data_2DAB
#
_model_server_result.job_id            Rtpwvkh1X6AOrSghjzWYtQ 
_model_server_result.datetime_utc      '2024-11-04 22:52:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2dab 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":285}' 
#
_entry.id    2DAB 
#
_exptl.entry_id    2DAB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2DAB 
_cell.length_a            77.51 
_cell.length_b            91.63 
_cell.length_c            88.83 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2DAB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 145 A LYS 145 1_555 C C4A PLP . A PLP 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 ? 
covale ? covale2 B NZ LYS 145 B LYS 145 1_555 D C4A PLP . B PLP 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
_atom_sites.entry_id                     2DAB 
_atom_sites.fract_transf_matrix[1][1]    0.012902 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010913 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011257 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 285 285 PLP PLP . 
D 2 PLP B 1 285 285 PLP PLP . 
E 3 HOH A 1 307 307 HOH HOH . 
E 3 HOH A 2 308 308 HOH HOH . 
E 3 HOH A 3 311 311 HOH HOH . 
E 3 HOH A 4 315 315 HOH HOH . 
E 3 HOH A 5 316 316 HOH HOH . 
E 3 HOH A 6 317 317 HOH HOH . 
E 3 HOH A 7 322 322 HOH HOH . 
E 3 HOH A 8 324 324 HOH HOH . 
E 3 HOH A 9 327 327 HOH HOH . 
E 3 HOH A 10 328 328 HOH HOH . 
E 3 HOH A 11 332 332 HOH HOH . 
E 3 HOH A 12 342 342 HOH HOH . 
E 3 HOH A 13 343 343 HOH HOH . 
E 3 HOH A 14 344 344 HOH HOH . 
E 3 HOH A 15 346 346 HOH HOH . 
E 3 HOH A 16 347 347 HOH HOH . 
E 3 HOH A 17 348 348 HOH HOH . 
E 3 HOH A 18 350 350 HOH HOH . 
E 3 HOH A 19 351 351 HOH HOH . 
E 3 HOH A 20 352 352 HOH HOH . 
E 3 HOH A 21 353 353 HOH HOH . 
E 3 HOH A 22 355 355 HOH HOH . 
E 3 HOH A 23 356 356 HOH HOH . 
E 3 HOH A 24 358 358 HOH HOH . 
E 3 HOH A 25 360 360 HOH HOH . 
E 3 HOH A 26 361 361 HOH HOH . 
E 3 HOH A 27 362 362 HOH HOH . 
E 3 HOH A 28 363 363 HOH HOH . 
E 3 HOH A 29 364 364 HOH HOH . 
E 3 HOH A 30 365 365 HOH HOH . 
E 3 HOH A 31 366 366 HOH HOH . 
E 3 HOH A 32 367 367 HOH HOH . 
E 3 HOH A 33 368 368 HOH HOH . 
E 3 HOH A 34 372 372 HOH HOH . 
E 3 HOH A 35 373 373 HOH HOH . 
E 3 HOH A 36 374 374 HOH HOH . 
E 3 HOH A 37 376 376 HOH HOH . 
E 3 HOH A 38 377 377 HOH HOH . 
E 3 HOH A 39 379 379 HOH HOH . 
E 3 HOH A 40 380 380 HOH HOH . 
E 3 HOH A 41 381 381 HOH HOH . 
E 3 HOH A 42 382 382 HOH HOH . 
E 3 HOH A 43 384 384 HOH HOH . 
E 3 HOH A 44 385 385 HOH HOH . 
E 3 HOH A 45 387 387 HOH HOH . 
E 3 HOH A 46 388 388 HOH HOH . 
E 3 HOH A 47 389 389 HOH HOH . 
E 3 HOH A 48 393 393 HOH HOH . 
E 3 HOH A 49 396 396 HOH HOH . 
E 3 HOH A 50 399 399 HOH HOH . 
E 3 HOH A 51 402 402 HOH HOH . 
E 3 HOH A 52 403 403 HOH HOH . 
E 3 HOH A 53 405 405 HOH HOH . 
E 3 HOH A 54 407 407 HOH HOH . 
E 3 HOH A 55 408 408 HOH HOH . 
E 3 HOH A 56 410 410 HOH HOH . 
E 3 HOH A 57 411 411 HOH HOH . 
E 3 HOH A 58 412 412 HOH HOH . 
E 3 HOH A 59 413 413 HOH HOH . 
E 3 HOH A 60 414 414 HOH HOH . 
E 3 HOH A 61 415 415 HOH HOH . 
E 3 HOH A 62 418 418 HOH HOH . 
E 3 HOH A 63 419 419 HOH HOH . 
E 3 HOH A 64 422 422 HOH HOH . 
E 3 HOH A 65 424 424 HOH HOH . 
E 3 HOH A 66 425 425 HOH HOH . 
E 3 HOH A 67 426 426 HOH HOH . 
E 3 HOH A 68 427 427 HOH HOH . 
E 3 HOH A 69 429 429 HOH HOH . 
E 3 HOH A 70 431 431 HOH HOH . 
E 3 HOH A 71 433 433 HOH HOH . 
E 3 HOH A 72 435 435 HOH HOH . 
E 3 HOH A 73 437 437 HOH HOH . 
E 3 HOH A 74 439 439 HOH HOH . 
E 3 HOH A 75 440 440 HOH HOH . 
E 3 HOH A 76 441 441 HOH HOH . 
E 3 HOH A 77 442 442 HOH HOH . 
E 3 HOH A 78 443 443 HOH HOH . 
E 3 HOH A 79 444 444 HOH HOH . 
E 3 HOH A 80 449 449 HOH HOH . 
E 3 HOH A 81 450 450 HOH HOH . 
E 3 HOH A 82 451 451 HOH HOH . 
E 3 HOH A 83 452 452 HOH HOH . 
E 3 HOH A 84 453 453 HOH HOH . 
E 3 HOH A 85 454 454 HOH HOH . 
E 3 HOH A 86 456 456 HOH HOH . 
E 3 HOH A 87 460 460 HOH HOH . 
E 3 HOH A 88 461 461 HOH HOH . 
E 3 HOH A 89 462 462 HOH HOH . 
E 3 HOH A 90 463 463 HOH HOH . 
E 3 HOH A 91 464 464 HOH HOH . 
E 3 HOH A 92 465 465 HOH HOH . 
F 3 HOH B 1 301 301 HOH HOH . 
F 3 HOH B 2 302 302 HOH HOH . 
F 3 HOH B 3 303 303 HOH HOH . 
F 3 HOH B 4 304 304 HOH HOH . 
F 3 HOH B 5 305 305 HOH HOH . 
F 3 HOH B 6 306 306 HOH HOH . 
F 3 HOH B 7 309 309 HOH HOH . 
F 3 HOH B 8 310 310 HOH HOH . 
F 3 HOH B 9 312 312 HOH HOH . 
F 3 HOH B 10 313 313 HOH HOH . 
F 3 HOH B 11 314 314 HOH HOH . 
F 3 HOH B 12 318 318 HOH HOH . 
F 3 HOH B 13 319 319 HOH HOH . 
F 3 HOH B 14 320 320 HOH HOH . 
F 3 HOH B 15 321 321 HOH HOH . 
F 3 HOH B 16 323 323 HOH HOH . 
F 3 HOH B 17 325 325 HOH HOH . 
F 3 HOH B 18 326 326 HOH HOH . 
F 3 HOH B 19 329 329 HOH HOH . 
F 3 HOH B 20 330 330 HOH HOH . 
F 3 HOH B 21 331 331 HOH HOH . 
F 3 HOH B 22 333 333 HOH HOH . 
F 3 HOH B 23 334 334 HOH HOH . 
F 3 HOH B 24 335 335 HOH HOH . 
F 3 HOH B 25 336 336 HOH HOH . 
F 3 HOH B 26 337 337 HOH HOH . 
F 3 HOH B 27 338 338 HOH HOH . 
F 3 HOH B 28 339 339 HOH HOH . 
F 3 HOH B 29 340 340 HOH HOH . 
F 3 HOH B 30 341 341 HOH HOH . 
F 3 HOH B 31 345 345 HOH HOH . 
F 3 HOH B 32 349 349 HOH HOH . 
F 3 HOH B 33 354 354 HOH HOH . 
F 3 HOH B 34 357 357 HOH HOH . 
F 3 HOH B 35 359 359 HOH HOH . 
F 3 HOH B 36 369 369 HOH HOH . 
F 3 HOH B 37 370 370 HOH HOH . 
F 3 HOH B 38 371 371 HOH HOH . 
F 3 HOH B 39 375 375 HOH HOH . 
F 3 HOH B 40 378 378 HOH HOH . 
F 3 HOH B 41 383 383 HOH HOH . 
F 3 HOH B 42 386 386 HOH HOH . 
F 3 HOH B 43 390 390 HOH HOH . 
F 3 HOH B 44 391 391 HOH HOH . 
F 3 HOH B 45 392 392 HOH HOH . 
F 3 HOH B 46 394 394 HOH HOH . 
F 3 HOH B 47 395 395 HOH HOH . 
F 3 HOH B 48 397 397 HOH HOH . 
F 3 HOH B 49 398 398 HOH HOH . 
F 3 HOH B 50 400 400 HOH HOH . 
F 3 HOH B 51 401 401 HOH HOH . 
F 3 HOH B 52 404 404 HOH HOH . 
F 3 HOH B 53 406 406 HOH HOH . 
F 3 HOH B 54 409 409 HOH HOH . 
F 3 HOH B 55 416 416 HOH HOH . 
F 3 HOH B 56 417 417 HOH HOH . 
F 3 HOH B 57 420 420 HOH HOH . 
F 3 HOH B 58 421 421 HOH HOH . 
F 3 HOH B 59 423 423 HOH HOH . 
F 3 HOH B 60 428 428 HOH HOH . 
F 3 HOH B 61 430 430 HOH HOH . 
F 3 HOH B 62 432 432 HOH HOH . 
F 3 HOH B 63 434 434 HOH HOH . 
F 3 HOH B 64 436 436 HOH HOH . 
F 3 HOH B 65 438 438 HOH HOH . 
F 3 HOH B 66 445 445 HOH HOH . 
F 3 HOH B 67 446 446 HOH HOH . 
F 3 HOH B 68 447 447 HOH HOH . 
F 3 HOH B 69 448 448 HOH HOH . 
F 3 HOH B 70 455 455 HOH HOH . 
F 3 HOH B 71 457 457 HOH HOH . 
F 3 HOH B 72 458 458 HOH HOH . 
F 3 HOH B 73 459 459 HOH HOH . 
F 3 HOH B 74 466 466 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . D 2 22.451 10.939 29.175 1 40.16 ? N1 PLP 285 B 1 
HETATM 2 C C2 PLP . . . D 2 23.772 11.268 29.021 1 41.76 ? C2 PLP 285 B 1 
HETATM 3 C C2A PLP . . . D 2 24.2 12.026 27.777 1 41.67 ? C2A PLP 285 B 1 
HETATM 4 C C3 PLP . . . D 2 24.7 10.943 30.015 1 41.46 ? C3 PLP 285 B 1 
HETATM 5 O O3 PLP . . . D 2 26.042 11.184 29.808 1 44.41 ? O3 PLP 285 B 1 
HETATM 6 C C4 PLP . . . D 2 24.24 10.315 31.183 1 40.36 ? C4 PLP 285 B 1 
HETATM 7 C C4A PLP . . . D 2 25.073 9.955 32.271 1 39.86 ? C4A PLP 285 B 1 
HETATM 8 C C5 PLP . . . D 2 22.873 10.046 31.327 1 38.78 ? C5 PLP 285 B 1 
HETATM 9 C C6 PLP . . . D 2 22.004 10.341 30.313 1 40.14 ? C6 PLP 285 B 1 
HETATM 10 C C5A PLP . . . D 2 22.334 9.517 32.661 1 34.99 ? C5A PLP 285 B 1 
HETATM 11 O O4P PLP . . . D 2 21.831 8.194 32.764 1 28.76 ? O4P PLP 285 B 1 
HETATM 12 P P PLP . . . D 2 21.769 7.578 34.225 1 21.86 ? P PLP 285 B 1 
HETATM 13 O O1P PLP . . . D 2 22.408 8.477 35.209 1 25.23 ? O1P PLP 285 B 1 
HETATM 14 O O2P PLP . . . D 2 22.613 6.324 34.063 1 19.96 ? O2P PLP 285 B 1 
HETATM 15 O O3P PLP . . . D 2 20.388 7.127 34.403 1 23.98 ? O3P PLP 285 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           15 
#