data_2DBT # _model_server_result.job_id LrJ5MkU8yVOdGl0jsSb11A _model_server_result.datetime_utc '2024-10-20 20:40:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dbt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":295}' # _entry.id 2DBT # _exptl.entry_id 2DBT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2DBT _cell.length_a 153.116 _cell.length_b 153.116 _cell.length_c 90.031 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DBT _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 137 A CYS 166 1_555 A SG CYS 145 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 233 A CYS 262 1_555 A SG CYS 265 A CYS 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 B SG CYS 137 B CYS 166 1_555 B SG CYS 145 B CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 B SG CYS 233 B CYS 262 1_555 B SG CYS 265 B CYS 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 C SG CYS 137 C CYS 166 1_555 C SG CYS 145 C CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf6 C SG CYS 233 C CYS 262 1_555 C SG CYS 265 C CYS 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 2DBT _atom_sites.fract_transf_matrix[1][1] 0.006531 _atom_sites.fract_transf_matrix[1][2] 0.003771 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007541 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011107 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 EPE A 1 295 1 EPE EPE . E 2 EPE B 1 295 2 EPE EPE . F 2 EPE C 1 295 3 EPE EPE . G 3 HOH A 1 1 1 HOH HOH . G 3 HOH A 2 3 3 HOH HOH . G 3 HOH A 3 4 4 HOH HOH . G 3 HOH A 4 5 5 HOH HOH . G 3 HOH A 5 15 15 HOH HOH . G 3 HOH A 6 18 18 HOH HOH . G 3 HOH A 7 19 19 HOH HOH . G 3 HOH A 8 21 21 HOH HOH . H 3 HOH B 1 2 2 HOH HOH . H 3 HOH B 2 6 6 HOH HOH . H 3 HOH B 3 7 7 HOH HOH . H 3 HOH B 4 9 9 HOH HOH . H 3 HOH B 5 10 10 HOH HOH . H 3 HOH B 6 16 16 HOH HOH . I 3 HOH C 1 8 8 HOH HOH . I 3 HOH C 2 11 11 HOH HOH . I 3 HOH C 3 12 12 HOH HOH . I 3 HOH C 4 13 13 HOH HOH . I 3 HOH C 5 14 14 HOH HOH . I 3 HOH C 6 17 17 HOH HOH . I 3 HOH C 7 20 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . D 2 69.382 17.725 10.387 1 37.56 ? N1 EPE 295 A 1 HETATM 2 C C2 EPE . . . D 2 69.559 18.175 8.996 1 37.55 ? C2 EPE 295 A 1 HETATM 3 C C3 EPE . . . D 2 68.601 17.426 8.081 1 38.01 ? C3 EPE 295 A 1 HETATM 4 N N4 EPE . . . D 2 68.921 16.019 8.123 1 38.37 ? N4 EPE 295 A 1 HETATM 5 C C5 EPE . . . D 2 68.991 15.418 9.438 1 38.09 ? C5 EPE 295 A 1 HETATM 6 C C6 EPE . . . D 2 69.66 16.287 10.506 1 37.78 ? C6 EPE 295 A 1 HETATM 7 C C7 EPE . . . D 2 68.467 15.2 7.011 1 40.17 ? C7 EPE 295 A 1 HETATM 8 C C8 EPE . . . D 2 69.538 14.317 6.373 1 41.9 ? C8 EPE 295 A 1 HETATM 9 O O8 EPE . . . D 2 69.483 13.036 6.981 1 43.39 ? O8 EPE 295 A 1 HETATM 10 C C9 EPE . . . D 2 70.381 18.431 11.212 1 38 ? C9 EPE 295 A 1 HETATM 11 C C10 EPE . . . D 2 69.766 19.315 12.302 1 38.98 ? C10 EPE 295 A 1 HETATM 12 S S EPE . . . D 2 68.551 20.537 11.738 1 39.12 ? S EPE 295 A 1 HETATM 13 O O1S EPE . . . D 2 68.299 21.537 12.767 1 39.96 ? O1S EPE 295 A 1 HETATM 14 O O2S EPE . . . D 2 67.304 19.851 11.392 1 38.91 ? O2S EPE 295 A 1 HETATM 15 O O3S EPE . . . D 2 69.057 21.247 10.579 1 39.01 ? O3S EPE 295 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #