data_2D5I # _model_server_result.job_id ObNxyiTnCyE_4m9FQYQauA _model_server_result.datetime_utc '2024-11-25 09:23:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2d5i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 2D5I # _exptl.entry_id 2D5I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2D5I _cell.length_a 94.63 _cell.length_b 94.63 _cell.length_c 54.12 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D5I _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 94.63 94.63 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 70 n n N1 C10 FMN doub 71 n n C2 O2 FMN doub 72 n n C2 N3 FMN sing 73 n n N3 C4 FMN sing 74 n n N3 HN3 FMN sing 75 n n C4 O4 FMN doub 76 n n C4 C4A FMN sing 77 n n C4A N5 FMN doub 78 n n C4A C10 FMN sing 79 n n N5 C5A FMN sing 80 n n C5A C6 FMN doub 81 n y C5A C9A FMN sing 82 n y C6 C7 FMN sing 83 n y C6 H6 FMN sing 84 n n C7 C7M FMN sing 85 n n C7 C8 FMN doub 86 n y C7M HM71 FMN sing 87 n n C7M HM72 FMN sing 88 n n C7M HM73 FMN sing 89 n n C8 C8M FMN sing 90 n n C8 C9 FMN sing 91 n y C8M HM81 FMN sing 92 n n C8M HM82 FMN sing 93 n n C8M HM83 FMN sing 94 n n C9 C9A FMN doub 95 n y C9 H9 FMN sing 96 n n C9A N10 FMN sing 97 n n N10 C10 FMN sing 98 n n N10 C1' FMN sing 99 n n C1' C2' FMN sing 100 n n C1' "H1'1" FMN sing 101 n n C1' "H1'2" FMN sing 102 n n C2' O2' FMN sing 103 n n C2' C3' FMN sing 104 n n C2' H2' FMN sing 105 n n O2' HO2' FMN sing 106 n n C3' O3' FMN sing 107 n n C3' C4' FMN sing 108 n n C3' H3' FMN sing 109 n n O3' HO3' FMN sing 110 n n C4' O4' FMN sing 111 n n C4' C5' FMN sing 112 n n C4' H4' FMN sing 113 n n O4' HO4' FMN sing 114 n n C5' O5' FMN sing 115 n n C5' "H5'1" FMN sing 116 n n C5' "H5'2" FMN sing 117 n n O5' P FMN sing 118 n n P O1P FMN doub 119 n n P O2P FMN sing 120 n n P O3P FMN sing 121 n n O2P HOP2 FMN sing 122 n n O3P HOP3 FMN sing 123 n n # _atom_sites.entry_id 2D5I _atom_sites.fract_transf_matrix[1][1] 0.010568 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018477 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 201 201 FMN FMN . C 3 GOL A 1 202 202 GOL GOL . D 3 GOL A 1 203 203 GOL GOL . E 4 HOH A 1 204 1 HOH HOH . E 4 HOH A 2 205 2 HOH HOH . E 4 HOH A 3 206 3 HOH HOH . E 4 HOH A 4 207 4 HOH HOH . E 4 HOH A 5 208 5 HOH HOH . E 4 HOH A 6 209 6 HOH HOH . E 4 HOH A 7 210 7 HOH HOH . E 4 HOH A 8 211 8 HOH HOH . E 4 HOH A 9 212 9 HOH HOH . E 4 HOH A 10 213 10 HOH HOH . E 4 HOH A 11 214 11 HOH HOH . E 4 HOH A 12 215 12 HOH HOH . E 4 HOH A 13 216 13 HOH HOH . E 4 HOH A 14 217 14 HOH HOH . E 4 HOH A 15 218 15 HOH HOH . E 4 HOH A 16 219 16 HOH HOH . E 4 HOH A 17 220 17 HOH HOH . E 4 HOH A 18 221 18 HOH HOH . E 4 HOH A 19 222 19 HOH HOH . E 4 HOH A 20 223 20 HOH HOH . E 4 HOH A 21 224 21 HOH HOH . E 4 HOH A 22 225 22 HOH HOH . E 4 HOH A 23 226 23 HOH HOH . E 4 HOH A 24 227 24 HOH HOH . E 4 HOH A 25 228 25 HOH HOH . E 4 HOH A 26 229 26 HOH HOH . E 4 HOH A 27 230 27 HOH HOH . E 4 HOH A 28 231 28 HOH HOH . E 4 HOH A 29 232 29 HOH HOH . E 4 HOH A 30 233 30 HOH HOH . E 4 HOH A 31 234 31 HOH HOH . E 4 HOH A 32 235 32 HOH HOH . E 4 HOH A 33 236 33 HOH HOH . E 4 HOH A 34 237 34 HOH HOH . E 4 HOH A 35 238 35 HOH HOH . E 4 HOH A 36 239 36 HOH HOH . E 4 HOH A 37 240 37 HOH HOH . E 4 HOH A 38 241 38 HOH HOH . E 4 HOH A 39 242 39 HOH HOH . E 4 HOH A 40 243 40 HOH HOH . E 4 HOH A 41 244 41 HOH HOH . E 4 HOH A 42 245 42 HOH HOH . E 4 HOH A 43 246 43 HOH HOH . E 4 HOH A 44 247 44 HOH HOH . E 4 HOH A 45 248 45 HOH HOH . E 4 HOH A 46 249 46 HOH HOH . E 4 HOH A 47 250 47 HOH HOH . E 4 HOH A 48 251 48 HOH HOH . E 4 HOH A 49 252 49 HOH HOH . E 4 HOH A 50 253 50 HOH HOH . E 4 HOH A 51 254 51 HOH HOH . E 4 HOH A 52 255 52 HOH HOH . E 4 HOH A 53 256 53 HOH HOH . E 4 HOH A 54 257 54 HOH HOH . E 4 HOH A 55 258 55 HOH HOH . E 4 HOH A 56 259 56 HOH HOH . E 4 HOH A 57 260 57 HOH HOH . E 4 HOH A 58 261 58 HOH HOH . E 4 HOH A 59 262 59 HOH HOH . E 4 HOH A 60 263 60 HOH HOH . E 4 HOH A 61 264 61 HOH HOH . E 4 HOH A 62 265 62 HOH HOH . E 4 HOH A 63 266 63 HOH HOH . E 4 HOH A 64 267 64 HOH HOH . E 4 HOH A 65 268 65 HOH HOH . E 4 HOH A 66 269 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 70.431 6.693 -6.369 1 19.19 ? N1 FMN 201 A 1 HETATM 2 C C2 FMN . . . B 2 71.78 6.367 -6.373 1 17.45 ? C2 FMN 201 A 1 HETATM 3 O O2 FMN . . . B 2 72.21 5.23 -6.164 1 16.48 ? O2 FMN 201 A 1 HETATM 4 N N3 FMN . . . B 2 72.698 7.329 -6.586 1 18.92 ? N3 FMN 201 A 1 HETATM 5 C C4 FMN . . . B 2 72.392 8.626 -6.801 1 20.68 ? C4 FMN 201 A 1 HETATM 6 O O4 FMN . . . B 2 73.334 9.423 -6.794 1 18.85 ? O4 FMN 201 A 1 HETATM 7 C C4A FMN . . . B 2 71.06 8.994 -6.789 1 18.47 ? C4A FMN 201 A 1 HETATM 8 N N5 FMN . . . B 2 70.727 10.26 -7.067 1 13.28 ? N5 FMN 201 A 1 HETATM 9 C C5A FMN . . . B 2 69.385 10.591 -6.967 1 16.01 ? C5A FMN 201 A 1 HETATM 10 C C6 FMN . . . B 2 68.987 11.933 -7.143 1 15.5 ? C6 FMN 201 A 1 HETATM 11 C C7 FMN . . . B 2 67.629 12.345 -6.99 1 18.05 ? C7 FMN 201 A 1 HETATM 12 C C7M FMN . . . B 2 67.305 13.873 -7.045 1 17.28 ? C7M FMN 201 A 1 HETATM 13 C C8 FMN . . . B 2 66.655 11.379 -6.719 1 19.24 ? C8 FMN 201 A 1 HETATM 14 C C8M FMN . . . B 2 65.203 11.74 -6.579 1 21.88 ? C8M FMN 201 A 1 HETATM 15 C C9 FMN . . . B 2 67.022 10.045 -6.536 1 20.11 ? C9 FMN 201 A 1 HETATM 16 C C9A FMN . . . B 2 68.377 9.642 -6.641 1 16.38 ? C9A FMN 201 A 1 HETATM 17 N N10 FMN . . . B 2 68.746 8.35 -6.457 1 18.23 ? N10 FMN 201 A 1 HETATM 18 C C10 FMN . . . B 2 70.085 8.02 -6.561 1 19.71 ? C10 FMN 201 A 1 HETATM 19 C C1' FMN . . . B 2 67.868 7.265 -5.982 1 13.52 ? C1' FMN 201 A 1 HETATM 20 C C2' FMN . . . B 2 67.69 7.366 -4.458 1 18.45 ? C2' FMN 201 A 1 HETATM 21 O O2' FMN . . . B 2 68.874 7.227 -3.68 1 15.42 ? O2' FMN 201 A 1 HETATM 22 C C3' FMN . . . B 2 66.569 6.351 -4.077 1 21.19 ? C3' FMN 201 A 1 HETATM 23 O O3' FMN . . . B 2 65.369 6.733 -4.736 1 18.26 ? O3' FMN 201 A 1 HETATM 24 C C4' FMN . . . B 2 66.379 6.323 -2.576 1 21.34 ? C4' FMN 201 A 1 HETATM 25 O O4' FMN . . . B 2 65.346 5.43 -2.202 1 19.24 ? O4' FMN 201 A 1 HETATM 26 C C5' FMN . . . B 2 66.072 7.722 -2.058 1 20.81 ? C5' FMN 201 A 1 HETATM 27 O O5' FMN . . . B 2 65.83 7.627 -0.67 1 22.59 ? O5' FMN 201 A 1 HETATM 28 P P FMN . . . B 2 64.361 8.037 -0.273 1 22.44 ? P FMN 201 A 1 HETATM 29 O O1P FMN . . . B 2 64.261 8.008 1.231 1 17.03 ? O1P FMN 201 A 1 HETATM 30 O O2P FMN . . . B 2 64.14 9.459 -0.728 1 18.18 ? O2P FMN 201 A 1 HETATM 31 O O3P FMN . . . B 2 63.279 7.216 -1.016 1 20.71 ? O3P FMN 201 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #