data_2D6O
#
_model_server_result.job_id            M7Q8gVh_l2TrNXUjoV-Vcg 
_model_server_result.datetime_utc      '2024-10-15 11:28:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2d6o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":205}' 
#
_entry.id    2D6O 
#
_exptl.entry_id    2D6O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2D6O 
_cell.length_a            57.796 
_cell.length_b            94.422 
_cell.length_c            56.544 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2D6O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 57.796 0 28.272 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 GAL NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 NAG GAL C1 O1 . O3 HO3 . sing 
3 ? 2 4 3 GAL NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 A 1 NAG A 4 NAG 
2 n B GAL 2 A 2 GAL A 3 GAL 
2 n B NAG 3 A 3 NAG A 2 NAG 
2 n B GAL 4 A 4 GAL A 1 GAL 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 140 X CYS 138 1_555 A SG CYS 140 X CYS 138 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
covale ? covale1 B O4 NAG . A NAG 1 1_555 B C1 GAL . A GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? 
covale ? covale2 B O3 GAL . A GAL 2 1_555 B C1 NAG . A NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? 
covale ? covale3 B O4 NAG . A NAG 3 1_555 B C1 GAL . A GAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 153 n n 
C1 C2 GOL sing 154 n n 
C1 H11 GOL sing 155 n n 
C1 H12 GOL sing 156 n n 
O1 HO1 GOL sing 157 n n 
C2 O2 GOL sing 158 n n 
C2 C3 GOL sing 159 n n 
C2 H2 GOL sing 160 n n 
O2 HO2 GOL sing 161 n n 
C3 O3 GOL sing 162 n n 
C3 H31 GOL sing 163 n n 
C3 H32 GOL sing 164 n n 
O3 HO3 GOL sing 165 n n 
#
_atom_sites.entry_id                     2D6O 
_atom_sites.fract_transf_matrix[1][1]    0.017302 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010591 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017685 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL X 1 205 301 GOL GOL . 
D 4 HOH X 1 301 43 HOH HOH . 
D 4 HOH X 2 302 72 HOH HOH . 
D 4 HOH X 3 303 83 HOH HOH . 
D 4 HOH X 4 304 76 HOH HOH . 
D 4 HOH X 5 305 112 HOH HOH . 
D 4 HOH X 6 306 68 HOH HOH . 
D 4 HOH X 7 307 71 HOH HOH . 
D 4 HOH X 8 308 78 HOH HOH . 
D 4 HOH X 9 309 66 HOH HOH . 
D 4 HOH X 10 310 16 HOH HOH . 
D 4 HOH X 11 311 115 HOH HOH . 
D 4 HOH X 12 312 17 HOH HOH . 
D 4 HOH X 13 313 14 HOH HOH . 
D 4 HOH X 14 314 30 HOH HOH . 
D 4 HOH X 15 315 40 HOH HOH . 
D 4 HOH X 16 316 128 HOH HOH . 
D 4 HOH X 17 317 89 HOH HOH . 
D 4 HOH X 18 318 111 HOH HOH . 
D 4 HOH X 19 319 3 HOH HOH . 
D 4 HOH X 20 320 34 HOH HOH . 
D 4 HOH X 21 321 54 HOH HOH . 
D 4 HOH X 22 322 130 HOH HOH . 
D 4 HOH X 23 323 108 HOH HOH . 
D 4 HOH X 24 324 52 HOH HOH . 
D 4 HOH X 25 325 25 HOH HOH . 
D 4 HOH X 26 326 110 HOH HOH . 
D 4 HOH X 27 327 77 HOH HOH . 
D 4 HOH X 28 328 79 HOH HOH . 
D 4 HOH X 29 329 7 HOH HOH . 
D 4 HOH X 30 330 119 HOH HOH . 
D 4 HOH X 31 331 98 HOH HOH . 
D 4 HOH X 32 332 48 HOH HOH . 
D 4 HOH X 33 333 97 HOH HOH . 
D 4 HOH X 34 334 35 HOH HOH . 
D 4 HOH X 35 335 24 HOH HOH . 
D 4 HOH X 36 336 126 HOH HOH . 
D 4 HOH X 37 337 86 HOH HOH . 
D 4 HOH X 38 338 131 HOH HOH . 
D 4 HOH X 39 339 61 HOH HOH . 
D 4 HOH X 40 340 11 HOH HOH . 
D 4 HOH X 41 341 12 HOH HOH . 
D 4 HOH X 42 342 92 HOH HOH . 
D 4 HOH X 43 343 6 HOH HOH . 
D 4 HOH X 44 344 105 HOH HOH . 
D 4 HOH X 45 345 13 HOH HOH . 
D 4 HOH X 46 346 8 HOH HOH . 
D 4 HOH X 47 347 96 HOH HOH . 
D 4 HOH X 48 348 87 HOH HOH . 
D 4 HOH X 49 349 122 HOH HOH . 
D 4 HOH X 50 350 106 HOH HOH . 
D 4 HOH X 51 351 107 HOH HOH . 
D 4 HOH X 52 352 94 HOH HOH . 
D 4 HOH X 53 353 27 HOH HOH . 
D 4 HOH X 54 354 73 HOH HOH . 
D 4 HOH X 55 355 60 HOH HOH . 
D 4 HOH X 56 356 132 HOH HOH . 
D 4 HOH X 57 357 1 HOH HOH . 
D 4 HOH X 58 358 55 HOH HOH . 
D 4 HOH X 59 359 69 HOH HOH . 
D 4 HOH X 60 360 23 HOH HOH . 
D 4 HOH X 61 361 81 HOH HOH . 
D 4 HOH X 62 362 21 HOH HOH . 
D 4 HOH X 63 363 49 HOH HOH . 
D 4 HOH X 64 364 100 HOH HOH . 
D 4 HOH X 65 365 10 HOH HOH . 
D 4 HOH X 66 366 59 HOH HOH . 
D 4 HOH X 67 367 74 HOH HOH . 
D 4 HOH X 68 368 38 HOH HOH . 
D 4 HOH X 69 369 47 HOH HOH . 
D 4 HOH X 70 370 65 HOH HOH . 
D 4 HOH X 71 371 4 HOH HOH . 
D 4 HOH X 72 372 70 HOH HOH . 
D 4 HOH X 73 373 37 HOH HOH . 
D 4 HOH X 74 374 9 HOH HOH . 
D 4 HOH X 75 375 102 HOH HOH . 
D 4 HOH X 76 376 84 HOH HOH . 
D 4 HOH X 77 377 41 HOH HOH . 
D 4 HOH X 78 378 45 HOH HOH . 
D 4 HOH X 79 379 91 HOH HOH . 
D 4 HOH X 80 380 117 HOH HOH . 
D 4 HOH X 81 381 58 HOH HOH . 
D 4 HOH X 82 382 18 HOH HOH . 
D 4 HOH X 83 383 67 HOH HOH . 
D 4 HOH X 84 384 44 HOH HOH . 
D 4 HOH X 85 385 20 HOH HOH . 
D 4 HOH X 86 386 19 HOH HOH . 
D 4 HOH X 87 387 57 HOH HOH . 
D 4 HOH X 88 388 2 HOH HOH . 
D 4 HOH X 89 389 36 HOH HOH . 
D 4 HOH X 90 390 82 HOH HOH . 
D 4 HOH X 91 391 109 HOH HOH . 
D 4 HOH X 92 392 29 HOH HOH . 
D 4 HOH X 93 393 56 HOH HOH . 
D 4 HOH X 94 394 5 HOH HOH . 
D 4 HOH X 95 395 31 HOH HOH . 
D 4 HOH X 96 396 104 HOH HOH . 
D 4 HOH X 97 397 39 HOH HOH . 
D 4 HOH X 98 398 42 HOH HOH . 
D 4 HOH X 99 399 32 HOH HOH . 
D 4 HOH X 100 400 22 HOH HOH . 
D 4 HOH X 101 401 46 HOH HOH . 
D 4 HOH X 102 402 88 HOH HOH . 
D 4 HOH X 103 403 26 HOH HOH . 
D 4 HOH X 104 404 121 HOH HOH . 
D 4 HOH X 105 405 101 HOH HOH . 
D 4 HOH X 106 406 28 HOH HOH . 
D 4 HOH X 107 407 33 HOH HOH . 
D 4 HOH X 108 408 75 HOH HOH . 
D 4 HOH X 109 409 51 HOH HOH . 
D 4 HOH X 110 410 15 HOH HOH . 
D 4 HOH X 111 411 64 HOH HOH . 
D 4 HOH X 112 412 103 HOH HOH . 
D 4 HOH X 113 413 62 HOH HOH . 
D 4 HOH X 114 414 118 HOH HOH . 
D 4 HOH X 115 415 125 HOH HOH . 
D 4 HOH X 116 416 127 HOH HOH . 
D 4 HOH X 117 417 114 HOH HOH . 
D 4 HOH X 118 418 123 HOH HOH . 
D 4 HOH X 119 419 63 HOH HOH . 
D 4 HOH X 120 420 50 HOH HOH . 
D 4 HOH X 121 421 90 HOH HOH . 
D 4 HOH X 122 422 85 HOH HOH . 
D 4 HOH X 123 423 95 HOH HOH . 
D 4 HOH X 124 424 99 HOH HOH . 
D 4 HOH X 125 425 53 HOH HOH . 
D 4 HOH X 126 426 80 HOH HOH . 
D 4 HOH X 127 427 129 HOH HOH . 
D 4 HOH X 128 428 93 HOH HOH . 
D 4 HOH X 129 429 120 HOH HOH . 
D 4 HOH X 130 430 116 HOH HOH . 
D 4 HOH X 131 431 113 HOH HOH . 
D 4 HOH X 132 432 124 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 15.902 -0.209 -1.639 1 45.72 ? C1 GOL 205 X 1 
HETATM 2 O O1 GOL . . . C 3 15.051 -1.175 -1.071 1 45.29 ? O1 GOL 205 X 1 
HETATM 3 C C2 GOL . . . C 3 15.461 1.117 -1.059 0.5 44.12 ? C2 GOL 205 X 1 
HETATM 4 O O2 GOL . . . C 3 16.579 1.969 -0.95 1 47.7 ? O2 GOL 205 X 1 
HETATM 5 C C3 GOL . . . C 3 14.441 1.699 -2.019 1 41.56 ? C3 GOL 205 X 1 
HETATM 6 O O3 GOL . . . C 3 13.9 0.638 -2.775 1 37.46 ? O3 GOL 205 X 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#