data_2D8O
#
_model_server_result.job_id            j_YrZmBPJBz6gFOMiROWWQ 
_model_server_result.datetime_utc      '2024-12-28 05:46:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2d8o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    2D8O 
#
_exptl.entry_id    2D8O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              126.904 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IODIDE ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2D8O 
_cell.length_a            57.144 
_cell.length_b            57.144 
_cell.length_c            151.905 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2D8O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 66 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 71 A CYS 71 1_555 A SG CYS 77 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 A SG CYS 121 A CYS 121 1_555 A SG CYS 193 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 A SG CYS 126 A CYS 126 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 A SG CYS 134 A CYS 134 1_555 A SG CYS 145 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf7 A SG CYS 149 A CYS 149 1_555 A SG CYS 158 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf8 A SG CYS 159 A CYS 159 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 A C CYS 56 A CYS 56 1_555 A N IYR 57 A IYR 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C IYR 57 A IYR 57 1_555 A N PHE 58 A PHE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 A C GLN 94 A GLN 94 1_555 A N TYI 95 A TYI 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C TYI 95 A TYI 95 1_555 A N GLY 96 A GLY 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C GLU 168 A GLU 168 1_555 A N IYR 169 A IYR 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 A C IYR 169 A IYR 169 1_555 A N SER 170 A SER 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'I -1' 
_chem_comp.formula_weight    126.904 
_chem_comp.id                IOD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IODIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2D8O 
_atom_sites.fract_transf_matrix[1][1]    0.0175 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0175 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006583 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IOD A 1 301 301 IOD IOD . 
C 2 IOD A 1 302 302 IOD IOD . 
D 2 IOD A 1 303 303 IOD IOD . 
E 3 HOH A 1 304 1 HOH HOH . 
E 3 HOH A 2 305 2 HOH HOH . 
E 3 HOH A 3 306 3 HOH HOH . 
E 3 HOH A 4 307 4 HOH HOH . 
E 3 HOH A 5 308 5 HOH HOH . 
E 3 HOH A 6 309 6 HOH HOH . 
E 3 HOH A 7 310 7 HOH HOH . 
E 3 HOH A 8 311 8 HOH HOH . 
E 3 HOH A 9 312 9 HOH HOH . 
E 3 HOH A 10 313 10 HOH HOH . 
E 3 HOH A 11 314 11 HOH HOH . 
E 3 HOH A 12 315 12 HOH HOH . 
E 3 HOH A 13 316 13 HOH HOH . 
E 3 HOH A 14 317 14 HOH HOH . 
E 3 HOH A 15 318 15 HOH HOH . 
E 3 HOH A 16 319 16 HOH HOH . 
E 3 HOH A 17 320 17 HOH HOH . 
E 3 HOH A 18 321 18 HOH HOH . 
E 3 HOH A 19 322 19 HOH HOH . 
E 3 HOH A 20 323 20 HOH HOH . 
E 3 HOH A 21 324 21 HOH HOH . 
E 3 HOH A 22 325 22 HOH HOH . 
E 3 HOH A 23 326 23 HOH HOH . 
E 3 HOH A 24 327 24 HOH HOH . 
E 3 HOH A 25 328 25 HOH HOH . 
E 3 HOH A 26 329 26 HOH HOH . 
E 3 HOH A 27 330 27 HOH HOH . 
E 3 HOH A 28 331 28 HOH HOH . 
E 3 HOH A 29 332 29 HOH HOH . 
E 3 HOH A 30 333 30 HOH HOH . 
E 3 HOH A 31 334 31 HOH HOH . 
E 3 HOH A 32 335 32 HOH HOH . 
E 3 HOH A 33 336 33 HOH HOH . 
E 3 HOH A 34 337 34 HOH HOH . 
E 3 HOH A 35 338 35 HOH HOH . 
E 3 HOH A 36 339 36 HOH HOH . 
E 3 HOH A 37 340 37 HOH HOH . 
E 3 HOH A 38 341 38 HOH HOH . 
E 3 HOH A 39 342 39 HOH HOH . 
E 3 HOH A 40 343 40 HOH HOH . 
E 3 HOH A 41 344 41 HOH HOH . 
E 3 HOH A 42 345 42 HOH HOH . 
E 3 HOH A 43 346 43 HOH HOH . 
E 3 HOH A 44 347 44 HOH HOH . 
E 3 HOH A 45 348 45 HOH HOH . 
E 3 HOH A 46 349 46 HOH HOH . 
E 3 HOH A 47 350 47 HOH HOH . 
E 3 HOH A 48 351 48 HOH HOH . 
E 3 HOH A 49 352 49 HOH HOH . 
E 3 HOH A 50 353 50 HOH HOH . 
E 3 HOH A 51 354 51 HOH HOH . 
E 3 HOH A 52 355 52 HOH HOH . 
E 3 HOH A 53 356 53 HOH HOH . 
E 3 HOH A 54 357 54 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           I 
_atom_site.label_atom_id         I 
_atom_site.label_comp_id         IOD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               13.534 
_atom_site.Cartn_y               27.953 
_atom_site.Cartn_z               35.267 
_atom_site.occupancy             0.73 
_atom_site.B_iso_or_equiv        32.07 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          I 
_atom_site.auth_comp_id          IOD 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#