data_2DC6
#
_model_server_result.job_id            736tuM0f5k2qnqy0xA8Zrg 
_model_server_result.datetime_utc      '2025-04-10 04:09:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2dc6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":801}' 
#
_entry.id    2DC6 
#
_exptl.entry_id    2DC6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2DC6 
_cell.length_a            72.14 
_cell.length_b            72.14 
_cell.length_c            139.67 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2DC6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 A SG CYS 43 A CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 26 A CYS 26 1_555 A SG CYS 71 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 62 A CYS 62 1_555 A SG CYS 128 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 A SG CYS 63 A CYS 63 1_555 A SG CYS 67 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf5 A SG CYS 100 A CYS 100 1_555 A SG CYS 132 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 A SG CYS 108 A CYS 108 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf7 A SG CYS 148 A CYS 148 1_555 A SG CYS 252 A CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
covale ? covale1 A SG CYS 29 A CYS 29 1_555 C C2 73V . A 73V 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 344 n n 
P O2 PO4 sing 345 n n 
P O3 PO4 sing 346 n n 
P O4 PO4 sing 347 n n 
#
_atom_sites.entry_id                     2DC6 
_atom_sites.fract_transf_matrix[1][1]    0.013862 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013862 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00716 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 801 801 PO4 PO4 . 
C 3 73V A 1 730 730 73V 73V . 
D 4 GOL A 1 500 500 GOL GOL . 
E 5 HOH A 1 802 1 HOH WAT . 
E 5 HOH A 2 803 2 HOH WAT . 
E 5 HOH A 3 804 3 HOH WAT . 
E 5 HOH A 4 805 4 HOH WAT . 
E 5 HOH A 5 806 5 HOH WAT . 
E 5 HOH A 6 807 6 HOH WAT . 
E 5 HOH A 7 808 8 HOH WAT . 
E 5 HOH A 8 809 9 HOH WAT . 
E 5 HOH A 9 810 10 HOH WAT . 
E 5 HOH A 10 811 11 HOH WAT . 
E 5 HOH A 11 812 12 HOH WAT . 
E 5 HOH A 12 813 14 HOH WAT . 
E 5 HOH A 13 814 15 HOH WAT . 
E 5 HOH A 14 815 16 HOH WAT . 
E 5 HOH A 15 816 17 HOH WAT . 
E 5 HOH A 16 817 19 HOH WAT . 
E 5 HOH A 17 818 20 HOH WAT . 
E 5 HOH A 18 819 21 HOH WAT . 
E 5 HOH A 19 820 23 HOH WAT . 
E 5 HOH A 20 821 25 HOH WAT . 
E 5 HOH A 21 822 26 HOH WAT . 
E 5 HOH A 22 823 27 HOH WAT . 
E 5 HOH A 23 824 28 HOH WAT . 
E 5 HOH A 24 825 32 HOH WAT . 
E 5 HOH A 25 826 34 HOH WAT . 
E 5 HOH A 26 827 35 HOH WAT . 
E 5 HOH A 27 828 36 HOH WAT . 
E 5 HOH A 28 829 38 HOH WAT . 
E 5 HOH A 29 830 39 HOH WAT . 
E 5 HOH A 30 831 42 HOH WAT . 
E 5 HOH A 31 832 43 HOH WAT . 
E 5 HOH A 32 833 44 HOH WAT . 
E 5 HOH A 33 834 45 HOH WAT . 
E 5 HOH A 34 835 46 HOH WAT . 
E 5 HOH A 35 836 47 HOH WAT . 
E 5 HOH A 36 837 48 HOH WAT . 
E 5 HOH A 37 838 49 HOH WAT . 
E 5 HOH A 38 839 50 HOH WAT . 
E 5 HOH A 39 840 51 HOH WAT . 
E 5 HOH A 40 841 52 HOH WAT . 
E 5 HOH A 41 842 54 HOH WAT . 
E 5 HOH A 42 843 55 HOH WAT . 
E 5 HOH A 43 844 57 HOH WAT . 
E 5 HOH A 44 845 59 HOH WAT . 
E 5 HOH A 45 846 61 HOH WAT . 
E 5 HOH A 46 847 62 HOH WAT . 
E 5 HOH A 47 848 65 HOH WAT . 
E 5 HOH A 48 849 66 HOH WAT . 
E 5 HOH A 49 850 67 HOH WAT . 
E 5 HOH A 50 851 68 HOH WAT . 
E 5 HOH A 51 852 69 HOH WAT . 
E 5 HOH A 52 853 73 HOH WAT . 
E 5 HOH A 53 854 76 HOH WAT . 
E 5 HOH A 54 855 77 HOH WAT . 
E 5 HOH A 55 856 78 HOH WAT . 
E 5 HOH A 56 857 79 HOH WAT . 
E 5 HOH A 57 858 80 HOH WAT . 
E 5 HOH A 58 859 81 HOH WAT . 
E 5 HOH A 59 860 84 HOH WAT . 
E 5 HOH A 60 861 86 HOH WAT . 
E 5 HOH A 61 862 88 HOH WAT . 
E 5 HOH A 62 863 89 HOH WAT . 
E 5 HOH A 63 864 91 HOH WAT . 
E 5 HOH A 64 865 96 HOH WAT . 
E 5 HOH A 65 866 103 HOH WAT . 
E 5 HOH A 66 867 104 HOH WAT . 
E 5 HOH A 67 868 105 HOH WAT . 
E 5 HOH A 68 869 106 HOH WAT . 
E 5 HOH A 69 870 107 HOH WAT . 
E 5 HOH A 70 871 110 HOH WAT . 
E 5 HOH A 71 872 114 HOH WAT . 
E 5 HOH A 72 873 115 HOH WAT . 
E 5 HOH A 73 874 116 HOH WAT . 
E 5 HOH A 74 875 121 HOH WAT . 
E 5 HOH A 75 876 122 HOH WAT . 
E 5 HOH A 76 877 123 HOH WAT . 
E 5 HOH A 77 878 128 HOH WAT . 
E 5 HOH A 78 879 129 HOH WAT . 
E 5 HOH A 79 880 130 HOH WAT . 
E 5 HOH A 80 881 132 HOH WAT . 
E 5 HOH A 81 882 134 HOH WAT . 
E 5 HOH A 82 883 135 HOH WAT . 
E 5 HOH A 83 884 136 HOH WAT . 
E 5 HOH A 84 885 137 HOH WAT . 
E 5 HOH A 85 886 139 HOH WAT . 
E 5 HOH A 86 887 140 HOH WAT . 
E 5 HOH A 87 888 143 HOH WAT . 
E 5 HOH A 88 889 153 HOH WAT . 
E 5 HOH A 89 890 156 HOH WAT . 
E 5 HOH A 90 891 160 HOH WAT . 
E 5 HOH A 91 892 161 HOH WAT . 
E 5 HOH A 92 893 162 HOH WAT . 
E 5 HOH A 93 894 165 HOH WAT . 
E 5 HOH A 94 895 166 HOH WAT . 
E 5 HOH A 95 896 169 HOH WAT . 
E 5 HOH A 96 897 171 HOH WAT . 
E 5 HOH A 97 898 172 HOH WAT . 
E 5 HOH A 98 899 173 HOH WAT . 
E 5 HOH A 99 900 175 HOH WAT . 
E 5 HOH A 100 901 176 HOH WAT . 
E 5 HOH A 101 902 180 HOH WAT . 
E 5 HOH A 102 903 183 HOH WAT . 
E 5 HOH A 103 904 185 HOH WAT . 
E 5 HOH A 104 905 187 HOH WAT . 
E 5 HOH A 105 906 188 HOH WAT . 
E 5 HOH A 106 907 189 HOH WAT . 
E 5 HOH A 107 908 191 HOH WAT . 
E 5 HOH A 108 909 192 HOH WAT . 
E 5 HOH A 109 910 193 HOH WAT . 
E 5 HOH A 110 911 194 HOH WAT . 
E 5 HOH A 111 912 195 HOH WAT . 
E 5 HOH A 112 913 196 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . B 2 16.967 50.713 -2.501 1 47.83 ? P PO4 801 A 1 
HETATM 2 O O1 PO4 . . . B 2 18.385 50.948 -2.891 1 46.58 ? O1 PO4 801 A 1 
HETATM 3 O O2 PO4 . . . B 2 16.706 51.34 -1.177 1 47.46 ? O2 PO4 801 A 1 
HETATM 4 O O3 PO4 . . . B 2 16.059 51.314 -3.518 1 46.01 ? O3 PO4 801 A 1 
HETATM 5 O O4 PO4 . . . B 2 16.717 49.251 -2.416 1 46.13 ? O4 PO4 801 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#