data_2DCD # _model_server_result.job_id abEUv08fcxIFJiYJL73EoQ _model_server_result.datetime_utc '2025-01-03 00:45:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dcd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 2DCD # _exptl.entry_id 2DCD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DCD _cell.length_a 72.26 _cell.length_b 72.26 _cell.length_c 140 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DCD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 A SG CYS 43 A CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 26 A CYS 26 1_555 A SG CYS 71 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 62 A CYS 62 1_555 A SG CYS 128 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 63 A CYS 63 1_555 A SG CYS 67 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 A SG CYS 100 A CYS 100 1_555 A SG CYS 132 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 A SG CYS 108 A CYS 108 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 A SG CYS 148 A CYS 148 1_555 A SG CYS 252 A CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A SG CYS 29 A CYS 29 1_555 C C3 78A . A 78A 780 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 335 n n P O2 PO4 sing 336 n n P O3 PO4 sing 337 n n P O4 PO4 sing 338 n n # _atom_sites.entry_id 2DCD _atom_sites.fract_transf_matrix[1][1] 0.013839 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 801 801 PO4 PO4 . C 3 78A A 1 780 780 78A 78A . D 4 GOL A 1 500 500 GOL GOL . E 5 HOH A 1 802 1 HOH WAT . E 5 HOH A 2 803 2 HOH WAT . E 5 HOH A 3 804 3 HOH WAT . E 5 HOH A 4 805 4 HOH WAT . E 5 HOH A 5 806 5 HOH WAT . E 5 HOH A 6 807 7 HOH WAT . E 5 HOH A 7 808 8 HOH WAT . E 5 HOH A 8 809 9 HOH WAT . E 5 HOH A 9 810 10 HOH WAT . E 5 HOH A 10 811 12 HOH WAT . E 5 HOH A 11 812 14 HOH WAT . E 5 HOH A 12 813 16 HOH WAT . E 5 HOH A 13 814 17 HOH WAT . E 5 HOH A 14 815 19 HOH WAT . E 5 HOH A 15 816 20 HOH WAT . E 5 HOH A 16 817 21 HOH WAT . E 5 HOH A 17 818 22 HOH WAT . E 5 HOH A 18 819 24 HOH WAT . E 5 HOH A 19 820 25 HOH WAT . E 5 HOH A 20 821 26 HOH WAT . E 5 HOH A 21 822 27 HOH WAT . E 5 HOH A 22 823 28 HOH WAT . E 5 HOH A 23 824 29 HOH WAT . E 5 HOH A 24 825 30 HOH WAT . E 5 HOH A 25 826 31 HOH WAT . E 5 HOH A 26 827 32 HOH WAT . E 5 HOH A 27 828 33 HOH WAT . E 5 HOH A 28 829 35 HOH WAT . E 5 HOH A 29 830 36 HOH WAT . E 5 HOH A 30 831 37 HOH WAT . E 5 HOH A 31 832 40 HOH WAT . E 5 HOH A 32 833 41 HOH WAT . E 5 HOH A 33 834 42 HOH WAT . E 5 HOH A 34 835 44 HOH WAT . E 5 HOH A 35 836 46 HOH WAT . E 5 HOH A 36 837 47 HOH WAT . E 5 HOH A 37 838 49 HOH WAT . E 5 HOH A 38 839 51 HOH WAT . E 5 HOH A 39 840 52 HOH WAT . E 5 HOH A 40 841 53 HOH WAT . E 5 HOH A 41 842 54 HOH WAT . E 5 HOH A 42 843 55 HOH WAT . E 5 HOH A 43 844 56 HOH WAT . E 5 HOH A 44 845 57 HOH WAT . E 5 HOH A 45 846 58 HOH WAT . E 5 HOH A 46 847 60 HOH WAT . E 5 HOH A 47 848 61 HOH WAT . E 5 HOH A 48 849 63 HOH WAT . E 5 HOH A 49 850 65 HOH WAT . E 5 HOH A 50 851 66 HOH WAT . E 5 HOH A 51 852 67 HOH WAT . E 5 HOH A 52 853 70 HOH WAT . E 5 HOH A 53 854 71 HOH WAT . E 5 HOH A 54 855 72 HOH WAT . E 5 HOH A 55 856 73 HOH WAT . E 5 HOH A 56 857 74 HOH WAT . E 5 HOH A 57 858 75 HOH WAT . E 5 HOH A 58 859 77 HOH WAT . E 5 HOH A 59 860 78 HOH WAT . E 5 HOH A 60 861 79 HOH WAT . E 5 HOH A 61 862 80 HOH WAT . E 5 HOH A 62 863 82 HOH WAT . E 5 HOH A 63 864 86 HOH WAT . E 5 HOH A 64 865 87 HOH WAT . E 5 HOH A 65 866 88 HOH WAT . E 5 HOH A 66 867 89 HOH WAT . E 5 HOH A 67 868 90 HOH WAT . E 5 HOH A 68 869 91 HOH WAT . E 5 HOH A 69 870 93 HOH WAT . E 5 HOH A 70 871 94 HOH WAT . E 5 HOH A 71 872 96 HOH WAT . E 5 HOH A 72 873 97 HOH WAT . E 5 HOH A 73 874 98 HOH WAT . E 5 HOH A 74 875 99 HOH WAT . E 5 HOH A 75 876 100 HOH WAT . E 5 HOH A 76 877 103 HOH WAT . E 5 HOH A 77 878 104 HOH WAT . E 5 HOH A 78 879 105 HOH WAT . E 5 HOH A 79 880 107 HOH WAT . E 5 HOH A 80 881 110 HOH WAT . E 5 HOH A 81 882 111 HOH WAT . E 5 HOH A 82 883 113 HOH WAT . E 5 HOH A 83 884 114 HOH WAT . E 5 HOH A 84 885 115 HOH WAT . E 5 HOH A 85 886 116 HOH WAT . E 5 HOH A 86 887 117 HOH WAT . E 5 HOH A 87 888 118 HOH WAT . E 5 HOH A 88 889 119 HOH WAT . E 5 HOH A 89 890 120 HOH WAT . E 5 HOH A 90 891 121 HOH WAT . E 5 HOH A 91 892 122 HOH WAT . E 5 HOH A 92 893 123 HOH WAT . E 5 HOH A 93 894 124 HOH WAT . E 5 HOH A 94 895 125 HOH WAT . E 5 HOH A 95 896 126 HOH WAT . E 5 HOH A 96 897 127 HOH WAT . E 5 HOH A 97 898 128 HOH WAT . E 5 HOH A 98 899 129 HOH WAT . E 5 HOH A 99 900 130 HOH WAT . E 5 HOH A 100 901 131 HOH WAT . E 5 HOH A 101 902 132 HOH WAT . E 5 HOH A 102 903 133 HOH WAT . E 5 HOH A 103 904 134 HOH WAT . E 5 HOH A 104 905 135 HOH WAT . E 5 HOH A 105 906 136 HOH WAT . E 5 HOH A 106 907 137 HOH WAT . E 5 HOH A 107 908 138 HOH WAT . E 5 HOH A 108 909 139 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 16.944 50.537 -2.525 1 46.94 ? P PO4 801 A 1 HETATM 2 O O1 PO4 . . . B 2 18.41 50.48 -2.773 1 45.72 ? O1 PO4 801 A 1 HETATM 3 O O2 PO4 . . . B 2 16.679 51.382 -1.331 1 47.66 ? O2 PO4 801 A 1 HETATM 4 O O3 PO4 . . . B 2 16.259 51.122 -3.709 1 47.33 ? O3 PO4 801 A 1 HETATM 5 O O4 PO4 . . . B 2 16.428 49.163 -2.288 1 46.92 ? O4 PO4 801 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #