data_2DBL # _model_server_result.job_id IukHop3To49iQDSA2E7rNA _model_server_result.datetime_utc '2025-03-04 04:41:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dbl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":212}' # _entry.id 2DBL # _exptl.entry_id 2DBL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.566 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-ALPHA-PREGNANE-3-BETA-OL-HEMISUCCINATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2DBL _cell.length_a 134.76 _cell.length_b 134.76 _cell.length_c 124.21 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DBL _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -67.38 116.705583 0 3 'crystal symmetry operation' 9_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 82.806667 4 'crystal symmetry operation' 12_565 x,x-y+1,-z+2/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -67.38 116.705583 82.806667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf2 A SG CYS 139 L CYS 134 1_555 A SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf4 B SG CYS 146 H CYS 142 1_555 B SG CYS 201 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C25 H38 O5' _chem_comp.formula_weight 418.566 _chem_comp.id S5H _chem_comp.mon_nstd_flag . _chem_comp.name 5-ALPHA-PREGNANE-3-BETA-OL-HEMISUCCINATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 S5H sing 275 n n C1 C10 S5H sing 276 n n C1 H11 S5H sing 277 n n C1 H12 S5H sing 278 n n C2 C3 S5H sing 279 n n C2 H21 S5H sing 280 n n C2 H22 S5H sing 281 n n C3 O3 S5H sing 282 n n C3 C4 S5H sing 283 n n C3 H3 S5H sing 284 n n O3 CH1 S5H sing 285 n n C4 C5 S5H sing 286 n n C4 H41 S5H sing 287 n n C4 H42 S5H sing 288 n n C5 C6 S5H sing 289 n n C5 C10 S5H sing 290 n n C5 H5 S5H sing 291 n n C6 C7 S5H sing 292 n n C6 H61 S5H sing 293 n n C6 H62 S5H sing 294 n n C7 C8 S5H sing 295 n n C7 H71 S5H sing 296 n n C7 H72 S5H sing 297 n n C8 C9 S5H sing 298 n n C8 C14 S5H sing 299 n n C8 H8 S5H sing 300 n n C9 C10 S5H sing 301 n n C9 C11 S5H sing 302 n n C9 H9 S5H sing 303 n n C10 C19 S5H sing 304 n n C11 C12 S5H sing 305 n n C11 H111 S5H sing 306 n n C11 H112 S5H sing 307 n n C12 C13 S5H sing 308 n n C12 H121 S5H sing 309 n n C12 H122 S5H sing 310 n n C13 C14 S5H sing 311 n n C13 C17 S5H sing 312 n n C13 C18 S5H sing 313 n n C14 C15 S5H sing 314 n n C14 H14 S5H sing 315 n n C15 C16 S5H sing 316 n n C15 H151 S5H sing 317 n n C15 H152 S5H sing 318 n n C16 C17 S5H sing 319 n n C16 H161 S5H sing 320 n n C16 H162 S5H sing 321 n n C17 C20 S5H sing 322 n n C17 H17 S5H sing 323 n n C18 H181 S5H sing 324 n n C18 H182 S5H sing 325 n n C18 H183 S5H sing 326 n n C19 H191 S5H sing 327 n n C19 H192 S5H sing 328 n n C19 H193 S5H sing 329 n n C20 O20 S5H doub 330 n n C20 C21 S5H sing 331 n n C21 H211 S5H sing 332 n n C21 H212 S5H sing 333 n n C21 H213 S5H sing 334 n n CH1 OH1 S5H doub 335 n n CH1 CH2 S5H sing 336 n n CH2 CH3 S5H sing 337 n n CH2 HH21 S5H sing 338 n n CH2 HH22 S5H sing 339 n n CH3 CH4 S5H sing 340 n n CH3 HH31 S5H sing 341 n n CH3 HH32 S5H sing 342 n n CH4 OH4 S5H doub 343 n n CH4 OH5 S5H sing 344 n n OH5 HOH5 S5H sing 345 n n # _atom_sites.entry_id 2DBL _atom_sites.fract_transf_matrix[1][1] 0.007421 _atom_sites.fract_transf_matrix[1][2] 0.004284 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id S5H _pdbx_nonpoly_scheme.pdb_strand_id L _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 212 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id S5H _pdbx_nonpoly_scheme.auth_mon_id S5H _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 S5H . . . C 3 -19.609 43.212 -15.092 1 22.88 ? C1 S5H 212 L 1 HETATM 2 C C2 S5H . . . C 3 -18.284 42.928 -15.878 1 25.71 ? C2 S5H 212 L 1 HETATM 3 C C3 S5H . . . C 3 -17.021 43.627 -15.323 1 28.6 ? C3 S5H 212 L 1 HETATM 4 O O3 S5H . . . C 3 -15.815 43.103 -15.9 1 33.19 ? O3 S5H 212 L 1 HETATM 5 C C4 S5H . . . C 3 -17.002 43.445 -13.769 1 27.41 ? C4 S5H 212 L 1 HETATM 6 C C5 S5H . . . C 3 -18.192 44.192 -13.182 1 22.91 ? C5 S5H 212 L 1 HETATM 7 C C6 S5H . . . C 3 -18.091 44.349 -11.699 1 23.36 ? C6 S5H 212 L 1 HETATM 8 C C7 S5H . . . C 3 -19.254 45.155 -11.15 1 23.61 ? C7 S5H 212 L 1 HETATM 9 C C8 S5H . . . C 3 -20.646 44.678 -11.608 1 20.96 ? C8 S5H 212 L 1 HETATM 10 C C9 S5H . . . C 3 -20.678 44.41 -13.13 1 20.62 ? C9 S5H 212 L 1 HETATM 11 C C10 S5H . . . C 3 -19.516 43.461 -13.527 1 22.85 ? C10 S5H 212 L 1 HETATM 12 C C11 S5H . . . C 3 -22.067 43.955 -13.565 1 19.1 ? C11 S5H 212 L 1 HETATM 13 C C12 S5H . . . C 3 -23.214 44.857 -13.021 1 18.76 ? C12 S5H 212 L 1 HETATM 14 C C13 S5H . . . C 3 -23.001 45.283 -11.545 1 19.89 ? C13 S5H 212 L 1 HETATM 15 C C14 S5H . . . C 3 -21.636 45.779 -11.353 1 20.49 ? C14 S5H 212 L 1 HETATM 16 C C15 S5H . . . C 3 -21.673 46.488 -10.012 1 19.07 ? C15 S5H 212 L 1 HETATM 17 C C16 S5H . . . C 3 -23.143 46.964 -9.859 1 19.1 ? C16 S5H 212 L 1 HETATM 18 C C17 S5H . . . C 3 -23.925 46.388 -11.062 1 19.61 ? C17 S5H 212 L 1 HETATM 19 C C18 S5H . . . C 3 -23.181 44.034 -10.679 1 20.03 ? C18 S5H 212 L 1 HETATM 20 C C19 S5H . . . C 3 -19.629 42.134 -12.75 1 20.96 ? C19 S5H 212 L 1 HETATM 21 C C20 S5H . . . C 3 -25.306 45.9 -10.71 1 21.71 ? C20 S5H 212 L 1 HETATM 22 O O20 S5H . . . C 3 -25.51 45.173 -9.751 1 22.18 ? O20 S5H 212 L 1 HETATM 23 C C21 S5H . . . C 3 -26.465 46.283 -11.554 1 22.02 ? C21 S5H 212 L 1 HETATM 24 C CH1 S5H . . . C 3 -15.785 42.304 -16.868 1 39.23 ? CH1 S5H 212 L 1 HETATM 25 O OH1 S5H . . . C 3 -16.125 42.633 -18.032 1 42.18 ? OH1 S5H 212 L 1 HETATM 26 C CH2 S5H . . . C 3 -15.248 40.889 -16.671 1 41.71 ? CH2 S5H 212 L 1 HETATM 27 C CH3 S5H . . . C 3 -13.745 40.859 -16.675 1 47.27 ? CH3 S5H 212 L 1 HETATM 28 C CH4 S5H . . . C 3 -13.196 41.47 -15.405 1 50.03 ? CH4 S5H 212 L 1 HETATM 29 O OH4 S5H . . . C 3 -13.972 41.428 -14.397 1 51.32 ? OH4 S5H 212 L 1 HETATM 30 O OH5 S5H . . . C 3 -12.022 41.983 -15.406 1 50.7 ? OH5 S5H 212 L 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 1424 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 30 #