data_2DCD
#
_model_server_result.job_id            8YsCFUuSEnygmtDIrWN4Iw 
_model_server_result.datetime_utc      '2025-01-03 00:27:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2dcd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":780}' 
#
_entry.id    2DCD 
#
_exptl.entry_id    2DCD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              431.482 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-({(2S,3S)-3-[(BENZYLAMINO)CARBONYL]OXIRAN-2-YL}CARBONYL)-L-ISOLEUCYL-L-PROLINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2DCD 
_cell.length_a            72.26 
_cell.length_b            72.26 
_cell.length_c            140 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2DCD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 A SG CYS 43 A CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 26 A CYS 26 1_555 A SG CYS 71 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 62 A CYS 62 1_555 A SG CYS 128 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 A SG CYS 63 A CYS 63 1_555 A SG CYS 67 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf5 A SG CYS 100 A CYS 100 1_555 A SG CYS 132 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 A SG CYS 108 A CYS 108 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 A SG CYS 148 A CYS 148 1_555 A SG CYS 252 A CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
covale ? covale1 A SG CYS 29 A CYS 29 1_555 C C3 78A . A 78A 780 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? 
#
_chem_comp.formula           'C22 H29 N3 O6' 
_chem_comp.formula_weight    431.482 
_chem_comp.id                78A 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-({(2S,3S)-3-[(BENZYLAMINO)CARBONYL]OXIRAN-2-YL}CARBONYL)-L-ISOLEUCYL-L-PROLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     CA078;N-(L-3-TRANS-BENZYLCARBAMOYLOXIRANE-2-CARBONYL)-L-ISOLEUCYL-L-PROLINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3 C10 78A sing 1 n n 
N3 C9 78A sing 2 n n 
N3 HN3 78A sing 3 n n 
C10 C11 78A sing 4 n n 
C10 H101 78A sing 5 n n 
C10 H102 78A sing 6 n n 
C11 C16 78A sing 7 n y 
C11 C12 78A doub 8 n y 
C16 C15 78A doub 9 n y 
C16 H16 78A sing 10 n n 
C15 C14 78A sing 11 n y 
C15 H15 78A sing 12 n n 
C14 C13 78A doub 13 n y 
C14 H14 78A sing 14 n n 
C13 C12 78A sing 15 n y 
C13 H13 78A sing 16 n n 
C12 H12 78A sing 17 n n 
C2 O1 78A sing 18 n n 
C2 C3 78A sing 19 n n 
C2 C9 78A sing 20 n n 
C2 H2 78A sing 21 n n 
O1 C3 78A sing 22 n n 
C3 C4 78A sing 23 n n 
C3 H3 78A sing 24 n n 
C4 O4 78A doub 25 n n 
C4 N1 78A sing 26 n n 
N1 C5 78A sing 27 n n 
N1 HN1 78A sing 28 n n 
C5 C6 78A sing 29 n n 
C5 C17 78A sing 30 n n 
C5 H5 78A sing 31 n n 
C6 O5 78A doub 32 n n 
C6 N2 78A sing 33 n n 
C17 C19 78A sing 34 n n 
C17 C18 78A sing 35 n n 
C17 H17 78A sing 36 n n 
C19 C20 78A sing 37 n n 
C19 H191 78A sing 38 n n 
C19 H192 78A sing 39 n n 
C18 H181 78A sing 40 n n 
C18 H182 78A sing 41 n n 
C18 H183 78A sing 42 n n 
C20 H201 78A sing 43 n n 
C20 H202 78A sing 44 n n 
C20 H203 78A sing 45 n n 
N2 C7 78A sing 46 n n 
N2 C21 78A sing 47 n n 
C7 C8 78A sing 48 n n 
C7 C23 78A sing 49 n n 
C7 H7 78A sing 50 n n 
C8 O6 78A sing 51 n n 
C8 O7 78A doub 52 n n 
O6 HO6 78A sing 53 n n 
C23 C22 78A sing 54 n n 
C23 H231 78A sing 55 n n 
C23 H232 78A sing 56 n n 
C22 C21 78A sing 57 n n 
C22 H221 78A sing 58 n n 
C22 H222 78A sing 59 n n 
C21 H211 78A sing 60 n n 
C21 H212 78A sing 61 n n 
C9 O2 78A doub 62 n n 
#
_atom_sites.entry_id                     2DCD 
_atom_sites.fract_transf_matrix[1][1]    0.013839 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013839 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007143 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 801 801 PO4 PO4 . 
C 3 78A A 1 780 780 78A 78A . 
D 4 GOL A 1 500 500 GOL GOL . 
E 5 HOH A 1 802 1 HOH WAT . 
E 5 HOH A 2 803 2 HOH WAT . 
E 5 HOH A 3 804 3 HOH WAT . 
E 5 HOH A 4 805 4 HOH WAT . 
E 5 HOH A 5 806 5 HOH WAT . 
E 5 HOH A 6 807 7 HOH WAT . 
E 5 HOH A 7 808 8 HOH WAT . 
E 5 HOH A 8 809 9 HOH WAT . 
E 5 HOH A 9 810 10 HOH WAT . 
E 5 HOH A 10 811 12 HOH WAT . 
E 5 HOH A 11 812 14 HOH WAT . 
E 5 HOH A 12 813 16 HOH WAT . 
E 5 HOH A 13 814 17 HOH WAT . 
E 5 HOH A 14 815 19 HOH WAT . 
E 5 HOH A 15 816 20 HOH WAT . 
E 5 HOH A 16 817 21 HOH WAT . 
E 5 HOH A 17 818 22 HOH WAT . 
E 5 HOH A 18 819 24 HOH WAT . 
E 5 HOH A 19 820 25 HOH WAT . 
E 5 HOH A 20 821 26 HOH WAT . 
E 5 HOH A 21 822 27 HOH WAT . 
E 5 HOH A 22 823 28 HOH WAT . 
E 5 HOH A 23 824 29 HOH WAT . 
E 5 HOH A 24 825 30 HOH WAT . 
E 5 HOH A 25 826 31 HOH WAT . 
E 5 HOH A 26 827 32 HOH WAT . 
E 5 HOH A 27 828 33 HOH WAT . 
E 5 HOH A 28 829 35 HOH WAT . 
E 5 HOH A 29 830 36 HOH WAT . 
E 5 HOH A 30 831 37 HOH WAT . 
E 5 HOH A 31 832 40 HOH WAT . 
E 5 HOH A 32 833 41 HOH WAT . 
E 5 HOH A 33 834 42 HOH WAT . 
E 5 HOH A 34 835 44 HOH WAT . 
E 5 HOH A 35 836 46 HOH WAT . 
E 5 HOH A 36 837 47 HOH WAT . 
E 5 HOH A 37 838 49 HOH WAT . 
E 5 HOH A 38 839 51 HOH WAT . 
E 5 HOH A 39 840 52 HOH WAT . 
E 5 HOH A 40 841 53 HOH WAT . 
E 5 HOH A 41 842 54 HOH WAT . 
E 5 HOH A 42 843 55 HOH WAT . 
E 5 HOH A 43 844 56 HOH WAT . 
E 5 HOH A 44 845 57 HOH WAT . 
E 5 HOH A 45 846 58 HOH WAT . 
E 5 HOH A 46 847 60 HOH WAT . 
E 5 HOH A 47 848 61 HOH WAT . 
E 5 HOH A 48 849 63 HOH WAT . 
E 5 HOH A 49 850 65 HOH WAT . 
E 5 HOH A 50 851 66 HOH WAT . 
E 5 HOH A 51 852 67 HOH WAT . 
E 5 HOH A 52 853 70 HOH WAT . 
E 5 HOH A 53 854 71 HOH WAT . 
E 5 HOH A 54 855 72 HOH WAT . 
E 5 HOH A 55 856 73 HOH WAT . 
E 5 HOH A 56 857 74 HOH WAT . 
E 5 HOH A 57 858 75 HOH WAT . 
E 5 HOH A 58 859 77 HOH WAT . 
E 5 HOH A 59 860 78 HOH WAT . 
E 5 HOH A 60 861 79 HOH WAT . 
E 5 HOH A 61 862 80 HOH WAT . 
E 5 HOH A 62 863 82 HOH WAT . 
E 5 HOH A 63 864 86 HOH WAT . 
E 5 HOH A 64 865 87 HOH WAT . 
E 5 HOH A 65 866 88 HOH WAT . 
E 5 HOH A 66 867 89 HOH WAT . 
E 5 HOH A 67 868 90 HOH WAT . 
E 5 HOH A 68 869 91 HOH WAT . 
E 5 HOH A 69 870 93 HOH WAT . 
E 5 HOH A 70 871 94 HOH WAT . 
E 5 HOH A 71 872 96 HOH WAT . 
E 5 HOH A 72 873 97 HOH WAT . 
E 5 HOH A 73 874 98 HOH WAT . 
E 5 HOH A 74 875 99 HOH WAT . 
E 5 HOH A 75 876 100 HOH WAT . 
E 5 HOH A 76 877 103 HOH WAT . 
E 5 HOH A 77 878 104 HOH WAT . 
E 5 HOH A 78 879 105 HOH WAT . 
E 5 HOH A 79 880 107 HOH WAT . 
E 5 HOH A 80 881 110 HOH WAT . 
E 5 HOH A 81 882 111 HOH WAT . 
E 5 HOH A 82 883 113 HOH WAT . 
E 5 HOH A 83 884 114 HOH WAT . 
E 5 HOH A 84 885 115 HOH WAT . 
E 5 HOH A 85 886 116 HOH WAT . 
E 5 HOH A 86 887 117 HOH WAT . 
E 5 HOH A 87 888 118 HOH WAT . 
E 5 HOH A 88 889 119 HOH WAT . 
E 5 HOH A 89 890 120 HOH WAT . 
E 5 HOH A 90 891 121 HOH WAT . 
E 5 HOH A 91 892 122 HOH WAT . 
E 5 HOH A 92 893 123 HOH WAT . 
E 5 HOH A 93 894 124 HOH WAT . 
E 5 HOH A 94 895 125 HOH WAT . 
E 5 HOH A 95 896 126 HOH WAT . 
E 5 HOH A 96 897 127 HOH WAT . 
E 5 HOH A 97 898 128 HOH WAT . 
E 5 HOH A 98 899 129 HOH WAT . 
E 5 HOH A 99 900 130 HOH WAT . 
E 5 HOH A 100 901 131 HOH WAT . 
E 5 HOH A 101 902 132 HOH WAT . 
E 5 HOH A 102 903 133 HOH WAT . 
E 5 HOH A 103 904 134 HOH WAT . 
E 5 HOH A 104 905 135 HOH WAT . 
E 5 HOH A 105 906 136 HOH WAT . 
E 5 HOH A 106 907 137 HOH WAT . 
E 5 HOH A 107 908 138 HOH WAT . 
E 5 HOH A 108 909 139 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3 78A . . . C 3 14.155 17.815 -5.902 1 33.87 ? N3 78A 780 A 1 
HETATM 2 C C10 78A . . . C 3 15.487 17.556 -5.313 1 37.29 ? C10 78A 780 A 1 
HETATM 3 C C11 78A . . . C 3 15.998 18.691 -4.427 1 39.71 ? C11 78A 780 A 1 
HETATM 4 C C16 78A . . . C 3 15.087 19.627 -3.859 1 39.92 ? C16 78A 780 A 1 
HETATM 5 C C15 78A . . . C 3 15.563 20.676 -3.039 1 41.71 ? C15 78A 780 A 1 
HETATM 6 C C14 78A . . . C 3 16.949 20.793 -2.784 1 42.77 ? C14 78A 780 A 1 
HETATM 7 C C13 78A . . . C 3 17.866 19.87 -3.343 1 41.9 ? C13 78A 780 A 1 
HETATM 8 C C12 78A . . . C 3 17.387 18.82 -4.163 1 41.12 ? C12 78A 780 A 1 
HETATM 9 C C2 78A . . . C 3 12.534 18.176 -7.709 1 30.24 ? C2 78A 780 A 1 
HETATM 10 O O1 78A . . . C 3 11.777 17.143 -7.061 1 28.36 ? O1 78A 780 A 1 
HETATM 11 C C3 78A . . . C 3 11.765 19.501 -7.534 1 29.56 ? C3 78A 780 A 1 
HETATM 12 C C4 78A . . . C 3 10.341 19.474 -8.088 1 28.53 ? C4 78A 780 A 1 
HETATM 13 O O4 78A . . . C 3 10.15 19.673 -9.29 1 28.35 ? O4 78A 780 A 1 
HETATM 14 N N1 78A . . . C 3 9.366 19.221 -7.213 1 27.21 ? N1 78A 780 A 1 
HETATM 15 C C5 78A . . . C 3 8.132 18.427 -7.543 1 26.07 ? C5 78A 780 A 1 
HETATM 16 C C6 78A . . . C 3 7.121 19.353 -8.337 1 25.98 ? C6 78A 780 A 1 
HETATM 17 O O5 78A . . . C 3 7.073 20.553 -8.012 1 24.77 ? O5 78A 780 A 1 
HETATM 18 C C17 78A . . . C 3 7.474 17.836 -6.224 1 26.86 ? C17 78A 780 A 1 
HETATM 19 C C19 78A . . . C 3 7.251 18.889 -5.083 1 26.22 ? C19 78A 780 A 1 
HETATM 20 C C18 78A . . . C 3 8.317 16.668 -5.623 1 25.43 ? C18 78A 780 A 1 
HETATM 21 C C20 78A . . . C 3 5.845 18.895 -4.475 1 26.36 ? C20 78A 780 A 1 
HETATM 22 N N2 78A . . . C 3 6.242 18.888 -9.3 1 25.79 ? N2 78A 780 A 1 
HETATM 23 C C7 78A . . . C 3 5.202 19.704 -9.967 1 26.02 ? C7 78A 780 A 1 
HETATM 24 C C8 78A . . . C 3 3.927 20.045 -9.117 1 26.3 ? C8 78A 780 A 1 
HETATM 25 O O6 78A . . . C 3 2.993 20.71 -9.546 1 28.28 ? O6 78A 780 A 1 
HETATM 26 C C23 78A . . . C 3 4.922 18.887 -11.238 1 25.98 ? C23 78A 780 A 1 
HETATM 27 C C22 78A . . . C 3 5.144 17.432 -10.827 1 25.09 ? C22 78A 780 A 1 
HETATM 28 C C21 78A . . . C 3 6.272 17.489 -9.796 1 25.46 ? C21 78A 780 A 1 
HETATM 29 O O7 78A . . . C 3 3.945 19.539 -7.856 1 23.6 ? O7 78A 780 A 1 
HETATM 30 C C9 78A . . . C 3 13.968 18.273 -7.142 1 31.45 ? C9 78A 780 A 1 
HETATM 31 O O2 78A . . . C 3 14.871 18.751 -7.829 1 30.17 ? O2 78A 780 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           418 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           31 
#