data_2DC6 # _model_server_result.job_id laeRwlpoulE2waiXeyQkcA _model_server_result.datetime_utc '2025-04-04 04:18:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dc6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":730}' # _entry.id 2DC6 # _exptl.entry_id 2DC6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 473.562 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BENZYL N-({(2S,3S)-3-[(PROPYLAMINO)CARBONYL]OXIRAN-2-YL}CARBONYL)-L-ISOLEUCYL-L-PROLINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DC6 _cell.length_a 72.14 _cell.length_b 72.14 _cell.length_c 139.67 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DC6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 A SG CYS 43 A CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 26 A CYS 26 1_555 A SG CYS 71 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 62 A CYS 62 1_555 A SG CYS 128 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 63 A CYS 63 1_555 A SG CYS 67 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 A SG CYS 100 A CYS 100 1_555 A SG CYS 132 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 108 A CYS 108 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 A SG CYS 148 A CYS 148 1_555 A SG CYS 252 A CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A SG CYS 29 A CYS 29 1_555 C C2 73V . A 73V 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? # _chem_comp.formula 'C25 H35 N3 O6' _chem_comp.formula_weight 473.562 _chem_comp.id 73V _chem_comp.mon_nstd_flag . _chem_comp.name 'BENZYL N-({(2S,3S)-3-[(PROPYLAMINO)CARBONYL]OXIRAN-2-YL}CARBONYL)-L-ISOLEUCYL-L-PROLINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CA073;N-(L-3-TRANS-PROPYLCARBAMOYLOXIRANE-2-CARBONYL)-L-ISOLEUCYL-L-PROLINE BENZYL ESTER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C18 73V sing 1 n n C19 H191 73V sing 2 n n C19 H192 73V sing 3 n n C19 H193 73V sing 4 n n C18 C17 73V sing 5 n n C18 H181 73V sing 6 n n C18 H182 73V sing 7 n n C17 N3 73V sing 8 n n C17 H171 73V sing 9 n n C17 H172 73V sing 10 n n N3 C16 73V sing 11 n n N3 HN3 73V sing 12 n n C10 C15 73V sing 13 n y C10 C11 73V doub 14 n y C10 C9 73V sing 15 n n C15 C14 73V doub 16 n y C15 H15 73V sing 17 n n C14 C13 73V sing 18 n y C14 H14 73V sing 19 n n C13 C12 73V doub 20 n y C13 H13 73V sing 21 n n C12 C11 73V sing 22 n y C12 H12 73V sing 23 n n C11 H11 73V sing 24 n n C9 O7 73V sing 25 n n C9 H91 73V sing 26 n n C9 H92 73V sing 27 n n O1 C3 73V sing 28 n n O1 C2 73V sing 29 n n C3 C4 73V sing 30 n n C3 C2 73V sing 31 n n C3 H3 73V sing 32 n n C4 O4 73V doub 33 n n C4 N1 73V sing 34 n n C2 C16 73V sing 35 n n C2 H2 73V sing 36 n n C16 O2 73V doub 37 n n N1 C5 73V sing 38 n n N1 HN1 73V sing 39 n n C5 C6 73V sing 40 n n C5 C20 73V sing 41 n n C5 H5 73V sing 42 n n C6 O5 73V doub 43 n n C6 N2 73V sing 44 n n C20 C22 73V sing 45 n n C20 C21 73V sing 46 n n C20 H20 73V sing 47 n n C22 C23 73V sing 48 n n C22 H221 73V sing 49 n n C22 H222 73V sing 50 n n C21 H211 73V sing 51 n n C21 H212 73V sing 52 n n C21 H213 73V sing 53 n n C23 H231 73V sing 54 n n C23 H232 73V sing 55 n n C23 H233 73V sing 56 n n N2 C7 73V sing 57 n n N2 C24 73V sing 58 n n C7 C8 73V sing 59 n n C7 C26 73V sing 60 n n C7 H7 73V sing 61 n n C8 O7 73V sing 62 n n C8 O6 73V doub 63 n n C26 C25 73V sing 64 n n C26 H261 73V sing 65 n n C26 H262 73V sing 66 n n C25 C24 73V sing 67 n n C25 H251 73V sing 68 n n C25 H252 73V sing 69 n n C24 H241 73V sing 70 n n C24 H242 73V sing 71 n n # _atom_sites.entry_id 2DC6 _atom_sites.fract_transf_matrix[1][1] 0.013862 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 801 801 PO4 PO4 . C 3 73V A 1 730 730 73V 73V . D 4 GOL A 1 500 500 GOL GOL . E 5 HOH A 1 802 1 HOH WAT . E 5 HOH A 2 803 2 HOH WAT . E 5 HOH A 3 804 3 HOH WAT . E 5 HOH A 4 805 4 HOH WAT . E 5 HOH A 5 806 5 HOH WAT . E 5 HOH A 6 807 6 HOH WAT . E 5 HOH A 7 808 8 HOH WAT . E 5 HOH A 8 809 9 HOH WAT . E 5 HOH A 9 810 10 HOH WAT . E 5 HOH A 10 811 11 HOH WAT . E 5 HOH A 11 812 12 HOH WAT . E 5 HOH A 12 813 14 HOH WAT . E 5 HOH A 13 814 15 HOH WAT . E 5 HOH A 14 815 16 HOH WAT . E 5 HOH A 15 816 17 HOH WAT . E 5 HOH A 16 817 19 HOH WAT . E 5 HOH A 17 818 20 HOH WAT . E 5 HOH A 18 819 21 HOH WAT . E 5 HOH A 19 820 23 HOH WAT . E 5 HOH A 20 821 25 HOH WAT . E 5 HOH A 21 822 26 HOH WAT . E 5 HOH A 22 823 27 HOH WAT . E 5 HOH A 23 824 28 HOH WAT . E 5 HOH A 24 825 32 HOH WAT . E 5 HOH A 25 826 34 HOH WAT . E 5 HOH A 26 827 35 HOH WAT . E 5 HOH A 27 828 36 HOH WAT . E 5 HOH A 28 829 38 HOH WAT . E 5 HOH A 29 830 39 HOH WAT . E 5 HOH A 30 831 42 HOH WAT . E 5 HOH A 31 832 43 HOH WAT . E 5 HOH A 32 833 44 HOH WAT . E 5 HOH A 33 834 45 HOH WAT . E 5 HOH A 34 835 46 HOH WAT . E 5 HOH A 35 836 47 HOH WAT . E 5 HOH A 36 837 48 HOH WAT . E 5 HOH A 37 838 49 HOH WAT . E 5 HOH A 38 839 50 HOH WAT . E 5 HOH A 39 840 51 HOH WAT . E 5 HOH A 40 841 52 HOH WAT . E 5 HOH A 41 842 54 HOH WAT . E 5 HOH A 42 843 55 HOH WAT . E 5 HOH A 43 844 57 HOH WAT . E 5 HOH A 44 845 59 HOH WAT . E 5 HOH A 45 846 61 HOH WAT . E 5 HOH A 46 847 62 HOH WAT . E 5 HOH A 47 848 65 HOH WAT . E 5 HOH A 48 849 66 HOH WAT . E 5 HOH A 49 850 67 HOH WAT . E 5 HOH A 50 851 68 HOH WAT . E 5 HOH A 51 852 69 HOH WAT . E 5 HOH A 52 853 73 HOH WAT . E 5 HOH A 53 854 76 HOH WAT . E 5 HOH A 54 855 77 HOH WAT . E 5 HOH A 55 856 78 HOH WAT . E 5 HOH A 56 857 79 HOH WAT . E 5 HOH A 57 858 80 HOH WAT . E 5 HOH A 58 859 81 HOH WAT . E 5 HOH A 59 860 84 HOH WAT . E 5 HOH A 60 861 86 HOH WAT . E 5 HOH A 61 862 88 HOH WAT . E 5 HOH A 62 863 89 HOH WAT . E 5 HOH A 63 864 91 HOH WAT . E 5 HOH A 64 865 96 HOH WAT . E 5 HOH A 65 866 103 HOH WAT . E 5 HOH A 66 867 104 HOH WAT . E 5 HOH A 67 868 105 HOH WAT . E 5 HOH A 68 869 106 HOH WAT . E 5 HOH A 69 870 107 HOH WAT . E 5 HOH A 70 871 110 HOH WAT . E 5 HOH A 71 872 114 HOH WAT . E 5 HOH A 72 873 115 HOH WAT . E 5 HOH A 73 874 116 HOH WAT . E 5 HOH A 74 875 121 HOH WAT . E 5 HOH A 75 876 122 HOH WAT . E 5 HOH A 76 877 123 HOH WAT . E 5 HOH A 77 878 128 HOH WAT . E 5 HOH A 78 879 129 HOH WAT . E 5 HOH A 79 880 130 HOH WAT . E 5 HOH A 80 881 132 HOH WAT . E 5 HOH A 81 882 134 HOH WAT . E 5 HOH A 82 883 135 HOH WAT . E 5 HOH A 83 884 136 HOH WAT . E 5 HOH A 84 885 137 HOH WAT . E 5 HOH A 85 886 139 HOH WAT . E 5 HOH A 86 887 140 HOH WAT . E 5 HOH A 87 888 143 HOH WAT . E 5 HOH A 88 889 153 HOH WAT . E 5 HOH A 89 890 156 HOH WAT . E 5 HOH A 90 891 160 HOH WAT . E 5 HOH A 91 892 161 HOH WAT . E 5 HOH A 92 893 162 HOH WAT . E 5 HOH A 93 894 165 HOH WAT . E 5 HOH A 94 895 166 HOH WAT . E 5 HOH A 95 896 169 HOH WAT . E 5 HOH A 96 897 171 HOH WAT . E 5 HOH A 97 898 172 HOH WAT . E 5 HOH A 98 899 173 HOH WAT . E 5 HOH A 99 900 175 HOH WAT . E 5 HOH A 100 901 176 HOH WAT . E 5 HOH A 101 902 180 HOH WAT . E 5 HOH A 102 903 183 HOH WAT . E 5 HOH A 103 904 185 HOH WAT . E 5 HOH A 104 905 187 HOH WAT . E 5 HOH A 105 906 188 HOH WAT . E 5 HOH A 106 907 189 HOH WAT . E 5 HOH A 107 908 191 HOH WAT . E 5 HOH A 108 909 192 HOH WAT . E 5 HOH A 109 910 193 HOH WAT . E 5 HOH A 110 911 194 HOH WAT . E 5 HOH A 111 912 195 HOH WAT . E 5 HOH A 112 913 196 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C19 73V . . . C 3 7.605 19.421 -4.619 1 26.4 ? C19 73V 730 A 1 HETATM 2 C C18 73V . . . C 3 7.303 18.81 -5.999 1 28.87 ? C18 73V 730 A 1 HETATM 3 C C17 73V . . . C 3 8.054 19.493 -7.179 1 28.77 ? C17 73V 730 A 1 HETATM 4 N N3 73V . . . C 3 9.533 19.539 -6.917 1 28.29 ? N3 73V 730 A 1 HETATM 5 C C10 73V . . . C 3 18.997 15.105 -0.991 1 34.37 ? C10 73V 730 A 1 HETATM 6 C C15 73V . . . C 3 20.164 14.594 -1.688 1 34.29 ? C15 73V 730 A 1 HETATM 7 C C14 73V . . . C 3 21.447 15.214 -1.515 1 33.94 ? C14 73V 730 A 1 HETATM 8 C C13 73V . . . C 3 21.579 16.354 -0.643 1 34.9 ? C13 73V 730 A 1 HETATM 9 C C12 73V . . . C 3 20.424 16.87 0.054 1 35.25 ? C12 73V 730 A 1 HETATM 10 C C11 73V . . . C 3 19.139 16.247 -0.12 1 33.81 ? C11 73V 730 A 1 HETATM 11 C C9 73V . . . C 3 17.628 14.452 -1.171 1 33.69 ? C9 73V 730 A 1 HETATM 12 O O1 73V . . . C 3 11.995 17.336 -6.94 1 21.67 ? O1 73V 730 A 1 HETATM 13 C C3 73V . . . C 3 12.721 18.372 -7.62 1 23.38 ? C3 73V 730 A 1 HETATM 14 C C4 73V . . . C 3 14.193 18.425 -7.13 1 24.8 ? C4 73V 730 A 1 HETATM 15 O O4 73V . . . C 3 15.071 18.766 -7.929 1 23.65 ? O4 73V 730 A 1 HETATM 16 C C2 73V . . . C 3 11.947 19.687 -7.38 1 24.45 ? C2 73V 730 A 1 HETATM 17 C C16 73V . . . C 3 10.491 19.659 -7.87 1 26.04 ? C16 73V 730 A 1 HETATM 18 O O2 73V . . . C 3 10.277 19.746 -9.086 1 23.5 ? O2 73V 730 A 1 HETATM 19 N N1 73V . . . C 3 14.447 18.096 -5.837 1 25.56 ? N1 73V 730 A 1 HETATM 20 C C5 73V . . . C 3 15.785 17.66 -5.306 1 28.01 ? C5 73V 730 A 1 HETATM 21 C C6 73V . . . C 3 15.649 16.131 -4.857 1 30.4 ? C6 73V 730 A 1 HETATM 22 O O5 73V . . . C 3 14.659 15.856 -4.148 1 33.43 ? O5 73V 730 A 1 HETATM 23 C C20 73V . . . C 3 16.219 18.603 -4.092 1 27.57 ? C20 73V 730 A 1 HETATM 24 C C22 73V . . . C 3 16.36 20.102 -4.492 1 27.65 ? C22 73V 730 A 1 HETATM 25 C C21 73V . . . C 3 17.608 18.189 -3.486 1 28.84 ? C21 73V 730 A 1 HETATM 26 C C23 73V . . . C 3 15.389 21.049 -3.797 1 28.08 ? C23 73V 730 A 1 HETATM 27 N N2 73V . . . C 3 16.547 15.094 -5.19 1 31.86 ? N2 73V 730 A 1 HETATM 28 C C7 73V . . . C 3 16.378 13.678 -4.735 1 33.12 ? C7 73V 730 A 1 HETATM 29 C C8 73V . . . C 3 16.757 13.373 -3.234 1 35.91 ? C8 73V 730 A 1 HETATM 30 O O7 73V . . . C 3 17.219 14.514 -2.56 1 36.05 ? O7 73V 730 A 1 HETATM 31 O O6 73V . . . C 3 16.645 12.239 -2.754 1 40.1 ? O6 73V 730 A 1 HETATM 32 C C26 73V . . . C 3 17.229 12.933 -5.772 1 32.48 ? C26 73V 730 A 1 HETATM 33 C C25 73V . . . C 3 18.387 13.89 -6.103 1 32.08 ? C25 73V 730 A 1 HETATM 34 C C24 73V . . . C 3 17.766 15.287 -6.028 1 31.28 ? C24 73V 730 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #