data_2DAA
#
_model_server_result.job_id            izHTjyu07D7ZnV4zKm6l3A 
_model_server_result.datetime_utc      '2024-12-12 01:49:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2daa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":285}' 
#
_entry.id    2DAA 
#
_exptl.entry_id    2DAA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              333.234 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2DAA 
_cell.length_a            77.301 
_cell.length_b            91.018 
_cell.length_c            89.701 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2DAA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C11 H16 N3 O7 P' 
_chem_comp.formula_weight    333.234 
_chem_comp.id                DCS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     D-PYRIDOXYL-N,O-CYCLOSERYLAMIDE-5-MONOPHOSPHATE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 DCS doub 83 n y 
N1 C6 DCS sing 84 n y 
C2 C2A DCS sing 85 n n 
C2 C3 DCS sing 86 n y 
C2A H2A1 DCS sing 87 n n 
C2A H2A2 DCS sing 88 n n 
C2A H2A3 DCS sing 89 n n 
C3 O3 DCS sing 90 n n 
C3 C4 DCS doub 91 n y 
O3 HO3 DCS sing 92 n n 
C4 C4A DCS sing 93 n n 
C4 C5 DCS sing 94 n y 
C4A N DCS sing 95 n n 
C4A H4A1 DCS sing 96 n n 
C4A H4A2 DCS sing 97 n n 
C5 C6 DCS doub 98 n y 
C5 C5A DCS sing 99 n n 
C6 H6 DCS sing 100 n n 
C5A O4P DCS sing 101 n n 
C5A H5A1 DCS sing 102 n n 
C5A H5A2 DCS sing 103 n n 
O4P P DCS sing 104 n n 
P O1P DCS doub 105 n n 
P O2P DCS sing 106 n n 
P O3P DCS sing 107 n n 
O2P HOP2 DCS sing 108 n n 
O3P HOP3 DCS sing 109 n n 
N CA DCS sing 110 n n 
N HN DCS sing 111 n n 
CA C DCS sing 112 n n 
CA CB DCS sing 113 n n 
CA HA DCS sing 114 n n 
C O DCS doub 115 n n 
C ND DCS sing 116 n n 
ND OG DCS sing 117 n n 
ND HND DCS sing 118 n n 
OG CB DCS sing 119 n n 
CB HB1 DCS sing 120 n n 
CB HB2 DCS sing 121 n n 
#
_atom_sites.entry_id                     2DAA 
_atom_sites.fract_transf_matrix[1][1]    0.012936 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010987 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011148 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DCS A 1 285 285 DCS SCP . 
D 2 DCS B 1 285 285 DCS SCP . 
E 3 HOH A 1 601 601 HOH HOH . 
E 3 HOH A 2 605 605 HOH HOH . 
E 3 HOH A 3 606 606 HOH HOH . 
E 3 HOH A 4 610 610 HOH HOH . 
E 3 HOH A 5 612 612 HOH HOH . 
E 3 HOH A 6 614 614 HOH HOH . 
E 3 HOH A 7 615 615 HOH HOH . 
E 3 HOH A 8 617 617 HOH HOH . 
E 3 HOH A 9 621 621 HOH HOH . 
E 3 HOH A 10 622 622 HOH HOH . 
E 3 HOH A 11 623 623 HOH HOH . 
E 3 HOH A 12 624 624 HOH HOH . 
E 3 HOH A 13 625 625 HOH HOH . 
E 3 HOH A 14 627 627 HOH HOH . 
E 3 HOH A 15 629 629 HOH HOH . 
E 3 HOH A 16 632 632 HOH HOH . 
E 3 HOH A 17 633 633 HOH HOH . 
E 3 HOH A 18 638 638 HOH HOH . 
E 3 HOH A 19 639 639 HOH HOH . 
E 3 HOH A 20 643 643 HOH HOH . 
E 3 HOH A 21 644 644 HOH HOH . 
E 3 HOH A 22 646 646 HOH HOH . 
E 3 HOH A 23 647 647 HOH HOH . 
E 3 HOH A 24 648 648 HOH HOH . 
E 3 HOH A 25 650 650 HOH HOH . 
E 3 HOH A 26 651 651 HOH HOH . 
E 3 HOH A 27 654 654 HOH HOH . 
E 3 HOH A 28 655 655 HOH HOH . 
E 3 HOH A 29 658 658 HOH HOH . 
E 3 HOH A 30 660 660 HOH HOH . 
E 3 HOH A 31 662 662 HOH HOH . 
E 3 HOH A 32 663 663 HOH HOH . 
E 3 HOH A 33 664 664 HOH HOH . 
E 3 HOH A 34 665 665 HOH HOH . 
E 3 HOH A 35 666 666 HOH HOH . 
E 3 HOH A 36 667 667 HOH HOH . 
E 3 HOH A 37 668 668 HOH HOH . 
E 3 HOH A 38 671 671 HOH HOH . 
E 3 HOH A 39 673 673 HOH HOH . 
E 3 HOH A 40 678 678 HOH HOH . 
E 3 HOH A 41 680 680 HOH HOH . 
E 3 HOH A 42 681 681 HOH HOH . 
E 3 HOH A 43 682 682 HOH HOH . 
E 3 HOH A 44 684 684 HOH HOH . 
E 3 HOH A 45 685 685 HOH HOH . 
E 3 HOH A 46 686 686 HOH HOH . 
E 3 HOH A 47 687 687 HOH HOH . 
E 3 HOH A 48 692 692 HOH HOH . 
E 3 HOH A 49 693 693 HOH HOH . 
E 3 HOH A 50 695 695 HOH HOH . 
E 3 HOH A 51 696 696 HOH HOH . 
E 3 HOH A 52 697 697 HOH HOH . 
E 3 HOH A 53 699 699 HOH HOH . 
E 3 HOH A 54 700 700 HOH HOH . 
E 3 HOH A 55 703 703 HOH HOH . 
E 3 HOH A 56 704 704 HOH HOH . 
E 3 HOH A 57 706 706 HOH HOH . 
E 3 HOH A 58 707 707 HOH HOH . 
E 3 HOH A 59 709 709 HOH HOH . 
E 3 HOH A 60 710 710 HOH HOH . 
E 3 HOH A 61 711 711 HOH HOH . 
E 3 HOH A 62 712 712 HOH HOH . 
E 3 HOH A 63 713 713 HOH HOH . 
E 3 HOH A 64 714 714 HOH HOH . 
E 3 HOH A 65 715 715 HOH HOH . 
E 3 HOH A 66 716 716 HOH HOH . 
E 3 HOH A 67 718 718 HOH HOH . 
E 3 HOH A 68 720 720 HOH HOH . 
E 3 HOH A 69 722 722 HOH HOH . 
E 3 HOH A 70 723 723 HOH HOH . 
E 3 HOH A 71 726 726 HOH HOH . 
E 3 HOH A 72 727 727 HOH HOH . 
E 3 HOH A 73 729 729 HOH HOH . 
E 3 HOH A 74 732 732 HOH HOH . 
E 3 HOH A 75 740 740 HOH HOH . 
E 3 HOH A 76 743 743 HOH HOH . 
E 3 HOH A 77 747 747 HOH HOH . 
E 3 HOH A 78 748 748 HOH HOH . 
E 3 HOH A 79 751 751 HOH HOH . 
E 3 HOH A 80 753 753 HOH HOH . 
E 3 HOH A 81 755 755 HOH HOH . 
E 3 HOH A 82 756 756 HOH HOH . 
E 3 HOH A 83 757 757 HOH HOH . 
E 3 HOH A 84 759 759 HOH HOH . 
E 3 HOH A 85 760 760 HOH HOH . 
E 3 HOH A 86 762 762 HOH HOH . 
E 3 HOH A 87 763 763 HOH HOH . 
E 3 HOH A 88 764 764 HOH HOH . 
E 3 HOH A 89 765 765 HOH HOH . 
E 3 HOH A 90 768 768 HOH HOH . 
E 3 HOH A 91 769 769 HOH HOH . 
E 3 HOH A 92 770 770 HOH HOH . 
E 3 HOH A 93 772 772 HOH HOH . 
E 3 HOH A 94 773 773 HOH HOH . 
E 3 HOH A 95 778 778 HOH HOH . 
E 3 HOH A 96 780 780 HOH HOH . 
E 3 HOH A 97 781 781 HOH HOH . 
E 3 HOH A 98 782 782 HOH HOH . 
E 3 HOH A 99 783 783 HOH HOH . 
E 3 HOH A 100 785 785 HOH HOH . 
E 3 HOH A 101 789 789 HOH HOH . 
E 3 HOH A 102 794 794 HOH HOH . 
E 3 HOH A 103 795 795 HOH HOH . 
E 3 HOH A 104 797 797 HOH HOH . 
E 3 HOH A 105 799 799 HOH HOH . 
F 3 HOH B 1 602 602 HOH HOH . 
F 3 HOH B 2 603 603 HOH HOH . 
F 3 HOH B 3 604 604 HOH HOH . 
F 3 HOH B 4 607 607 HOH HOH . 
F 3 HOH B 5 608 608 HOH HOH . 
F 3 HOH B 6 609 609 HOH HOH . 
F 3 HOH B 7 611 611 HOH HOH . 
F 3 HOH B 8 613 613 HOH HOH . 
F 3 HOH B 9 616 616 HOH HOH . 
F 3 HOH B 10 618 618 HOH HOH . 
F 3 HOH B 11 619 619 HOH HOH . 
F 3 HOH B 12 620 620 HOH HOH . 
F 3 HOH B 13 626 626 HOH HOH . 
F 3 HOH B 14 628 628 HOH HOH . 
F 3 HOH B 15 630 630 HOH HOH . 
F 3 HOH B 16 631 631 HOH HOH . 
F 3 HOH B 17 634 634 HOH HOH . 
F 3 HOH B 18 635 635 HOH HOH . 
F 3 HOH B 19 636 636 HOH HOH . 
F 3 HOH B 20 637 637 HOH HOH . 
F 3 HOH B 21 640 640 HOH HOH . 
F 3 HOH B 22 641 641 HOH HOH . 
F 3 HOH B 23 642 642 HOH HOH . 
F 3 HOH B 24 645 645 HOH HOH . 
F 3 HOH B 25 649 649 HOH HOH . 
F 3 HOH B 26 652 652 HOH HOH . 
F 3 HOH B 27 653 653 HOH HOH . 
F 3 HOH B 28 656 656 HOH HOH . 
F 3 HOH B 29 657 657 HOH HOH . 
F 3 HOH B 30 659 659 HOH HOH . 
F 3 HOH B 31 661 661 HOH HOH . 
F 3 HOH B 32 669 669 HOH HOH . 
F 3 HOH B 33 670 670 HOH HOH . 
F 3 HOH B 34 672 672 HOH HOH . 
F 3 HOH B 35 674 674 HOH HOH . 
F 3 HOH B 36 675 675 HOH HOH . 
F 3 HOH B 37 676 676 HOH HOH . 
F 3 HOH B 38 677 677 HOH HOH . 
F 3 HOH B 39 679 679 HOH HOH . 
F 3 HOH B 40 683 683 HOH HOH . 
F 3 HOH B 41 688 688 HOH HOH . 
F 3 HOH B 42 689 689 HOH HOH . 
F 3 HOH B 43 690 690 HOH HOH . 
F 3 HOH B 44 691 691 HOH HOH . 
F 3 HOH B 45 694 694 HOH HOH . 
F 3 HOH B 46 698 698 HOH HOH . 
F 3 HOH B 47 701 701 HOH HOH . 
F 3 HOH B 48 702 702 HOH HOH . 
F 3 HOH B 49 705 705 HOH HOH . 
F 3 HOH B 50 708 708 HOH HOH . 
F 3 HOH B 51 717 717 HOH HOH . 
F 3 HOH B 52 719 719 HOH HOH . 
F 3 HOH B 53 721 721 HOH HOH . 
F 3 HOH B 54 724 724 HOH HOH . 
F 3 HOH B 55 725 725 HOH HOH . 
F 3 HOH B 56 728 728 HOH HOH . 
F 3 HOH B 57 730 730 HOH HOH . 
F 3 HOH B 58 731 731 HOH HOH . 
F 3 HOH B 59 733 733 HOH HOH . 
F 3 HOH B 60 734 734 HOH HOH . 
F 3 HOH B 61 735 735 HOH HOH . 
F 3 HOH B 62 736 736 HOH HOH . 
F 3 HOH B 63 737 737 HOH HOH . 
F 3 HOH B 64 738 738 HOH HOH . 
F 3 HOH B 65 739 739 HOH HOH . 
F 3 HOH B 66 741 741 HOH HOH . 
F 3 HOH B 67 742 742 HOH HOH . 
F 3 HOH B 68 744 744 HOH HOH . 
F 3 HOH B 69 745 745 HOH HOH . 
F 3 HOH B 70 746 746 HOH HOH . 
F 3 HOH B 71 749 749 HOH HOH . 
F 3 HOH B 72 750 750 HOH HOH . 
F 3 HOH B 73 752 752 HOH HOH . 
F 3 HOH B 74 754 754 HOH HOH . 
F 3 HOH B 75 758 758 HOH HOH . 
F 3 HOH B 76 761 761 HOH HOH . 
F 3 HOH B 77 766 766 HOH HOH . 
F 3 HOH B 78 767 767 HOH HOH . 
F 3 HOH B 79 771 771 HOH HOH . 
F 3 HOH B 80 774 774 HOH HOH . 
F 3 HOH B 81 775 775 HOH HOH . 
F 3 HOH B 82 776 776 HOH HOH . 
F 3 HOH B 83 777 777 HOH HOH . 
F 3 HOH B 84 779 779 HOH HOH . 
F 3 HOH B 85 784 784 HOH HOH . 
F 3 HOH B 86 786 786 HOH HOH . 
F 3 HOH B 87 787 787 HOH HOH . 
F 3 HOH B 88 788 788 HOH HOH . 
F 3 HOH B 89 790 790 HOH HOH . 
F 3 HOH B 90 791 791 HOH HOH . 
F 3 HOH B 91 792 792 HOH HOH . 
F 3 HOH B 92 793 793 HOH HOH . 
F 3 HOH B 93 796 796 HOH HOH . 
F 3 HOH B 94 798 798 HOH HOH . 
F 3 HOH B 95 800 800 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 DCS . . . D 2 43.195 27.292 33.382 1 13.77 ? N1 DCS 285 B 1 
HETATM 2 C C2 DCS . . . D 2 43.322 27.921 32.194 1 15.77 ? C2 DCS 285 B 1 
HETATM 3 C C2A DCS . . . D 2 42.158 28.775 31.769 1 9.38 ? C2A DCS 285 B 1 
HETATM 4 C C3 DCS . . . D 2 44.464 27.798 31.394 1 14.99 ? C3 DCS 285 B 1 
HETATM 5 O O3 DCS . . . D 2 44.467 28.414 30.154 1 14.07 ? O3 DCS 285 B 1 
HETATM 6 C C4 DCS . . . D 2 45.569 27.038 31.866 1 17.83 ? C4 DCS 285 B 1 
HETATM 7 C C4A DCS . . . D 2 46.826 26.808 31.045 1 15.4 ? C4A DCS 285 B 1 
HETATM 8 C C5 DCS . . . D 2 45.456 26.46 33.145 1 14.72 ? C5 DCS 285 B 1 
HETATM 9 C C6 DCS . . . D 2 44.248 26.578 33.835 1 14.59 ? C6 DCS 285 B 1 
HETATM 10 C C5A DCS . . . D 2 46.598 25.703 33.771 1 13.2 ? C5A DCS 285 B 1 
HETATM 11 O O4P DCS . . . D 2 46.641 24.407 33.192 1 11.99 ? O4P DCS 285 B 1 
HETATM 12 P P DCS . . . D 2 47.977 23.631 33.237 1 10 ? P DCS 285 B 1 
HETATM 13 O O1P DCS . . . D 2 47.748 22.275 32.698 1 5.91 ? O1P DCS 285 B 1 
HETATM 14 O O2P DCS . . . D 2 48.978 24.344 32.41 1 9.16 ? O2P DCS 285 B 1 
HETATM 15 O O3P DCS . . . D 2 48.445 23.541 34.655 1 17.02 ? O3P DCS 285 B 1 
HETATM 16 N N DCS . . . D 2 46.84 27.521 29.806 1 14.01 ? N DCS 285 B 1 
HETATM 17 C CA DCS . . . D 2 47.915 27.736 29.062 1 14.18 ? CA DCS 285 B 1 
HETATM 18 C C DCS . . . D 2 47.949 28.49 27.807 1 14.8 ? C DCS 285 B 1 
HETATM 19 O O DCS . . . D 2 46.951 28.774 27.157 1 17.52 ? O DCS 285 B 1 
HETATM 20 N ND DCS . . . D 2 49.214 28.824 27.574 1 15.87 ? ND DCS 285 B 1 
HETATM 21 O OG DCS . . . D 2 50.115 28.112 28.394 1 16.22 ? OG DCS 285 B 1 
HETATM 22 C CB DCS . . . D 2 49.36 27.312 29.299 1 10.19 ? CB DCS 285 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           22 
#