data_2D66 # _model_server_result.job_id WzlUA2bG9mGv1MYFeoJanA _model_server_result.datetime_utc '2024-11-07 14:35:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2d66 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":413}' # _entry.id 2D66 # _exptl.entry_id 2D66 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2D66 _cell.length_a 157.484 _cell.length_b 85.218 _cell.length_c 78.612 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D66 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 246 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 258 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 413 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.377 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 2D66 _atom_sites.fract_transf_matrix[1][1] 0.00635 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011735 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 414 414 SO4 SO4 . C 3 PLP A 1 413 413 PLP PLP . D 4 HOH A 1 415 1 HOH HOH . D 4 HOH A 2 416 2 HOH HOH . D 4 HOH A 3 417 3 HOH HOH . D 4 HOH A 4 418 4 HOH HOH . D 4 HOH A 5 419 5 HOH HOH . D 4 HOH A 6 420 6 HOH HOH . D 4 HOH A 7 421 7 HOH HOH . D 4 HOH A 8 422 8 HOH HOH . D 4 HOH A 9 423 9 HOH HOH . D 4 HOH A 10 424 10 HOH HOH . D 4 HOH A 11 425 11 HOH HOH . D 4 HOH A 12 426 12 HOH HOH . D 4 HOH A 13 427 13 HOH HOH . D 4 HOH A 14 428 14 HOH HOH . D 4 HOH A 15 429 15 HOH HOH . D 4 HOH A 16 430 16 HOH HOH . D 4 HOH A 17 431 17 HOH HOH . D 4 HOH A 18 432 18 HOH HOH . D 4 HOH A 19 433 19 HOH HOH . D 4 HOH A 20 434 20 HOH HOH . D 4 HOH A 21 435 21 HOH HOH . D 4 HOH A 22 436 22 HOH HOH . D 4 HOH A 23 437 23 HOH HOH . D 4 HOH A 24 438 24 HOH HOH . D 4 HOH A 25 439 25 HOH HOH . D 4 HOH A 26 440 26 HOH HOH . D 4 HOH A 27 441 27 HOH HOH . D 4 HOH A 28 442 28 HOH HOH . D 4 HOH A 29 443 29 HOH HOH . D 4 HOH A 30 444 30 HOH HOH . D 4 HOH A 31 445 31 HOH HOH . D 4 HOH A 32 446 32 HOH HOH . D 4 HOH A 33 447 33 HOH HOH . D 4 HOH A 34 448 35 HOH HOH . D 4 HOH A 35 449 36 HOH HOH . D 4 HOH A 36 450 37 HOH HOH . D 4 HOH A 37 451 38 HOH HOH . D 4 HOH A 38 452 39 HOH HOH . D 4 HOH A 39 453 40 HOH HOH . D 4 HOH A 40 454 41 HOH HOH . D 4 HOH A 41 455 42 HOH HOH . D 4 HOH A 42 456 43 HOH HOH . D 4 HOH A 43 457 44 HOH HOH . D 4 HOH A 44 458 45 HOH HOH . D 4 HOH A 45 459 46 HOH HOH . D 4 HOH A 46 460 47 HOH HOH . D 4 HOH A 47 461 48 HOH HOH . D 4 HOH A 48 462 49 HOH HOH . D 4 HOH A 49 463 50 HOH HOH . D 4 HOH A 50 464 51 HOH HOH . D 4 HOH A 51 465 52 HOH HOH . D 4 HOH A 52 466 53 HOH HOH . D 4 HOH A 53 467 54 HOH HOH . D 4 HOH A 54 468 55 HOH HOH . D 4 HOH A 55 469 56 HOH HOH . D 4 HOH A 56 470 57 HOH HOH . D 4 HOH A 57 471 59 HOH HOH . D 4 HOH A 58 472 60 HOH HOH . D 4 HOH A 59 473 61 HOH HOH . D 4 HOH A 60 474 62 HOH HOH . D 4 HOH A 61 475 63 HOH HOH . D 4 HOH A 62 476 64 HOH HOH . D 4 HOH A 63 477 65 HOH HOH . D 4 HOH A 64 478 66 HOH HOH . D 4 HOH A 65 479 67 HOH HOH . D 4 HOH A 66 480 68 HOH HOH . D 4 HOH A 67 481 69 HOH HOH . D 4 HOH A 68 482 70 HOH HOH . D 4 HOH A 69 483 71 HOH HOH . D 4 HOH A 70 484 72 HOH HOH . D 4 HOH A 71 485 73 HOH HOH . D 4 HOH A 72 486 74 HOH HOH . D 4 HOH A 73 487 75 HOH HOH . D 4 HOH A 74 488 76 HOH HOH . D 4 HOH A 75 489 77 HOH HOH . D 4 HOH A 76 490 78 HOH HOH . D 4 HOH A 77 491 79 HOH HOH . D 4 HOH A 78 492 80 HOH HOH . D 4 HOH A 79 493 81 HOH HOH . D 4 HOH A 80 494 82 HOH HOH . D 4 HOH A 81 495 83 HOH HOH . D 4 HOH A 82 496 84 HOH HOH . D 4 HOH A 83 497 85 HOH HOH . D 4 HOH A 84 498 86 HOH HOH . D 4 HOH A 85 499 88 HOH HOH . D 4 HOH A 86 500 90 HOH HOH . D 4 HOH A 87 501 91 HOH HOH . D 4 HOH A 88 502 92 HOH HOH . D 4 HOH A 89 503 93 HOH HOH . D 4 HOH A 90 504 95 HOH HOH . D 4 HOH A 91 505 96 HOH HOH . D 4 HOH A 92 506 97 HOH HOH . D 4 HOH A 93 507 98 HOH HOH . D 4 HOH A 94 508 99 HOH HOH . D 4 HOH A 95 509 101 HOH HOH . D 4 HOH A 96 510 103 HOH HOH . D 4 HOH A 97 511 104 HOH HOH . D 4 HOH A 98 512 105 HOH HOH . D 4 HOH A 99 513 106 HOH HOH . D 4 HOH A 100 514 107 HOH HOH . D 4 HOH A 101 515 108 HOH HOH . D 4 HOH A 102 516 109 HOH HOH . D 4 HOH A 103 517 110 HOH HOH . D 4 HOH A 104 518 111 HOH HOH . D 4 HOH A 105 519 113 HOH HOH . D 4 HOH A 106 520 114 HOH HOH . D 4 HOH A 107 521 116 HOH HOH . D 4 HOH A 108 522 117 HOH HOH . D 4 HOH A 109 523 118 HOH HOH . D 4 HOH A 110 524 120 HOH HOH . D 4 HOH A 111 525 121 HOH HOH . D 4 HOH A 112 526 122 HOH HOH . D 4 HOH A 113 527 124 HOH HOH . D 4 HOH A 114 528 125 HOH HOH . D 4 HOH A 115 529 127 HOH HOH . D 4 HOH A 116 530 128 HOH HOH . D 4 HOH A 117 531 129 HOH HOH . D 4 HOH A 118 532 132 HOH HOH . D 4 HOH A 119 533 134 HOH HOH . D 4 HOH A 120 534 136 HOH HOH . D 4 HOH A 121 535 137 HOH HOH . D 4 HOH A 122 536 138 HOH HOH . D 4 HOH A 123 537 139 HOH HOH . D 4 HOH A 124 538 140 HOH HOH . D 4 HOH A 125 539 143 HOH HOH . D 4 HOH A 126 540 145 HOH HOH . D 4 HOH A 127 541 146 HOH HOH . D 4 HOH A 128 542 149 HOH HOH . D 4 HOH A 129 543 150 HOH HOH . D 4 HOH A 130 544 154 HOH HOH . D 4 HOH A 131 545 161 HOH HOH . D 4 HOH A 132 546 163 HOH HOH . D 4 HOH A 133 547 166 HOH HOH . D 4 HOH A 134 548 167 HOH HOH . D 4 HOH A 135 549 171 HOH HOH . D 4 HOH A 136 550 178 HOH HOH . D 4 HOH A 137 551 187 HOH HOH . D 4 HOH A 138 552 190 HOH HOH . D 4 HOH A 139 553 191 HOH HOH . D 4 HOH A 140 554 199 HOH HOH . D 4 HOH A 141 555 202 HOH HOH . D 4 HOH A 142 556 203 HOH HOH . D 4 HOH A 143 557 207 HOH HOH . D 4 HOH A 144 558 218 HOH HOH . D 4 HOH A 145 559 220 HOH HOH . D 4 HOH A 146 560 221 HOH HOH . D 4 HOH A 147 561 231 HOH HOH . D 4 HOH A 148 562 235 HOH HOH . D 4 HOH A 149 563 236 HOH HOH . D 4 HOH A 150 564 237 HOH HOH . D 4 HOH A 151 565 238 HOH HOH . D 4 HOH A 152 566 239 HOH HOH . D 4 HOH A 153 567 241 HOH HOH . D 4 HOH A 154 568 242 HOH HOH . D 4 HOH A 155 569 243 HOH HOH . D 4 HOH A 156 570 244 HOH HOH . D 4 HOH A 157 571 245 HOH HOH . D 4 HOH A 158 572 246 HOH HOH . D 4 HOH A 159 573 248 HOH HOH . D 4 HOH A 160 574 249 HOH HOH . D 4 HOH A 161 575 250 HOH HOH . D 4 HOH A 162 576 251 HOH HOH . D 4 HOH A 163 577 252 HOH HOH . D 4 HOH A 164 578 253 HOH HOH . D 4 HOH A 165 579 254 HOH HOH . D 4 HOH A 166 580 255 HOH HOH . D 4 HOH A 167 581 257 HOH HOH . D 4 HOH A 168 582 258 HOH HOH . D 4 HOH A 169 583 260 HOH HOH . D 4 HOH A 170 584 262 HOH HOH . D 4 HOH A 171 585 264 HOH HOH . D 4 HOH A 172 586 266 HOH HOH . D 4 HOH A 173 587 267 HOH HOH . D 4 HOH A 174 588 268 HOH HOH . D 4 HOH A 175 589 269 HOH HOH . D 4 HOH A 176 590 270 HOH HOH . D 4 HOH A 177 591 271 HOH HOH . D 4 HOH A 178 592 272 HOH HOH . D 4 HOH A 179 593 273 HOH HOH . D 4 HOH A 180 594 274 HOH HOH . D 4 HOH A 181 595 277 HOH HOH . D 4 HOH A 182 596 278 HOH HOH . D 4 HOH A 183 597 283 HOH HOH . D 4 HOH A 184 598 285 HOH HOH . D 4 HOH A 185 599 286 HOH HOH . D 4 HOH A 186 600 287 HOH HOH . D 4 HOH A 187 601 290 HOH HOH . D 4 HOH A 188 602 291 HOH HOH . D 4 HOH A 189 603 294 HOH HOH . D 4 HOH A 190 604 299 HOH HOH . D 4 HOH A 191 605 300 HOH HOH . D 4 HOH A 192 606 301 HOH HOH . D 4 HOH A 193 607 302 HOH HOH . D 4 HOH A 194 608 303 HOH HOH . D 4 HOH A 195 609 305 HOH HOH . D 4 HOH A 196 610 308 HOH HOH . D 4 HOH A 197 611 309 HOH HOH . D 4 HOH A 198 612 311 HOH HOH . D 4 HOH A 199 613 313 HOH HOH . D 4 HOH A 200 614 315 HOH HOH . D 4 HOH A 201 615 319 HOH HOH . D 4 HOH A 202 616 320 HOH HOH . D 4 HOH A 203 617 321 HOH HOH . D 4 HOH A 204 618 322 HOH HOH . D 4 HOH A 205 619 323 HOH HOH . D 4 HOH A 206 620 324 HOH HOH . D 4 HOH A 207 621 327 HOH HOH . D 4 HOH A 208 622 328 HOH HOH . D 4 HOH A 209 623 336 HOH HOH . D 4 HOH A 210 624 338 HOH HOH . D 4 HOH A 211 625 339 HOH HOH . D 4 HOH A 212 626 341 HOH HOH . D 4 HOH A 213 627 342 HOH HOH . D 4 HOH A 214 628 343 HOH HOH . D 4 HOH A 215 629 345 HOH HOH . D 4 HOH A 216 630 348 HOH HOH . D 4 HOH A 217 631 358 HOH HOH . D 4 HOH A 218 632 364 HOH HOH . D 4 HOH A 219 633 366 HOH HOH . D 4 HOH A 220 634 380 HOH HOH . D 4 HOH A 221 635 382 HOH HOH . D 4 HOH A 222 636 384 HOH HOH . D 4 HOH A 223 637 387 HOH HOH . D 4 HOH A 224 638 388 HOH HOH . D 4 HOH A 225 639 391 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . C 3 26.853 4.516 -14.998 1 20.51 ? N1 PLP 413 A 1 HETATM 2 C C2 PLP . . . C 3 26.41 5.58 -15.76 1 21.85 ? C2 PLP 413 A 1 HETATM 3 C C2A PLP . . . C 3 27.282 5.934 -16.97 1 21.7 ? C2A PLP 413 A 1 HETATM 4 C C3 PLP . . . C 3 25.239 6.222 -15.373 1 22.45 ? C3 PLP 413 A 1 HETATM 5 O O3 PLP . . . C 3 24.845 7.264 -16.163 1 25.09 ? O3 PLP 413 A 1 HETATM 6 C C4 PLP . . . C 3 24.488 5.847 -14.253 1 25.02 ? C4 PLP 413 A 1 HETATM 7 C C4A PLP . . . C 3 23.181 6.618 -13.891 1 27.77 ? C4A PLP 413 A 1 HETATM 8 C C5 PLP . . . C 3 24.954 4.736 -13.463 1 23.56 ? C5 PLP 413 A 1 HETATM 9 C C6 PLP . . . C 3 26.131 4.129 -13.895 1 21.46 ? C6 PLP 413 A 1 HETATM 10 C C5A PLP . . . C 3 24.319 4.132 -12.214 1 24.85 ? C5A PLP 413 A 1 HETATM 11 O O4P PLP . . . C 3 23.485 4.946 -11.44 1 20.97 ? O4P PLP 413 A 1 HETATM 12 P P PLP . . . C 3 22.893 4.456 -10.105 1 21.25 ? P PLP 413 A 1 HETATM 13 O O1P PLP . . . C 3 22.095 5.646 -9.689 1 21.32 ? O1P PLP 413 A 1 HETATM 14 O O2P PLP . . . C 3 24.034 4.196 -9.188 1 18.03 ? O2P PLP 413 A 1 HETATM 15 O O3P PLP . . . C 3 22.059 3.274 -10.333 1 19.94 ? O3P PLP 413 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 15 #