data_2D5X # _model_server_result.job_id 6LiQQ2UU46CdaxXvfguNzg _model_server_result.datetime_utc '2025-02-26 19:43:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2d5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1143}' # _entry.id 2D5X # _exptl.entry_id 2D5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 28.01 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CARBON MONOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2D5X _cell.length_a 62.337 _cell.length_b 107.442 _cell.length_c 87.016 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 107.442 87.016 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc2 C FE HEM . A HEM 142 1_555 D C CMO . A CMO 1143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.7 ? metalc ? metalc3 C FE HEM . A HEM 142 1_555 D O CMO . A CMO 1143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 F FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc5 F FE HEM . B HEM 147 1_555 G C CMO . B CMO 1148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.683 ? metalc ? metalc6 F FE HEM . B HEM 147 1_555 G O CMO . B CMO 1148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? # _chem_comp.formula 'C O' _chem_comp.formula_weight 28.01 _chem_comp.id CMO _chem_comp.mon_nstd_flag . _chem_comp.name 'CARBON MONOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 C _chem_comp_bond.atom_id_2 O _chem_comp_bond.comp_id CMO _chem_comp_bond.value_order trip _chem_comp_bond.pdbx_ordinal 70 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 2D5X _atom_sites.fract_transf_matrix[1][1] 0.016042 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009307 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 142 142 HEM HEM . D 4 CMO A 1 1143 143 CMO CO . E 5 L35 A 1 1200 200 L35 L35 . F 3 HEM B 1 147 147 HEM HEM . G 4 CMO B 1 1148 148 CMO CO . H 5 L35 B 1 1201 201 L35 L35 . I 6 HOH A 1 1201 1 HOH HOH . I 6 HOH A 2 1202 2 HOH HOH . I 6 HOH A 3 1203 5 HOH HOH . I 6 HOH A 4 1204 6 HOH HOH . I 6 HOH A 5 1205 8 HOH HOH . I 6 HOH A 6 1206 10 HOH HOH . I 6 HOH A 7 1207 11 HOH HOH . I 6 HOH A 8 1208 12 HOH HOH . I 6 HOH A 9 1209 13 HOH HOH . I 6 HOH A 10 1210 15 HOH HOH . I 6 HOH A 11 1211 17 HOH HOH . I 6 HOH A 12 1212 18 HOH HOH . I 6 HOH A 13 1213 19 HOH HOH . I 6 HOH A 14 1214 20 HOH HOH . I 6 HOH A 15 1215 21 HOH HOH . I 6 HOH A 16 1216 22 HOH HOH . I 6 HOH A 17 1217 23 HOH HOH . I 6 HOH A 18 1218 27 HOH HOH . I 6 HOH A 19 1219 29 HOH HOH . I 6 HOH A 20 1220 31 HOH HOH . I 6 HOH A 21 1221 34 HOH HOH . I 6 HOH A 22 1222 36 HOH HOH . I 6 HOH A 23 1223 38 HOH HOH . I 6 HOH A 24 1224 41 HOH HOH . I 6 HOH A 25 1225 42 HOH HOH . I 6 HOH A 26 1226 43 HOH HOH . I 6 HOH A 27 1227 46 HOH HOH . I 6 HOH A 28 1228 48 HOH HOH . I 6 HOH A 29 1229 50 HOH HOH . I 6 HOH A 30 1230 51 HOH HOH . I 6 HOH A 31 1231 52 HOH HOH . I 6 HOH A 32 1232 53 HOH HOH . I 6 HOH A 33 1233 58 HOH HOH . I 6 HOH A 34 1234 60 HOH HOH . I 6 HOH A 35 1235 64 HOH HOH . I 6 HOH A 36 1236 65 HOH HOH . I 6 HOH A 37 1237 66 HOH HOH . I 6 HOH A 38 1238 67 HOH HOH . I 6 HOH A 39 1239 69 HOH HOH . I 6 HOH A 40 1240 70 HOH HOH . I 6 HOH A 41 1241 71 HOH HOH . I 6 HOH A 42 1242 73 HOH HOH . I 6 HOH A 43 1243 74 HOH HOH . I 6 HOH A 44 1244 75 HOH HOH . I 6 HOH A 45 1245 77 HOH HOH . I 6 HOH A 46 1246 78 HOH HOH . I 6 HOH A 47 1247 80 HOH HOH . I 6 HOH A 48 1248 83 HOH HOH . I 6 HOH A 49 1249 86 HOH HOH . I 6 HOH A 50 1250 89 HOH HOH . I 6 HOH A 51 1251 90 HOH HOH . I 6 HOH A 52 1252 93 HOH HOH . I 6 HOH A 53 1253 94 HOH HOH . I 6 HOH A 54 1254 96 HOH HOH . I 6 HOH A 55 1255 98 HOH HOH . I 6 HOH A 56 1256 99 HOH HOH . I 6 HOH A 57 1257 102 HOH HOH . I 6 HOH A 58 1258 104 HOH HOH . I 6 HOH A 59 1259 105 HOH HOH . I 6 HOH A 60 1260 108 HOH HOH . I 6 HOH A 61 1261 111 HOH HOH . I 6 HOH A 62 1262 112 HOH HOH . I 6 HOH A 63 1263 113 HOH HOH . I 6 HOH A 64 1264 115 HOH HOH . I 6 HOH A 65 1265 116 HOH HOH . I 6 HOH A 66 1266 119 HOH HOH . I 6 HOH A 67 1267 124 HOH HOH . I 6 HOH A 68 1268 127 HOH HOH . I 6 HOH A 69 1269 128 HOH HOH . I 6 HOH A 70 1270 129 HOH HOH . I 6 HOH A 71 1271 130 HOH HOH . I 6 HOH A 72 1272 132 HOH HOH . I 6 HOH A 73 1273 134 HOH HOH . I 6 HOH A 74 1274 136 HOH HOH . I 6 HOH A 75 1275 137 HOH HOH . I 6 HOH A 76 1276 138 HOH HOH . I 6 HOH A 77 1277 139 HOH HOH . I 6 HOH A 78 1278 140 HOH HOH . I 6 HOH A 79 1279 141 HOH HOH . I 6 HOH A 80 1280 145 HOH HOH . I 6 HOH A 81 1281 147 HOH HOH . I 6 HOH A 82 1282 149 HOH HOH . I 6 HOH A 83 1283 151 HOH HOH . I 6 HOH A 84 1284 152 HOH HOH . I 6 HOH A 85 1285 153 HOH HOH . I 6 HOH A 86 1286 154 HOH HOH . I 6 HOH A 87 1287 155 HOH HOH . I 6 HOH A 88 1288 157 HOH HOH . I 6 HOH A 89 1289 158 HOH HOH . I 6 HOH A 90 1290 161 HOH HOH . I 6 HOH A 91 1291 162 HOH HOH . I 6 HOH A 92 1292 168 HOH HOH . I 6 HOH A 93 1293 170 HOH HOH . I 6 HOH A 94 1294 171 HOH HOH . I 6 HOH A 95 1295 173 HOH HOH . I 6 HOH A 96 1296 175 HOH HOH . I 6 HOH A 97 1297 177 HOH HOH . I 6 HOH A 98 1298 179 HOH HOH . I 6 HOH A 99 1299 181 HOH HOH . I 6 HOH A 100 1300 182 HOH HOH . I 6 HOH A 101 1301 183 HOH HOH . I 6 HOH A 102 1302 184 HOH HOH . I 6 HOH A 103 1303 190 HOH HOH . I 6 HOH A 104 1304 193 HOH HOH . I 6 HOH A 105 1305 194 HOH HOH . I 6 HOH A 106 1306 196 HOH HOH . I 6 HOH A 107 1307 197 HOH HOH . I 6 HOH A 108 1308 201 HOH HOH . I 6 HOH A 109 1309 202 HOH HOH . I 6 HOH A 110 1310 204 HOH HOH . I 6 HOH A 111 1311 205 HOH HOH . I 6 HOH A 112 1312 209 HOH HOH . I 6 HOH A 113 1313 211 HOH HOH . I 6 HOH A 114 1314 213 HOH HOH . I 6 HOH A 115 1315 214 HOH HOH . I 6 HOH A 116 1316 216 HOH HOH . I 6 HOH A 117 1317 219 HOH HOH . I 6 HOH A 118 1318 221 HOH HOH . I 6 HOH A 119 1319 224 HOH HOH . J 6 HOH B 1 1202 3 HOH HOH . J 6 HOH B 2 1203 4 HOH HOH . J 6 HOH B 3 1204 7 HOH HOH . J 6 HOH B 4 1205 9 HOH HOH . J 6 HOH B 5 1206 14 HOH HOH . J 6 HOH B 6 1207 16 HOH HOH . J 6 HOH B 7 1208 24 HOH HOH . J 6 HOH B 8 1209 25 HOH HOH . J 6 HOH B 9 1210 26 HOH HOH . J 6 HOH B 10 1211 28 HOH HOH . J 6 HOH B 11 1212 30 HOH HOH . J 6 HOH B 12 1213 32 HOH HOH . J 6 HOH B 13 1214 33 HOH HOH . J 6 HOH B 14 1215 35 HOH HOH . J 6 HOH B 15 1216 37 HOH HOH . J 6 HOH B 16 1217 39 HOH HOH . J 6 HOH B 17 1218 40 HOH HOH . J 6 HOH B 18 1219 44 HOH HOH . J 6 HOH B 19 1220 45 HOH HOH . J 6 HOH B 20 1221 47 HOH HOH . J 6 HOH B 21 1222 49 HOH HOH . J 6 HOH B 22 1223 54 HOH HOH . J 6 HOH B 23 1224 55 HOH HOH . J 6 HOH B 24 1225 56 HOH HOH . J 6 HOH B 25 1226 57 HOH HOH . J 6 HOH B 26 1227 59 HOH HOH . J 6 HOH B 27 1228 61 HOH HOH . J 6 HOH B 28 1229 62 HOH HOH . J 6 HOH B 29 1230 63 HOH HOH . J 6 HOH B 30 1231 68 HOH HOH . J 6 HOH B 31 1232 72 HOH HOH . J 6 HOH B 32 1233 76 HOH HOH . J 6 HOH B 33 1234 79 HOH HOH . J 6 HOH B 34 1235 81 HOH HOH . J 6 HOH B 35 1236 82 HOH HOH . J 6 HOH B 36 1237 84 HOH HOH . J 6 HOH B 37 1238 85 HOH HOH . J 6 HOH B 38 1239 87 HOH HOH . J 6 HOH B 39 1240 88 HOH HOH . J 6 HOH B 40 1241 91 HOH HOH . J 6 HOH B 41 1242 92 HOH HOH . J 6 HOH B 42 1243 95 HOH HOH . J 6 HOH B 43 1244 97 HOH HOH . J 6 HOH B 44 1245 100 HOH HOH . J 6 HOH B 45 1246 101 HOH HOH . J 6 HOH B 46 1247 103 HOH HOH . J 6 HOH B 47 1248 106 HOH HOH . J 6 HOH B 48 1249 107 HOH HOH . J 6 HOH B 49 1250 109 HOH HOH . J 6 HOH B 50 1251 110 HOH HOH . J 6 HOH B 51 1252 114 HOH HOH . J 6 HOH B 52 1253 117 HOH HOH . J 6 HOH B 53 1254 118 HOH HOH . J 6 HOH B 54 1255 120 HOH HOH . J 6 HOH B 55 1256 121 HOH HOH . J 6 HOH B 56 1257 122 HOH HOH . J 6 HOH B 57 1258 123 HOH HOH . J 6 HOH B 58 1259 125 HOH HOH . J 6 HOH B 59 1260 126 HOH HOH . J 6 HOH B 60 1261 131 HOH HOH . J 6 HOH B 61 1262 133 HOH HOH . J 6 HOH B 62 1263 135 HOH HOH . J 6 HOH B 63 1264 142 HOH HOH . J 6 HOH B 64 1265 143 HOH HOH . J 6 HOH B 65 1266 144 HOH HOH . J 6 HOH B 66 1267 146 HOH HOH . J 6 HOH B 67 1268 148 HOH HOH . J 6 HOH B 68 1269 150 HOH HOH . J 6 HOH B 69 1270 156 HOH HOH . J 6 HOH B 70 1271 159 HOH HOH . J 6 HOH B 71 1272 160 HOH HOH . J 6 HOH B 72 1273 163 HOH HOH . J 6 HOH B 73 1274 164 HOH HOH . J 6 HOH B 74 1275 165 HOH HOH . J 6 HOH B 75 1276 166 HOH HOH . J 6 HOH B 76 1277 167 HOH HOH . J 6 HOH B 77 1278 169 HOH HOH . J 6 HOH B 78 1279 172 HOH HOH . J 6 HOH B 79 1280 174 HOH HOH . J 6 HOH B 80 1281 176 HOH HOH . J 6 HOH B 81 1282 178 HOH HOH . J 6 HOH B 82 1283 180 HOH HOH . J 6 HOH B 83 1284 185 HOH HOH . J 6 HOH B 84 1285 186 HOH HOH . J 6 HOH B 85 1286 187 HOH HOH . J 6 HOH B 86 1287 188 HOH HOH . J 6 HOH B 87 1288 189 HOH HOH . J 6 HOH B 88 1289 191 HOH HOH . J 6 HOH B 89 1290 192 HOH HOH . J 6 HOH B 90 1291 195 HOH HOH . J 6 HOH B 91 1292 198 HOH HOH . J 6 HOH B 92 1293 199 HOH HOH . J 6 HOH B 93 1294 200 HOH HOH . J 6 HOH B 94 1295 203 HOH HOH . J 6 HOH B 95 1296 206 HOH HOH . J 6 HOH B 96 1297 207 HOH HOH . J 6 HOH B 97 1298 208 HOH HOH . J 6 HOH B 98 1299 210 HOH HOH . J 6 HOH B 99 1300 212 HOH HOH . J 6 HOH B 100 1301 215 HOH HOH . J 6 HOH B 101 1302 217 HOH HOH . J 6 HOH B 102 1303 218 HOH HOH . J 6 HOH B 103 1304 220 HOH HOH . J 6 HOH B 104 1305 222 HOH HOH . J 6 HOH B 105 1306 223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CMO . . . D 4 20.999 46.819 26.317 1 12.53 ? C CMO 1143 A 1 HETATM 2 O O CMO . . . D 4 20.265 45.876 26.096 1 14.19 ? O CMO 1143 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 2 #