data_2D8W
#
_model_server_result.job_id            L59dZdoWy6cZlQIic0BeAg 
_model_server_result.datetime_utc      '2024-11-16 13:02:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2d8w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    2D8W 
#
_exptl.entry_id    2D8W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              126.904 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IODIDE ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2D8W 
_cell.length_a            54.323 
_cell.length_b            58.197 
_cell.length_c            66.62 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2D8W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 13 1_555 A SG CYS 137 A CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf2 A SG CYS 25 A CYS 31 1_555 A SG CYS 41 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 A SG CYS 109 A CYS 115 1_555 A SG CYS 210 A CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 A SG CYS 116 A CYS 122 1_555 A SG CYS 183 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 A SG CYS 148 A CYS 154 1_555 A SG CYS 162 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 A SG CYS 173 A CYS 179 1_555 A SG CYS 197 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
covale ? covale1 A C CYS 41 A CYS 47 1_555 A N IYR 42 A IYR 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C IYR 42 A IYR 48 1_555 A N LYS 43 A LYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 A C SER 130 A SER 136 1_555 A N IYR 131 A IYR 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 A C IYR 131 A IYR 137 1_555 A N PRO 132 A PRO 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale5 A C GLY 164 A GLY 170 1_555 A N TYI 165 A TYI 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 A C TYI 165 A TYI 171 1_555 A N LEU 166 A LEU 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
metalc ? metalc1 A OE1 GLU 52 A GLU 58 1_555 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc2 A O ASN 54 A ASN 60 1_555 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc3 A O VAL 57 A VAL 63 1_555 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc4 A OE2 GLU 62 A GLU 68 1_555 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? 
metalc ? metalc5 B CA CA . A CA 300 1_555 F O HOH . A HOH 495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc6 B CA CA . A CA 300 1_555 F O HOH . A HOH 496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? 
#
_chem_comp.formula           'I -1' 
_chem_comp.formula_weight    126.904 
_chem_comp.id                IOD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IODIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2D8W 
_atom_sites.fract_transf_matrix[1][1]    0.018408 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017183 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015011 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 300 300 CA CA . 
C 3 IOD A 1 401 401 IOD IOD . 
D 3 IOD A 1 402 402 IOD IOD . 
E 3 IOD A 1 403 403 IOD IOD . 
F 4 HOH A 1 404 1 HOH HOH . 
F 4 HOH A 2 405 2 HOH HOH . 
F 4 HOH A 3 406 3 HOH HOH . 
F 4 HOH A 4 407 4 HOH HOH . 
F 4 HOH A 5 408 5 HOH HOH . 
F 4 HOH A 6 409 6 HOH HOH . 
F 4 HOH A 7 410 7 HOH HOH . 
F 4 HOH A 8 411 8 HOH HOH . 
F 4 HOH A 9 412 9 HOH HOH . 
F 4 HOH A 10 413 10 HOH HOH . 
F 4 HOH A 11 414 11 HOH HOH . 
F 4 HOH A 12 415 12 HOH HOH . 
F 4 HOH A 13 416 13 HOH HOH . 
F 4 HOH A 14 417 14 HOH HOH . 
F 4 HOH A 15 418 15 HOH HOH . 
F 4 HOH A 16 419 16 HOH HOH . 
F 4 HOH A 17 420 17 HOH HOH . 
F 4 HOH A 18 421 18 HOH HOH . 
F 4 HOH A 19 422 19 HOH HOH . 
F 4 HOH A 20 423 20 HOH HOH . 
F 4 HOH A 21 424 21 HOH HOH . 
F 4 HOH A 22 425 22 HOH HOH . 
F 4 HOH A 23 426 23 HOH HOH . 
F 4 HOH A 24 427 24 HOH HOH . 
F 4 HOH A 25 428 25 HOH HOH . 
F 4 HOH A 26 429 26 HOH HOH . 
F 4 HOH A 27 430 27 HOH HOH . 
F 4 HOH A 28 431 28 HOH HOH . 
F 4 HOH A 29 432 29 HOH HOH . 
F 4 HOH A 30 433 30 HOH HOH . 
F 4 HOH A 31 434 31 HOH HOH . 
F 4 HOH A 32 435 32 HOH HOH . 
F 4 HOH A 33 436 33 HOH HOH . 
F 4 HOH A 34 437 34 HOH HOH . 
F 4 HOH A 35 438 35 HOH HOH . 
F 4 HOH A 36 439 36 HOH HOH . 
F 4 HOH A 37 440 37 HOH HOH . 
F 4 HOH A 38 441 38 HOH HOH . 
F 4 HOH A 39 442 39 HOH HOH . 
F 4 HOH A 40 443 40 HOH HOH . 
F 4 HOH A 41 444 41 HOH HOH . 
F 4 HOH A 42 445 42 HOH HOH . 
F 4 HOH A 43 446 43 HOH HOH . 
F 4 HOH A 44 447 44 HOH HOH . 
F 4 HOH A 45 448 45 HOH HOH . 
F 4 HOH A 46 449 46 HOH HOH . 
F 4 HOH A 47 450 47 HOH HOH . 
F 4 HOH A 48 451 48 HOH HOH . 
F 4 HOH A 49 452 49 HOH HOH . 
F 4 HOH A 50 453 50 HOH HOH . 
F 4 HOH A 51 454 51 HOH HOH . 
F 4 HOH A 52 455 52 HOH HOH . 
F 4 HOH A 53 456 53 HOH HOH . 
F 4 HOH A 54 457 54 HOH HOH . 
F 4 HOH A 55 458 55 HOH HOH . 
F 4 HOH A 56 459 56 HOH HOH . 
F 4 HOH A 57 460 57 HOH HOH . 
F 4 HOH A 58 461 58 HOH HOH . 
F 4 HOH A 59 462 59 HOH HOH . 
F 4 HOH A 60 463 60 HOH HOH . 
F 4 HOH A 61 464 61 HOH HOH . 
F 4 HOH A 62 465 62 HOH HOH . 
F 4 HOH A 63 466 63 HOH HOH . 
F 4 HOH A 64 467 64 HOH HOH . 
F 4 HOH A 65 468 65 HOH HOH . 
F 4 HOH A 66 469 66 HOH HOH . 
F 4 HOH A 67 470 67 HOH HOH . 
F 4 HOH A 68 471 68 HOH HOH . 
F 4 HOH A 69 472 69 HOH HOH . 
F 4 HOH A 70 473 70 HOH HOH . 
F 4 HOH A 71 474 71 HOH HOH . 
F 4 HOH A 72 475 72 HOH HOH . 
F 4 HOH A 73 476 73 HOH HOH . 
F 4 HOH A 74 477 74 HOH HOH . 
F 4 HOH A 75 478 75 HOH HOH . 
F 4 HOH A 76 479 76 HOH HOH . 
F 4 HOH A 77 480 77 HOH HOH . 
F 4 HOH A 78 481 78 HOH HOH . 
F 4 HOH A 79 482 79 HOH HOH . 
F 4 HOH A 80 483 80 HOH HOH . 
F 4 HOH A 81 484 81 HOH HOH . 
F 4 HOH A 82 485 82 HOH HOH . 
F 4 HOH A 83 486 83 HOH HOH . 
F 4 HOH A 84 487 84 HOH HOH . 
F 4 HOH A 85 488 85 HOH HOH . 
F 4 HOH A 86 489 86 HOH HOH . 
F 4 HOH A 87 490 87 HOH HOH . 
F 4 HOH A 88 491 88 HOH HOH . 
F 4 HOH A 89 492 89 HOH HOH . 
F 4 HOH A 90 493 90 HOH HOH . 
F 4 HOH A 91 494 91 HOH HOH . 
F 4 HOH A 92 495 92 HOH HOH . 
F 4 HOH A 93 496 93 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           I 
_atom_site.label_atom_id         I 
_atom_site.label_comp_id         IOD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               29.076 
_atom_site.Cartn_y               -4.588 
_atom_site.Cartn_z               17.606 
_atom_site.occupancy             0.56 
_atom_site.B_iso_or_equiv        42.83 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          I 
_atom_site.auth_comp_id          IOD 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#