data_2D5H # _model_server_result.job_id rZgIs0tzbbBm9Cnk53Wj2g _model_server_result.datetime_utc '2024-10-10 14:25:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2d5h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":502}' # _entry.id 2D5H # _exptl.entry_id 2D5H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.009 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CARBONATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.85 _cell.angle_gamma 90 _cell.entry_id 2D5H _cell.length_a 89.378 _cell.length_b 223.738 _cell.length_c 88.66 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D5H _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L 1 1 D,E,F,M,N,O,P,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 42 A CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 85 A CYS 85 1_555 A SG CYS 327 A CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 9 B CYS 9 1_555 B SG CYS 42 B CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 85 B CYS 85 1_555 B SG CYS 327 B CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 C SG CYS 9 C CYS 9 1_555 C SG CYS 42 C CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 C SG CYS 85 C CYS 85 1_555 C SG CYS 327 C CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 D SG CYS 9 D CYS 9 1_555 D SG CYS 42 D CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 D SG CYS 85 D CYS 85 1_555 D SG CYS 327 D CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 E SG CYS 9 E CYS 9 1_555 E SG CYS 42 E CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 E SG CYS 85 E CYS 85 1_555 E SG CYS 327 E CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf11 F SG CYS 9 F CYS 9 1_555 F SG CYS 42 F CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf12 F SG CYS 85 F CYS 85 1_555 F SG CYS 327 F CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A C ASN 405 A ASN 405 1_555 A N CSD 406 A CSD 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C CSD 406 A CSD 406 1_555 A N GLN 407 A GLN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C ASN 405 B ASN 405 1_555 B N CSD 406 B CSD 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C CSD 406 B CSD 406 1_555 B N GLN 407 B GLN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 C C ASN 405 C ASN 405 1_555 C N CSD 406 C CSD 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 C C CSD 406 C CSD 406 1_555 C N GLN 407 C GLN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 D C ASN 405 D ASN 405 1_555 D N CSD 406 D CSD 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 D C CSD 406 D CSD 406 1_555 D N GLN 407 D GLN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 E C ASN 405 E ASN 405 1_555 E N CSD 406 E CSD 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 E C CSD 406 E CSD 406 1_555 E N GLN 407 E GLN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 F C ASN 405 F ASN 405 1_555 F N CSD 406 F CSD 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 F C CSD 406 F CSD 406 1_555 F N GLN 407 F GLN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 D OE1 GLU 432 D GLU 432 1_555 N MG MG . D MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc2 F OH TYR 441 F TYR 441 1_555 R MG MG . F MG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc3 A OE1 GLU 432 A GLU 432 1_555 H MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? metalc ? metalc4 E OE1 GLU 432 E GLU 432 1_555 P MG MG . E MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc5 C OE1 GLU 432 C GLU 432 1_555 L MG MG . C MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? # _chem_comp.formula 'C O3 -2' _chem_comp.formula_weight 60.009 _chem_comp.id CO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'CARBONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2D5H _atom_sites.fract_transf_matrix[1][1] 0.011188 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006422 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00447 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CO3 A 1 501 501 CO3 CO3 . H 3 MG A 1 601 601 MG MG . I 2 CO3 B 1 502 502 CO3 CO3 . J 3 MG B 1 602 602 MG MG . K 2 CO3 C 1 503 503 CO3 CO3 . L 3 MG C 1 603 603 MG MG . M 2 CO3 D 1 504 504 CO3 CO3 . N 3 MG D 1 604 604 MG MG . O 2 CO3 E 1 505 505 CO3 CO3 . P 3 MG E 1 605 605 MG MG . Q 2 CO3 F 1 506 506 CO3 CO3 . R 3 MG F 1 606 606 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CO3 . . . I 2 69.061 117.189 -33.732 1 39.89 ? C CO3 502 B 1 HETATM 2 O O1 CO3 . . . I 2 69.534 117.133 -34.934 1 12.38 ? O1 CO3 502 B 1 HETATM 3 O O2 CO3 . . . I 2 68.058 116.451 -33.419 1 45.56 ? O2 CO3 502 B 1 HETATM 4 O O3 CO3 . . . I 2 69.599 117.983 -32.858 1 22.75 ? O3 CO3 502 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #