66 HOH HOH . 
G 4 HOH A 37 69 69 HOH HOH . 
G 4 HOH A 38 71 71 HOH HOH . 
G 4 HOH A 39 72 72 HOH HOH . 
G 4 HOH A 40 73 73 HOH HOH . 
G 4 HOH A 41 75 75 HOH HOH . 
G 4 HOH A 42 77 77 HOH HOH . 
G 4 HOH A 43 78 78 HOH HOH . 
G 4 HOH A 44 79 79 HOH HOH . 
G 4 HOH A 45 80 80 HOH HOH . 
G 4 HOH A 46 81 81 HOH HOH . 
G 4 HOH A 47 85 85 HOH HOH . 
G 4 HOH A 48 86 86 HOH HOH . 
G 4 HOH A 49 89 89 HOH HOH . 
G 4 HOH A 50 92 92 HOH HOH . 
G 4 HOH A 51 96 96 HOH HOH . 
G 4 HOH A 52 98 98 HOH HOH . 
G 4 HOH A 53 102 102 HOH HOH . 
G 4 HOH A 54 107 107 HOH HOH . 
G 4 HOH A 55 110 110 HOH HOH . 
G 4 HOH A 56 111 111 HOH HOH . 
G 4 HOH A 57 112 112 HOH HOH . 
G 4 HOH A 58 113 113 HOH HOH . 
H 4 HOH B 1 1 1 HOH HOH . 
H 4 HOH B 2 2 2 HOH HOH . 
H 4 HOH B 3 3 3 HOH HOH . 
H 4 HOH B 4 4 4 HOH HOH . 
H 4 HOH B 5 5 5 HOH HOH . 
H 4 HOH B 6 8 8 HOH HOH . 
H 4 HOH B 7 10 10 HOH HOH . 
H 4 HOH B 8 11 11 HOH HOH . 
H 4 HOH B 9 12 12 HOH HOH . 
H 4 HOH B 10 13 13 HOH HOH . 
H 4 HOH B 11 16 16 HOH HOH . 
H 4 HOH B 12 17 17 HOH HOH . 
H 4 HOH B 13 21 21 HOH HOH . 
H 4 HOH B 14 22 22 HOH HOH . 
H 4 HOH B 15 24 24 HOH HOH . 
H 4 HOH B 16 26 26 HOH HOH . 
H 4 HOH B 17 32 32 HOH HOH . 
H 4 HOH B 18 33 33 HOH HOH . 
H 4 HOH B 19 34 34 HOH HOH . 
H 4 HOH B 20 35 35 HOH HOH . 
H 4 HOH B 21 38 38 HOH HOH . 
H 4 HOH B 22 42 42 HOH HOH . 
H 4 HOH B 23 44 44 HOH HOH . 
H 4 HOH B 24 45 45 HOH HOH . 
H 4 HOH B 25 46 46 HOH HOH . 
H 4 HOH B 26 52 52 HOH HOH . 
H 4 HOH B 27 54 54 HOH HOH . 
H 4 HOH B 28 55 55 HOH HOH . 
H 4 HOH B 29 56 56 HOH HOH . 
H 4 HOH B 30 63 63 HOH HOH . 
H 4 HOH B 31 67 67 HOH HOH . 
H 4 HOH B 32 68 68 HOH HOH . 
H 4 HOH B 33 70 70 HOH HOH . 
H 4 HOH B 34 74 74 HOH HOH . 
H 4 HOH B 35 76 76 HOH HOH . 
H 4 HOH B 36 82 82 HOH HOH . 
H 4 HOH B 37 83 83 HOH HOH . 
H 4 HOH B 38 84 84 HOH HOH . 
H 4 HOH B 39 87 87 HOH HOH . 
H 4 HOH B 40 88 88 HOH HOH . 
H 4 HOH B 41 90 90 HOH HOH . 
H 4 HOH B 42 91 91 HOH HOH . 
H 4 HOH B 43 93 93 HOH HOH . 
H 4 HOH B 44 94 94 HOH HOH . 
H 4 HOH B 45 95 95 HOH HOH . 
H 4 HOH B 46 97 97 HOH HOH . 
H 4 HOH B 47 99 99 HOH HOH . 
H 4 HOH B 48 100 100 HOH HOH . 
H 4 HOH B 49 101 101 HOH HOH . 
H 4 HOH B 50 103 103 HOH HOH . 
H 4 HOH B 51 104 104 HOH HOH . 
H 4 HOH B 52 105 105 HOH HOH . 
H 4 HOH B 53 106 106 HOH HOH . 
H 4 HOH B 54 108 108 HOH HOH . 
H 4 HOH B 55 109 109 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 POP . . . F 3 -35.355 -14.486 -23.542 1 79.39 ? P1 POP 602 B 1 
HETATM 2 O O1 POP . . . F 3 -34.36 -14.863 -24.673 1 68.99 ? O1 POP 602 B 1 
HETATM 3 O O2 POP . . . F 3 -35.782 -13.04 -23.729 1 95.37 ? O2 POP 602 B 1 
HETATM 4 O O3 POP . . . F 3 -34.597 -14.56 -22.208 1 77.11 ? O3 POP 602 B 1 
HETATM 5 O O POP . . . F 3 -36.697 -15.496 -23.508 1 78.56 ? O POP 602 B 1 
HETATM 6 P P2 POP . . . F 3 -36.931 -17.126 -23.291 1 55.67 ? P2 POP 602 B 1 
HETATM 7 O O4 POP . . . F 3 -36.75 -17.372 -21.856 1 65.42 ? O4 POP 602 B 1 
HETATM 8 O O5 POP . . . F 3 -38.407 -17.54 -23.349 1 86.46 ? O5 POP 602 B 1 
HETATM 9 O O6 POP . . . F 3 -36.074 -18.011 -24.268 1 76.3 ? O6 POP 602 B 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           470 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           9 
#