data_2DCU # _model_server_result.job_id JPoVTL-DGw35Q_PYpIV7vA _model_server_result.datetime_utc '2024-10-13 09:13:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dcu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3001}' # _entry.id 2DCU # _exptl.entry_id 2DCU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DCU _cell.length_a 69.198 _cell.length_b 76.561 _cell.length_c 97.857 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DCU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 110 B CYS 110 1_555 B SG CYS 131 B CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? metalc ? metalc1 A OG1 THR 25 A THR 25 1_555 C MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc2 A SG CYS 61 A CYS 61 1_555 D ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc3 A SG CYS 64 A CYS 64 1_555 D ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc4 A SG CYS 73 A CYS 73 1_555 D ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc5 A SG CYS 76 A CYS 76 1_555 D ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc6 C MG MG . A MG 1001 1_555 E O3B GDP . A GDP 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc7 C MG MG . A MG 1001 1_555 G O HOH . A HOH 3057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc8 B SG CYS 107 B CYS 107 1_555 F ZN ZN . B ZN 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc9 B SG CYS 110 B CYS 110 1_555 F ZN ZN . B ZN 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc10 B SG CYS 128 B CYS 128 1_555 F ZN ZN . B ZN 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc11 B SG CYS 131 B CYS 131 1_555 F ZN ZN . B ZN 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2DCU _atom_sites.fract_transf_matrix[1][1] 0.014451 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013061 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1001 1 MG MG . D 4 ZN A 1 3001 1 ZN ZN . E 5 GDP A 1 2001 1 GDP MG . F 4 ZN B 1 3002 1 ZN ZN . G 6 HOH A 1 3002 1 HOH HOH . G 6 HOH A 2 3003 2 HOH HOH . G 6 HOH A 3 3004 3 HOH HOH . G 6 HOH A 4 3005 5 HOH HOH . G 6 HOH A 5 3006 7 HOH HOH . G 6 HOH A 6 3007 8 HOH HOH . G 6 HOH A 7 3008 9 HOH HOH . G 6 HOH A 8 3009 10 HOH HOH . G 6 HOH A 9 3010 11 HOH HOH . G 6 HOH A 10 3011 12 HOH HOH . G 6 HOH A 11 3012 13 HOH HOH . G 6 HOH A 12 3013 14 HOH HOH . G 6 HOH A 13 3014 15 HOH HOH . G 6 HOH A 14 3015 16 HOH HOH . G 6 HOH A 15 3016 17 HOH HOH . G 6 HOH A 16 3017 18 HOH HOH . G 6 HOH A 17 3018 19 HOH HOH . G 6 HOH A 18 3019 21 HOH HOH . G 6 HOH A 19 3020 23 HOH HOH . G 6 HOH A 20 3021 26 HOH HOH . G 6 HOH A 21 3022 28 HOH HOH . G 6 HOH A 22 3023 30 HOH HOH . G 6 HOH A 23 3024 31 HOH HOH . G 6 HOH A 24 3025 32 HOH HOH . G 6 HOH A 25 3026 33 HOH HOH . G 6 HOH A 26 3027 35 HOH HOH . G 6 HOH A 27 3028 36 HOH HOH . G 6 HOH A 28 3029 37 HOH HOH . G 6 HOH A 29 3030 40 HOH HOH . G 6 HOH A 30 3031 41 HOH HOH . G 6 HOH A 31 3032 42 HOH HOH . G 6 HOH A 32 3033 43 HOH HOH . G 6 HOH A 33 3034 44 HOH HOH . G 6 HOH A 34 3035 45 HOH HOH . G 6 HOH A 35 3036 46 HOH HOH . G 6 HOH A 36 3037 47 HOH HOH . G 6 HOH A 37 3038 50 HOH HOH . G 6 HOH A 38 3039 51 HOH HOH . G 6 HOH A 39 3040 52 HOH HOH . G 6 HOH A 40 3041 53 HOH HOH . G 6 HOH A 41 3042 54 HOH HOH . G 6 HOH A 42 3043 55 HOH HOH . G 6 HOH A 43 3044 56 HOH HOH . G 6 HOH A 44 3045 57 HOH HOH . G 6 HOH A 45 3046 58 HOH HOH . G 6 HOH A 46 3047 59 HOH HOH . G 6 HOH A 47 3048 60 HOH HOH . G 6 HOH A 48 3049 62 HOH HOH . G 6 HOH A 49 3050 63 HOH HOH . G 6 HOH A 50 3051 64 HOH HOH . G 6 HOH A 51 3052 65 HOH HOH . G 6 HOH A 52 3053 68 HOH HOH . G 6 HOH A 53 3054 69 HOH HOH . G 6 HOH A 54 3055 71 HOH HOH . G 6 HOH A 55 3056 72 HOH HOH . G 6 HOH A 56 3057 73 HOH HOH . G 6 HOH A 57 3058 75 HOH HOH . G 6 HOH A 58 3059 76 HOH HOH . G 6 HOH A 59 3060 78 HOH HOH . G 6 HOH A 60 3061 79 HOH HOH . G 6 HOH A 61 3062 80 HOH HOH . G 6 HOH A 62 3063 81 HOH HOH . G 6 HOH A 63 3064 82 HOH HOH . G 6 HOH A 64 3065 83 HOH HOH . G 6 HOH A 65 3066 85 HOH HOH . G 6 HOH A 66 3067 86 HOH HOH . G 6 HOH A 67 3068 88 HOH HOH . G 6 HOH A 68 3069 89 HOH HOH . G 6 HOH A 69 3070 91 HOH HOH . G 6 HOH A 70 3071 92 HOH HOH . G 6 HOH A 71 3072 93 HOH HOH . G 6 HOH A 72 3073 94 HOH HOH . G 6 HOH A 73 3074 95 HOH HOH . G 6 HOH A 74 3075 97 HOH HOH . G 6 HOH A 75 3076 98 HOH HOH . G 6 HOH A 76 3077 99 HOH HOH . G 6 HOH A 77 3078 100 HOH HOH . G 6 HOH A 78 3079 101 HOH HOH . G 6 HOH A 79 3080 102 HOH HOH . G 6 HOH A 80 3081 103 HOH HOH . G 6 HOH A 81 3082 104 HOH HOH . G 6 HOH A 82 3083 105 HOH HOH . G 6 HOH A 83 3084 106 HOH HOH . G 6 HOH A 84 3085 107 HOH HOH . G 6 HOH A 85 3086 108 HOH HOH . H 6 HOH B 1 3003 4 HOH HOH . H 6 HOH B 2 3004 6 HOH HOH . H 6 HOH B 3 3005 20 HOH HOH . H 6 HOH B 4 3006 22 HOH HOH . H 6 HOH B 5 3007 24 HOH HOH . H 6 HOH B 6 3008 25 HOH HOH . H 6 HOH B 7 3009 27 HOH HOH . H 6 HOH B 8 3010 29 HOH HOH . H 6 HOH B 9 3011 34 HOH HOH . H 6 HOH B 10 3012 38 HOH HOH . H 6 HOH B 11 3013 39 HOH HOH . H 6 HOH B 12 3014 48 HOH HOH . H 6 HOH B 13 3015 49 HOH HOH . H 6 HOH B 14 3016 61 HOH HOH . H 6 HOH B 15 3017 66 HOH HOH . H 6 HOH B 16 3018 67 HOH HOH . H 6 HOH B 17 3019 70 HOH HOH . H 6 HOH B 18 3020 74 HOH HOH . H 6 HOH B 19 3021 77 HOH HOH . H 6 HOH B 20 3022 84 HOH HOH . H 6 HOH B 21 3023 87 HOH HOH . H 6 HOH B 22 3024 90 HOH HOH . H 6 HOH B 23 3025 96 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 14.074 _atom_site.Cartn_y 62.189 _atom_site.Cartn_z -0.176 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 3001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #