data_2D5I
#
_model_server_result.job_id            Us-Cu24whgxTqmZbA5Fj2w 
_model_server_result.datetime_utc      '2024-11-25 09:55:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2d5i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    2D5I 
#
_exptl.entry_id    2D5I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2D5I 
_cell.length_a            94.63 
_cell.length_b            94.63 
_cell.length_c            54.12 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2D5I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        90 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 4 21 2' 
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_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 94.63 94.63 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 170 n n 
C1 C2 GOL sing 171 n n 
C1 H11 GOL sing 172 n n 
C1 H12 GOL sing 173 n n 
O1 HO1 GOL sing 174 n n 
C2 O2 GOL sing 175 n n 
C2 C3 GOL sing 176 n n 
C2 H2 GOL sing 177 n n 
O2 HO2 GOL sing 178 n n 
C3 O3 GOL sing 179 n n 
C3 H31 GOL sing 180 n n 
C3 H32 GOL sing 181 n n 
O3 HO3 GOL sing 182 n n 
#
_atom_sites.entry_id                     2D5I 
_atom_sites.fract_transf_matrix[1][1]    0.010568 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010568 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018477 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FMN A 1 201 201 FMN FMN . 
C 3 GOL A 1 202 202 GOL GOL . 
D 3 GOL A 1 203 203 GOL GOL . 
E 4 HOH A 1 204 1 HOH HOH . 
E 4 HOH A 2 205 2 HOH HOH . 
E 4 HOH A 3 206 3 HOH HOH . 
E 4 HOH A 4 207 4 HOH HOH . 
E 4 HOH A 5 208 5 HOH HOH . 
E 4 HOH A 6 209 6 HOH HOH . 
E 4 HOH A 7 210 7 HOH HOH . 
E 4 HOH A 8 211 8 HOH HOH . 
E 4 HOH A 9 212 9 HOH HOH . 
E 4 HOH A 10 213 10 HOH HOH . 
E 4 HOH A 11 214 11 HOH HOH . 
E 4 HOH A 12 215 12 HOH HOH . 
E 4 HOH A 13 216 13 HOH HOH . 
E 4 HOH A 14 217 14 HOH HOH . 
E 4 HOH A 15 218 15 HOH HOH . 
E 4 HOH A 16 219 16 HOH HOH . 
E 4 HOH A 17 220 17 HOH HOH . 
E 4 HOH A 18 221 18 HOH HOH . 
E 4 HOH A 19 222 19 HOH HOH . 
E 4 HOH A 20 223 20 HOH HOH . 
E 4 HOH A 21 224 21 HOH HOH . 
E 4 HOH A 22 225 22 HOH HOH . 
E 4 HOH A 23 226 23 HOH HOH . 
E 4 HOH A 24 227 24 HOH HOH . 
E 4 HOH A 25 228 25 HOH HOH . 
E 4 HOH A 26 229 26 HOH HOH . 
E 4 HOH A 27 230 27 HOH HOH . 
E 4 HOH A 28 231 28 HOH HOH . 
E 4 HOH A 29 232 29 HOH HOH . 
E 4 HOH A 30 233 30 HOH HOH . 
E 4 HOH A 31 234 31 HOH HOH . 
E 4 HOH A 32 235 32 HOH HOH . 
E 4 HOH A 33 236 33 HOH HOH . 
E 4 HOH A 34 237 34 HOH HOH . 
E 4 HOH A 35 238 35 HOH HOH . 
E 4 HOH A 36 239 36 HOH HOH . 
E 4 HOH A 37 240 37 HOH HOH . 
E 4 HOH A 38 241 38 HOH HOH . 
E 4 HOH A 39 242 39 HOH HOH . 
E 4 HOH A 40 243 40 HOH HOH . 
E 4 HOH A 41 244 41 HOH HOH . 
E 4 HOH A 42 245 42 HOH HOH . 
E 4 HOH A 43 246 43 HOH HOH . 
E 4 HOH A 44 247 44 HOH HOH . 
E 4 HOH A 45 248 45 HOH HOH . 
E 4 HOH A 46 249 46 HOH HOH . 
E 4 HOH A 47 250 47 HOH HOH . 
E 4 HOH A 48 251 48 HOH HOH . 
E 4 HOH A 49 252 49 HOH HOH . 
E 4 HOH A 50 253 50 HOH HOH . 
E 4 HOH A 51 254 51 HOH HOH . 
E 4 HOH A 52 255 52 HOH HOH . 
E 4 HOH A 53 256 53 HOH HOH . 
E 4 HOH A 54 257 54 HOH HOH . 
E 4 HOH A 55 258 55 HOH HOH . 
E 4 HOH A 56 259 56 HOH HOH . 
E 4 HOH A 57 260 57 HOH HOH . 
E 4 HOH A 58 261 58 HOH HOH . 
E 4 HOH A 59 262 59 HOH HOH . 
E 4 HOH A 60 263 60 HOH HOH . 
E 4 HOH A 61 264 61 HOH HOH . 
E 4 HOH A 62 265 62 HOH HOH . 
E 4 HOH A 63 266 63 HOH HOH . 
E 4 HOH A 64 267 64 HOH HOH . 
E 4 HOH A 65 268 65 HOH HOH . 
E 4 HOH A 66 269 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 79.446 13.814 -0.509 0.5 26.3 ? C1 GOL 202 A 1 
HETATM 2 O O1 GOL . . . C 3 79.254 12.539 -1.098 0.5 29.43 ? O1 GOL 202 A 1 
HETATM 3 C C2 GOL . . . C 3 80.909 14.239 -0.583 0.5 25.92 ? C2 GOL 202 A 1 
HETATM 4 O O2 GOL . . . C 3 81.808 13.167 -0.715 0.5 26.08 ? O2 GOL 202 A 1 
HETATM 5 C C3 GOL . . . C 3 81.324 15.142 0.579 0.5 27.01 ? C3 GOL 202 A 1 
HETATM 6 O O3 GOL . . . C 3 82.52 15.841 0.216 0.5 26.79 ? O3 GOL 202 A 1 
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_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          27 
_model_server_stats.element_count           6 
#