data_2D64 # _model_server_result.job_id iqhhlcZ-jOZe1ulx06dLvw _model_server_result.datetime_utc '2024-11-28 18:55:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2d64 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":413}' # _entry.id 2D64 # _exptl.entry_id 2D64 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2D64 _cell.length_a 156.712 _cell.length_b 84.862 _cell.length_c 78.514 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D64 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 246 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 258 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 413 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.368 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 2D64 _atom_sites.fract_transf_matrix[1][1] 0.006381 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 413 413 PLP PLP . C 3 IVA A 1 414 414 IVA IVA . D 4 HOH A 1 415 1 HOH HOH . D 4 HOH A 2 416 2 HOH HOH . D 4 HOH A 3 417 3 HOH HOH . D 4 HOH A 4 418 4 HOH HOH . D 4 HOH A 5 419 5 HOH HOH . D 4 HOH A 6 420 6 HOH HOH . D 4 HOH A 7 421 7 HOH HOH . D 4 HOH A 8 422 8 HOH HOH . D 4 HOH A 9 423 9 HOH HOH . D 4 HOH A 10 424 10 HOH HOH . D 4 HOH A 11 425 11 HOH HOH . D 4 HOH A 12 426 12 HOH HOH . D 4 HOH A 13 427 13 HOH HOH . D 4 HOH A 14 428 14 HOH HOH . D 4 HOH A 15 429 15 HOH HOH . D 4 HOH A 16 430 16 HOH HOH . D 4 HOH A 17 431 17 HOH HOH . D 4 HOH A 18 432 18 HOH HOH . D 4 HOH A 19 433 19 HOH HOH . D 4 HOH A 20 434 20 HOH HOH . D 4 HOH A 21 435 21 HOH HOH . D 4 HOH A 22 436 22 HOH HOH . D 4 HOH A 23 437 23 HOH HOH . D 4 HOH A 24 438 24 HOH HOH . D 4 HOH A 25 439 25 HOH HOH . D 4 HOH A 26 440 26 HOH HOH . D 4 HOH A 27 441 27 HOH HOH . D 4 HOH A 28 442 28 HOH HOH . D 4 HOH A 29 443 29 HOH HOH . D 4 HOH A 30 444 30 HOH HOH . D 4 HOH A 31 445 31 HOH HOH . D 4 HOH A 32 446 32 HOH HOH . D 4 HOH A 33 447 33 HOH HOH . D 4 HOH A 34 448 34 HOH HOH . D 4 HOH A 35 449 35 HOH HOH . D 4 HOH A 36 450 36 HOH HOH . D 4 HOH A 37 451 37 HOH HOH . D 4 HOH A 38 452 38 HOH HOH . D 4 HOH A 39 453 39 HOH HOH . D 4 HOH A 40 454 40 HOH HOH . D 4 HOH A 41 455 41 HOH HOH . D 4 HOH A 42 456 42 HOH HOH . D 4 HOH A 43 457 43 HOH HOH . D 4 HOH A 44 458 44 HOH HOH . D 4 HOH A 45 459 45 HOH HOH . D 4 HOH A 46 460 46 HOH HOH . D 4 HOH A 47 461 47 HOH HOH . D 4 HOH A 48 462 48 HOH HOH . D 4 HOH A 49 463 49 HOH HOH . D 4 HOH A 50 464 50 HOH HOH . D 4 HOH A 51 465 51 HOH HOH . D 4 HOH A 52 466 52 HOH HOH . D 4 HOH A 53 467 53 HOH HOH . D 4 HOH A 54 468 54 HOH HOH . D 4 HOH A 55 469 55 HOH HOH . D 4 HOH A 56 470 56 HOH HOH . D 4 HOH A 57 471 57 HOH HOH . D 4 HOH A 58 472 58 HOH HOH . D 4 HOH A 59 473 59 HOH HOH . D 4 HOH A 60 474 60 HOH HOH . D 4 HOH A 61 475 61 HOH HOH . D 4 HOH A 62 476 62 HOH HOH . D 4 HOH A 63 477 63 HOH HOH . D 4 HOH A 64 478 64 HOH HOH . D 4 HOH A 65 479 65 HOH HOH . D 4 HOH A 66 480 66 HOH HOH . D 4 HOH A 67 481 67 HOH HOH . D 4 HOH A 68 482 68 HOH HOH . D 4 HOH A 69 483 69 HOH HOH . D 4 HOH A 70 484 70 HOH HOH . D 4 HOH A 71 485 71 HOH HOH . D 4 HOH A 72 486 72 HOH HOH . D 4 HOH A 73 487 73 HOH HOH . D 4 HOH A 74 488 74 HOH HOH . D 4 HOH A 75 489 75 HOH HOH . D 4 HOH A 76 490 76 HOH HOH . D 4 HOH A 77 491 77 HOH HOH . D 4 HOH A 78 492 78 HOH HOH . D 4 HOH A 79 493 79 HOH HOH . D 4 HOH A 80 494 80 HOH HOH . D 4 HOH A 81 495 81 HOH HOH . D 4 HOH A 82 496 82 HOH HOH . D 4 HOH A 83 497 83 HOH HOH . D 4 HOH A 84 498 84 HOH HOH . D 4 HOH A 85 499 85 HOH HOH . D 4 HOH A 86 500 86 HOH HOH . D 4 HOH A 87 501 87 HOH HOH . D 4 HOH A 88 502 88 HOH HOH . D 4 HOH A 89 503 89 HOH HOH . D 4 HOH A 90 504 90 HOH HOH . D 4 HOH A 91 505 91 HOH HOH . D 4 HOH A 92 506 92 HOH HOH . D 4 HOH A 93 507 93 HOH HOH . D 4 HOH A 94 508 94 HOH HOH . D 4 HOH A 95 509 95 HOH HOH . D 4 HOH A 96 510 96 HOH HOH . D 4 HOH A 97 511 97 HOH HOH . D 4 HOH A 98 512 98 HOH HOH . D 4 HOH A 99 513 99 HOH HOH . D 4 HOH A 100 514 100 HOH HOH . D 4 HOH A 101 515 101 HOH HOH . D 4 HOH A 102 516 102 HOH HOH . D 4 HOH A 103 517 103 HOH HOH . D 4 HOH A 104 518 104 HOH HOH . D 4 HOH A 105 519 105 HOH HOH . D 4 HOH A 106 520 106 HOH HOH . D 4 HOH A 107 521 107 HOH HOH . D 4 HOH A 108 522 108 HOH HOH . D 4 HOH A 109 523 109 HOH HOH . D 4 HOH A 110 524 110 HOH HOH . D 4 HOH A 111 525 111 HOH HOH . D 4 HOH A 112 526 112 HOH HOH . D 4 HOH A 113 527 113 HOH HOH . D 4 HOH A 114 528 114 HOH HOH . D 4 HOH A 115 529 115 HOH HOH . D 4 HOH A 116 530 116 HOH HOH . D 4 HOH A 117 531 117 HOH HOH . D 4 HOH A 118 532 118 HOH HOH . D 4 HOH A 119 533 119 HOH HOH . D 4 HOH A 120 534 120 HOH HOH . D 4 HOH A 121 535 121 HOH HOH . D 4 HOH A 122 536 122 HOH HOH . D 4 HOH A 123 537 123 HOH HOH . D 4 HOH A 124 538 124 HOH HOH . D 4 HOH A 125 539 125 HOH HOH . D 4 HOH A 126 540 126 HOH HOH . D 4 HOH A 127 541 127 HOH HOH . D 4 HOH A 128 542 128 HOH HOH . D 4 HOH A 129 543 129 HOH HOH . D 4 HOH A 130 544 130 HOH HOH . D 4 HOH A 131 545 131 HOH HOH . D 4 HOH A 132 546 133 HOH HOH . D 4 HOH A 133 547 134 HOH HOH . D 4 HOH A 134 548 135 HOH HOH . D 4 HOH A 135 549 136 HOH HOH . D 4 HOH A 136 550 137 HOH HOH . D 4 HOH A 137 551 138 HOH HOH . D 4 HOH A 138 552 139 HOH HOH . D 4 HOH A 139 553 140 HOH HOH . D 4 HOH A 140 554 141 HOH HOH . D 4 HOH A 141 555 142 HOH HOH . D 4 HOH A 142 556 143 HOH HOH . D 4 HOH A 143 557 144 HOH HOH . D 4 HOH A 144 558 145 HOH HOH . D 4 HOH A 145 559 147 HOH HOH . D 4 HOH A 146 560 148 HOH HOH . D 4 HOH A 147 561 149 HOH HOH . D 4 HOH A 148 562 150 HOH HOH . D 4 HOH A 149 563 151 HOH HOH . D 4 HOH A 150 564 152 HOH HOH . D 4 HOH A 151 565 153 HOH HOH . D 4 HOH A 152 566 154 HOH HOH . D 4 HOH A 153 567 155 HOH HOH . D 4 HOH A 154 568 156 HOH HOH . D 4 HOH A 155 569 157 HOH HOH . D 4 HOH A 156 570 158 HOH HOH . D 4 HOH A 157 571 159 HOH HOH . D 4 HOH A 158 572 161 HOH HOH . D 4 HOH A 159 573 162 HOH HOH . D 4 HOH A 160 574 163 HOH HOH . D 4 HOH A 161 575 164 HOH HOH . D 4 HOH A 162 576 165 HOH HOH . D 4 HOH A 163 577 166 HOH HOH . D 4 HOH A 164 578 167 HOH HOH . D 4 HOH A 165 579 168 HOH HOH . D 4 HOH A 166 580 169 HOH HOH . D 4 HOH A 167 581 170 HOH HOH . D 4 HOH A 168 582 171 HOH HOH . D 4 HOH A 169 583 172 HOH HOH . D 4 HOH A 170 584 173 HOH HOH . D 4 HOH A 171 585 174 HOH HOH . D 4 HOH A 172 586 175 HOH HOH . D 4 HOH A 173 587 176 HOH HOH . D 4 HOH A 174 588 177 HOH HOH . D 4 HOH A 175 589 178 HOH HOH . D 4 HOH A 176 590 179 HOH HOH . D 4 HOH A 177 591 180 HOH HOH . D 4 HOH A 178 592 181 HOH HOH . D 4 HOH A 179 593 182 HOH HOH . D 4 HOH A 180 594 183 HOH HOH . D 4 HOH A 181 595 184 HOH HOH . D 4 HOH A 182 596 185 HOH HOH . D 4 HOH A 183 597 186 HOH HOH . D 4 HOH A 184 598 187 HOH HOH . D 4 HOH A 185 599 189 HOH HOH . D 4 HOH A 186 600 190 HOH HOH . D 4 HOH A 187 601 192 HOH HOH . D 4 HOH A 188 602 194 HOH HOH . D 4 HOH A 189 603 195 HOH HOH . D 4 HOH A 190 604 197 HOH HOH . D 4 HOH A 191 605 198 HOH HOH . D 4 HOH A 192 606 199 HOH HOH . D 4 HOH A 193 607 202 HOH HOH . D 4 HOH A 194 608 203 HOH HOH . D 4 HOH A 195 609 204 HOH HOH . D 4 HOH A 196 610 205 HOH HOH . D 4 HOH A 197 611 206 HOH HOH . D 4 HOH A 198 612 208 HOH HOH . D 4 HOH A 199 613 209 HOH HOH . D 4 HOH A 200 614 210 HOH HOH . D 4 HOH A 201 615 211 HOH HOH . D 4 HOH A 202 616 212 HOH HOH . D 4 HOH A 203 617 213 HOH HOH . D 4 HOH A 204 618 214 HOH HOH . D 4 HOH A 205 619 215 HOH HOH . D 4 HOH A 206 620 216 HOH HOH . D 4 HOH A 207 621 217 HOH HOH . D 4 HOH A 208 622 218 HOH HOH . D 4 HOH A 209 623 219 HOH HOH . D 4 HOH A 210 624 220 HOH HOH . D 4 HOH A 211 625 221 HOH HOH . D 4 HOH A 212 626 222 HOH HOH . D 4 HOH A 213 627 223 HOH HOH . D 4 HOH A 214 628 224 HOH HOH . D 4 HOH A 215 629 225 HOH HOH . D 4 HOH A 216 630 226 HOH HOH . D 4 HOH A 217 631 227 HOH HOH . D 4 HOH A 218 632 229 HOH HOH . D 4 HOH A 219 633 230 HOH HOH . D 4 HOH A 220 634 231 HOH HOH . D 4 HOH A 221 635 232 HOH HOH . D 4 HOH A 222 636 234 HOH HOH . D 4 HOH A 223 637 235 HOH HOH . D 4 HOH A 224 638 237 HOH HOH . D 4 HOH A 225 639 238 HOH HOH . D 4 HOH A 226 640 239 HOH HOH . D 4 HOH A 227 641 240 HOH HOH . D 4 HOH A 228 642 241 HOH HOH . D 4 HOH A 229 643 242 HOH HOH . D 4 HOH A 230 644 243 HOH HOH . D 4 HOH A 231 645 244 HOH HOH . D 4 HOH A 232 646 247 HOH HOH . D 4 HOH A 233 647 251 HOH HOH . D 4 HOH A 234 648 253 HOH HOH . D 4 HOH A 235 649 254 HOH HOH . D 4 HOH A 236 650 255 HOH HOH . D 4 HOH A 237 651 261 HOH HOH . D 4 HOH A 238 652 262 HOH HOH . D 4 HOH A 239 653 264 HOH HOH . D 4 HOH A 240 654 265 HOH HOH . D 4 HOH A 241 655 268 HOH HOH . D 4 HOH A 242 656 269 HOH HOH . D 4 HOH A 243 657 296 HOH HOH . D 4 HOH A 244 658 302 HOH HOH . D 4 HOH A 245 659 303 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 26.84 4.751 -14.932 1 20.06 ? N1 PLP 413 A 1 HETATM 2 C C2 PLP . . . B 2 26.297 5.734 -15.724 1 19.07 ? C2 PLP 413 A 1 HETATM 3 C C2A PLP . . . B 2 27.157 6.157 -16.912 1 19.54 ? C2A PLP 413 A 1 HETATM 4 C C3 PLP . . . B 2 25.047 6.242 -15.386 1 19.89 ? C3 PLP 413 A 1 HETATM 5 O O3 PLP . . . B 2 24.571 7.208 -16.216 1 17.45 ? O3 PLP 413 A 1 HETATM 6 C C4 PLP . . . B 2 24.313 5.793 -14.266 1 21.76 ? C4 PLP 413 A 1 HETATM 7 C C4A PLP . . . B 2 22.904 6.364 -13.907 1 21.95 ? C4A PLP 413 A 1 HETATM 8 C C5 PLP . . . B 2 24.899 4.765 -13.447 1 22.39 ? C5 PLP 413 A 1 HETATM 9 C C6 PLP . . . B 2 26.146 4.3 -13.84 1 20.45 ? C6 PLP 413 A 1 HETATM 10 C C5A PLP . . . B 2 24.316 4.116 -12.194 1 20.99 ? C5A PLP 413 A 1 HETATM 11 O O4P PLP . . . B 2 23.463 4.898 -11.384 1 20.11 ? O4P PLP 413 A 1 HETATM 12 P P PLP . . . B 2 22.896 4.345 -10.055 1 18.74 ? P PLP 413 A 1 HETATM 13 O O1P PLP . . . B 2 22.054 5.472 -9.588 1 21.16 ? O1P PLP 413 A 1 HETATM 14 O O2P PLP . . . B 2 24.052 4.11 -9.138 1 17.92 ? O2P PLP 413 A 1 HETATM 15 O O3P PLP . . . B 2 22.137 3.136 -10.314 1 20.36 ? O3P PLP 413 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #