data_2D5Y # _model_server_result.job_id Yhyx6LgbtbdWsDX2adUc2w _model_server_result.datetime_utc '2025-03-06 10:17:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2d5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":414}' # _entry.id 2D5Y # _exptl.entry_id 2D5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.132 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ISOVALERIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2D5Y _cell.length_a 157.234 _cell.length_b 85.152 _cell.length_c 78.731 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 246 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 258 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 413 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.369 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C5 H10 O2' _chem_comp.formula_weight 102.132 _chem_comp.id IVA _chem_comp.mon_nstd_flag . _chem_comp.name 'ISOVALERIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2D5Y _atom_sites.fract_transf_matrix[1][1] 0.00636 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012701 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 413 413 PLP PLP . C 3 IVA A 1 414 414 IVA IVA . D 4 HOH A 1 415 1 HOH HOH . D 4 HOH A 2 416 2 HOH HOH . D 4 HOH A 3 417 3 HOH HOH . D 4 HOH A 4 418 4 HOH HOH . D 4 HOH A 5 419 5 HOH HOH . D 4 HOH A 6 420 6 HOH HOH . D 4 HOH A 7 421 7 HOH HOH . D 4 HOH A 8 422 8 HOH HOH . D 4 HOH A 9 423 9 HOH HOH . D 4 HOH A 10 424 10 HOH HOH . D 4 HOH A 11 425 11 HOH HOH . D 4 HOH A 12 426 12 HOH HOH . D 4 HOH A 13 427 13 HOH HOH . D 4 HOH A 14 428 14 HOH HOH . D 4 HOH A 15 429 15 HOH HOH . D 4 HOH A 16 430 16 HOH HOH . D 4 HOH A 17 431 17 HOH HOH . D 4 HOH A 18 432 18 HOH HOH . D 4 HOH A 19 433 19 HOH HOH . D 4 HOH A 20 434 20 HOH HOH . D 4 HOH A 21 435 21 HOH HOH . D 4 HOH A 22 436 23 HOH HOH . D 4 HOH A 23 437 24 HOH HOH . D 4 HOH A 24 438 25 HOH HOH . D 4 HOH A 25 439 26 HOH HOH . D 4 HOH A 26 440 27 HOH HOH . D 4 HOH A 27 441 28 HOH HOH . D 4 HOH A 28 442 29 HOH HOH . D 4 HOH A 29 443 30 HOH HOH . D 4 HOH A 30 444 31 HOH HOH . D 4 HOH A 31 445 32 HOH HOH . D 4 HOH A 32 446 33 HOH HOH . D 4 HOH A 33 447 34 HOH HOH . D 4 HOH A 34 448 35 HOH HOH . D 4 HOH A 35 449 36 HOH HOH . D 4 HOH A 36 450 37 HOH HOH . D 4 HOH A 37 451 38 HOH HOH . D 4 HOH A 38 452 39 HOH HOH . D 4 HOH A 39 453 40 HOH HOH . D 4 HOH A 40 454 42 HOH HOH . D 4 HOH A 41 455 43 HOH HOH . D 4 HOH A 42 456 44 HOH HOH . D 4 HOH A 43 457 45 HOH HOH . D 4 HOH A 44 458 46 HOH HOH . D 4 HOH A 45 459 47 HOH HOH . D 4 HOH A 46 460 48 HOH HOH . D 4 HOH A 47 461 49 HOH HOH . D 4 HOH A 48 462 50 HOH HOH . D 4 HOH A 49 463 51 HOH HOH . D 4 HOH A 50 464 52 HOH HOH . D 4 HOH A 51 465 53 HOH HOH . D 4 HOH A 52 466 54 HOH HOH . D 4 HOH A 53 467 55 HOH HOH . D 4 HOH A 54 468 56 HOH HOH . D 4 HOH A 55 469 57 HOH HOH . D 4 HOH A 56 470 58 HOH HOH . D 4 HOH A 57 471 59 HOH HOH . D 4 HOH A 58 472 60 HOH HOH . D 4 HOH A 59 473 61 HOH HOH . D 4 HOH A 60 474 62 HOH HOH . D 4 HOH A 61 475 63 HOH HOH . D 4 HOH A 62 476 64 HOH HOH . D 4 HOH A 63 477 65 HOH HOH . D 4 HOH A 64 478 66 HOH HOH . D 4 HOH A 65 479 67 HOH HOH . D 4 HOH A 66 480 68 HOH HOH . D 4 HOH A 67 481 69 HOH HOH . D 4 HOH A 68 482 70 HOH HOH . D 4 HOH A 69 483 71 HOH HOH . D 4 HOH A 70 484 72 HOH HOH . D 4 HOH A 71 485 73 HOH HOH . D 4 HOH A 72 486 74 HOH HOH . D 4 HOH A 73 487 75 HOH HOH . D 4 HOH A 74 488 76 HOH HOH . D 4 HOH A 75 489 77 HOH HOH . D 4 HOH A 76 490 78 HOH HOH . D 4 HOH A 77 491 79 HOH HOH . D 4 HOH A 78 492 80 HOH HOH . D 4 HOH A 79 493 81 HOH HOH . D 4 HOH A 80 494 82 HOH HOH . D 4 HOH A 81 495 84 HOH HOH . D 4 HOH A 82 496 85 HOH HOH . D 4 HOH A 83 497 86 HOH HOH . D 4 HOH A 84 498 87 HOH HOH . D 4 HOH A 85 499 88 HOH HOH . D 4 HOH A 86 500 89 HOH HOH . D 4 HOH A 87 501 90 HOH HOH . D 4 HOH A 88 502 91 HOH HOH . D 4 HOH A 89 503 92 HOH HOH . D 4 HOH A 90 504 93 HOH HOH . D 4 HOH A 91 505 94 HOH HOH . D 4 HOH A 92 506 95 HOH HOH . D 4 HOH A 93 507 96 HOH HOH . D 4 HOH A 94 508 97 HOH HOH . D 4 HOH A 95 509 98 HOH HOH . D 4 HOH A 96 510 99 HOH HOH . D 4 HOH A 97 511 100 HOH HOH . D 4 HOH A 98 512 101 HOH HOH . D 4 HOH A 99 513 102 HOH HOH . D 4 HOH A 100 514 103 HOH HOH . D 4 HOH A 101 515 106 HOH HOH . D 4 HOH A 102 516 107 HOH HOH . D 4 HOH A 103 517 108 HOH HOH . D 4 HOH A 104 518 109 HOH HOH . D 4 HOH A 105 519 110 HOH HOH . D 4 HOH A 106 520 111 HOH HOH . D 4 HOH A 107 521 112 HOH HOH . D 4 HOH A 108 522 113 HOH HOH . D 4 HOH A 109 523 114 HOH HOH . D 4 HOH A 110 524 115 HOH HOH . D 4 HOH A 111 525 116 HOH HOH . D 4 HOH A 112 526 117 HOH HOH . D 4 HOH A 113 527 118 HOH HOH . D 4 HOH A 114 528 120 HOH HOH . D 4 HOH A 115 529 122 HOH HOH . D 4 HOH A 116 530 123 HOH HOH . D 4 HOH A 117 531 124 HOH HOH . D 4 HOH A 118 532 125 HOH HOH . D 4 HOH A 119 533 126 HOH HOH . D 4 HOH A 120 534 127 HOH HOH . D 4 HOH A 121 535 128 HOH HOH . D 4 HOH A 122 536 129 HOH HOH . D 4 HOH A 123 537 130 HOH HOH . D 4 HOH A 124 538 131 HOH HOH . D 4 HOH A 125 539 132 HOH HOH . D 4 HOH A 126 540 133 HOH HOH . D 4 HOH A 127 541 134 HOH HOH . D 4 HOH A 128 542 135 HOH HOH . D 4 HOH A 129 543 137 HOH HOH . D 4 HOH A 130 544 138 HOH HOH . D 4 HOH A 131 545 139 HOH HOH . D 4 HOH A 132 546 140 HOH HOH . D 4 HOH A 133 547 142 HOH HOH . D 4 HOH A 134 548 143 HOH HOH . D 4 HOH A 135 549 144 HOH HOH . D 4 HOH A 136 550 145 HOH HOH . D 4 HOH A 137 551 146 HOH HOH . D 4 HOH A 138 552 147 HOH HOH . D 4 HOH A 139 553 148 HOH HOH . D 4 HOH A 140 554 150 HOH HOH . D 4 HOH A 141 555 152 HOH HOH . D 4 HOH A 142 556 153 HOH HOH . D 4 HOH A 143 557 154 HOH HOH . D 4 HOH A 144 558 155 HOH HOH . D 4 HOH A 145 559 156 HOH HOH . D 4 HOH A 146 560 157 HOH HOH . D 4 HOH A 147 561 158 HOH HOH . D 4 HOH A 148 562 159 HOH HOH . D 4 HOH A 149 563 160 HOH HOH . D 4 HOH A 150 564 161 HOH HOH . D 4 HOH A 151 565 162 HOH HOH . D 4 HOH A 152 566 163 HOH HOH . D 4 HOH A 153 567 165 HOH HOH . D 4 HOH A 154 568 166 HOH HOH . D 4 HOH A 155 569 167 HOH HOH . D 4 HOH A 156 570 168 HOH HOH . D 4 HOH A 157 571 171 HOH HOH . D 4 HOH A 158 572 172 HOH HOH . D 4 HOH A 159 573 173 HOH HOH . D 4 HOH A 160 574 174 HOH HOH . D 4 HOH A 161 575 175 HOH HOH . D 4 HOH A 162 576 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA IVA . . . C 3 23.912 10.144 -13.447 1 24.61 ? CA IVA 414 A 1 HETATM 2 C CB IVA . . . C 3 23.953 10.426 -11.943 1 27.65 ? CB IVA 414 A 1 HETATM 3 C CG1 IVA . . . C 3 23.483 9.196 -11.162 1 28.26 ? CG1 IVA 414 A 1 HETATM 4 C CG2 IVA . . . C 3 25.357 10.826 -11.481 1 28.48 ? CG2 IVA 414 A 1 HETATM 5 C C IVA . . . C 3 24.349 11.349 -14.282 1 23.43 ? C IVA 414 A 1 HETATM 6 O O IVA . . . C 3 25.419 11.235 -14.919 1 21.34 ? O IVA 414 A 1 HETATM 7 O OXT IVA . . . C 3 23.607 12.356 -14.268 1 20.33 ? OXT IVA 414 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #