data_2DDQ # _model_server_result.job_id roxFj6f832ofFmnP7aQhrA _model_server_result.datetime_utc '2024-11-25 06:38:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ddq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 2DDQ # _exptl.entry_id 2DDQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 353.413 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-ACETYL-1-[(2R,3S,5R)-5-HYDROXY-2-PENTYLTETRAHYDROFURAN-3-YL]-L-HISTIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.77 _cell.angle_gamma 90 _cell.entry_id 2DDQ _cell.length_a 127.318 _cell.length_b 65.794 _cell.length_c 64.31 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DDQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 140 H CYS 140 1_555 A SG CYS 195 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 93 L CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf4 B SG CYS 139 L CYS 139 1_555 B SG CYS 199 L CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C17 H27 N3 O5' _chem_comp.formula_weight 353.413 _chem_comp.id HRB _chem_comp.mon_nstd_flag . _chem_comp.name N-ACETYL-1-[(2R,3S,5R)-5-HYDROXY-2-PENTYLTETRAHYDROFURAN-3-YL]-L-HISTIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CP5 CP4 HRB sing 185 n n CP5 HP51 HRB sing 186 n n CP5 HP52 HRB sing 187 n n CP5 HP53 HRB sing 188 n n CP4 CP3 HRB sing 189 n n CP4 HP41 HRB sing 190 n n CP4 HP42 HRB sing 191 n n CP3 CP2 HRB sing 192 n n CP3 HP31 HRB sing 193 n n CP3 HP32 HRB sing 194 n n CP2 CP1 HRB sing 195 n n CP2 HP21 HRB sing 196 n n CP2 HP22 HRB sing 197 n n CP1 C5 HRB sing 198 n n CP1 HP11 HRB sing 199 n n CP1 HP12 HRB sing 200 n n C5 O1 HRB sing 201 n n C5 C4 HRB sing 202 n n C5 H5 HRB sing 203 n n O1 C2 HRB sing 204 n n C2 O2 HRB sing 205 n n C2 C3 HRB sing 206 n n C2 H2 HRB sing 207 n n O2 HO2 HRB sing 208 n n C3 C4 HRB sing 209 n n C3 H31 HRB sing 210 n n C3 H32 HRB sing 211 n n C4 NE2 HRB sing 212 n n C4 H4 HRB sing 213 n n NE2 CD2 HRB sing 214 n y NE2 CE1 HRB sing 215 n y CD2 CG HRB doub 216 n y CD2 HD2 HRB sing 217 n n CE1 ND1 HRB doub 218 n y CE1 HE1 HRB sing 219 n n ND1 CG HRB sing 220 n y CG CB HRB sing 221 n n CB CA HRB sing 222 n n CB HB1 HRB sing 223 n n CB HB2 HRB sing 224 n n CA C HRB sing 225 n n CA N HRB sing 226 n n CA HA HRB sing 227 n n C O HRB sing 228 n n C OXT HRB doub 229 n n O HO HRB sing 230 n n N CA1 HRB sing 231 n n N HN HRB sing 232 n n CA1 CA2 HRB sing 233 n n CA1 OA1 HRB doub 234 n n CA2 HA21 HRB sing 235 n n CA2 HA22 HRB sing 236 n n CA2 HA23 HRB sing 237 n n # _atom_sites.entry_id 2DDQ _atom_sites.fract_transf_matrix[1][1] 0.007854 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004313 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015199 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EPE H 1 501 501 EPE EPE . D 4 HRB L 1 502 502 HRB HRB . E 5 HOH H 1 502 2 HOH WAT . E 5 HOH H 2 503 3 HOH WAT . E 5 HOH H 3 504 4 HOH WAT . E 5 HOH H 4 505 5 HOH WAT . E 5 HOH H 5 506 6 HOH WAT . E 5 HOH H 6 507 8 HOH WAT . E 5 HOH H 7 508 9 HOH WAT . E 5 HOH H 8 509 10 HOH WAT . E 5 HOH H 9 510 11 HOH WAT . E 5 HOH H 10 511 12 HOH WAT . E 5 HOH H 11 512 13 HOH WAT . E 5 HOH H 12 513 15 HOH WAT . E 5 HOH H 13 514 16 HOH WAT . E 5 HOH H 14 515 17 HOH WAT . E 5 HOH H 15 516 19 HOH WAT . E 5 HOH H 16 517 23 HOH WAT . E 5 HOH H 17 518 24 HOH WAT . E 5 HOH H 18 519 29 HOH WAT . E 5 HOH H 19 520 33 HOH WAT . E 5 HOH H 20 521 37 HOH WAT . E 5 HOH H 21 522 38 HOH WAT . E 5 HOH H 22 523 40 HOH WAT . E 5 HOH H 23 524 41 HOH WAT . E 5 HOH H 24 525 45 HOH WAT . E 5 HOH H 25 526 48 HOH WAT . E 5 HOH H 26 527 51 HOH WAT . E 5 HOH H 27 528 53 HOH WAT . E 5 HOH H 28 529 54 HOH WAT . E 5 HOH H 29 530 55 HOH WAT . E 5 HOH H 30 531 58 HOH WAT . E 5 HOH H 31 532 59 HOH WAT . E 5 HOH H 32 533 60 HOH WAT . E 5 HOH H 33 534 67 HOH WAT . E 5 HOH H 34 535 69 HOH WAT . E 5 HOH H 35 536 71 HOH WAT . E 5 HOH H 36 537 72 HOH WAT . E 5 HOH H 37 538 73 HOH WAT . E 5 HOH H 38 539 75 HOH WAT . E 5 HOH H 39 540 79 HOH WAT . E 5 HOH H 40 541 80 HOH WAT . E 5 HOH H 41 542 81 HOH WAT . E 5 HOH H 42 543 83 HOH WAT . E 5 HOH H 43 544 87 HOH WAT . E 5 HOH H 44 545 89 HOH WAT . E 5 HOH H 45 546 91 HOH WAT . E 5 HOH H 46 547 92 HOH WAT . E 5 HOH H 47 548 93 HOH WAT . E 5 HOH H 48 549 96 HOH WAT . E 5 HOH H 49 550 97 HOH WAT . E 5 HOH H 50 551 100 HOH WAT . E 5 HOH H 51 552 101 HOH WAT . E 5 HOH H 52 553 103 HOH WAT . E 5 HOH H 53 554 104 HOH WAT . E 5 HOH H 54 555 107 HOH WAT . E 5 HOH H 55 556 108 HOH WAT . E 5 HOH H 56 557 109 HOH WAT . E 5 HOH H 57 558 110 HOH WAT . E 5 HOH H 58 559 116 HOH WAT . E 5 HOH H 59 560 123 HOH WAT . E 5 HOH H 60 561 124 HOH WAT . E 5 HOH H 61 562 125 HOH WAT . E 5 HOH H 62 563 127 HOH WAT . E 5 HOH H 63 564 130 HOH WAT . E 5 HOH H 64 565 131 HOH WAT . E 5 HOH H 65 566 132 HOH WAT . E 5 HOH H 66 567 133 HOH WAT . E 5 HOH H 67 568 136 HOH WAT . E 5 HOH H 68 569 138 HOH WAT . E 5 HOH H 69 570 139 HOH WAT . E 5 HOH H 70 571 140 HOH WAT . E 5 HOH H 71 572 141 HOH WAT . E 5 HOH H 72 573 145 HOH WAT . E 5 HOH H 73 574 149 HOH WAT . F 5 HOH L 1 503 1 HOH WAT . F 5 HOH L 2 504 7 HOH WAT . F 5 HOH L 3 505 14 HOH WAT . F 5 HOH L 4 506 18 HOH WAT . F 5 HOH L 5 507 20 HOH WAT . F 5 HOH L 6 508 21 HOH WAT . F 5 HOH L 7 509 22 HOH WAT . F 5 HOH L 8 510 25 HOH WAT . F 5 HOH L 9 511 26 HOH WAT . F 5 HOH L 10 512 27 HOH WAT . F 5 HOH L 11 513 28 HOH WAT . F 5 HOH L 12 514 30 HOH WAT . F 5 HOH L 13 515 31 HOH WAT . F 5 HOH L 14 516 32 HOH WAT . F 5 HOH L 15 517 34 HOH WAT . F 5 HOH L 16 518 35 HOH WAT . F 5 HOH L 17 519 36 HOH WAT . F 5 HOH L 18 520 39 HOH WAT . F 5 HOH L 19 521 42 HOH WAT . F 5 HOH L 20 522 43 HOH WAT . F 5 HOH L 21 523 44 HOH WAT . F 5 HOH L 22 524 46 HOH WAT . F 5 HOH L 23 525 47 HOH WAT . F 5 HOH L 24 526 49 HOH WAT . F 5 HOH L 25 527 50 HOH WAT . F 5 HOH L 26 528 52 HOH WAT . F 5 HOH L 27 529 56 HOH WAT . F 5 HOH L 28 530 57 HOH WAT . F 5 HOH L 29 531 61 HOH WAT . F 5 HOH L 30 532 62 HOH WAT . F 5 HOH L 31 533 63 HOH WAT . F 5 HOH L 32 534 64 HOH WAT . F 5 HOH L 33 535 65 HOH WAT . F 5 HOH L 34 536 66 HOH WAT . F 5 HOH L 35 537 68 HOH WAT . F 5 HOH L 36 538 70 HOH WAT . F 5 HOH L 37 539 74 HOH WAT . F 5 HOH L 38 540 76 HOH WAT . F 5 HOH L 39 541 77 HOH WAT . F 5 HOH L 40 542 78 HOH WAT . F 5 HOH L 41 543 82 HOH WAT . F 5 HOH L 42 544 84 HOH WAT . F 5 HOH L 43 545 85 HOH WAT . F 5 HOH L 44 546 86 HOH WAT . F 5 HOH L 45 547 88 HOH WAT . F 5 HOH L 46 548 90 HOH WAT . F 5 HOH L 47 549 94 HOH WAT . F 5 HOH L 48 550 95 HOH WAT . F 5 HOH L 49 551 98 HOH WAT . F 5 HOH L 50 552 99 HOH WAT . F 5 HOH L 51 553 102 HOH WAT . F 5 HOH L 52 554 105 HOH WAT . F 5 HOH L 53 555 106 HOH WAT . F 5 HOH L 54 556 111 HOH WAT . F 5 HOH L 55 557 112 HOH WAT . F 5 HOH L 56 558 113 HOH WAT . F 5 HOH L 57 559 114 HOH WAT . F 5 HOH L 58 560 115 HOH WAT . F 5 HOH L 59 561 117 HOH WAT . F 5 HOH L 60 562 118 HOH WAT . F 5 HOH L 61 563 119 HOH WAT . F 5 HOH L 62 564 120 HOH WAT . F 5 HOH L 63 565 121 HOH WAT . F 5 HOH L 64 566 122 HOH WAT . F 5 HOH L 65 567 126 HOH WAT . F 5 HOH L 66 568 128 HOH WAT . F 5 HOH L 67 569 129 HOH WAT . F 5 HOH L 68 570 134 HOH WAT . F 5 HOH L 69 571 135 HOH WAT . F 5 HOH L 70 572 137 HOH WAT . F 5 HOH L 71 573 142 HOH WAT . F 5 HOH L 72 574 143 HOH WAT . F 5 HOH L 73 575 144 HOH WAT . F 5 HOH L 74 576 146 HOH WAT . F 5 HOH L 75 577 147 HOH WAT . F 5 HOH L 76 578 148 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CP5 HRB . . . D 4 46.49 -1.081 5.786 1 9.72 ? CP5 HRB 502 L 1 HETATM 2 C CP4 HRB . . . D 4 47.557 -1.802 4.959 1 14.21 ? CP4 HRB 502 L 1 HETATM 3 C CP3 HRB . . . D 4 48.332 -0.803 4.101 1 18.08 ? CP3 HRB 502 L 1 HETATM 4 C CP2 HRB . . . D 4 49.471 -1.494 3.347 1 25.73 ? CP2 HRB 502 L 1 HETATM 5 C CP1 HRB . . . D 4 50.257 -0.479 2.516 1 27.82 ? CP1 HRB 502 L 1 HETATM 6 C C5 HRB . . . D 4 51.413 -1.151 1.768 1 29.13 ? C5 HRB 502 L 1 HETATM 7 O O1 HRB . . . D 4 50.941 -2.124 0.814 1 36.73 ? O1 HRB 502 L 1 HETATM 8 C C2 HRB . . . D 4 51.233 -1.617 -0.503 1 40.76 ? C2 HRB 502 L 1 HETATM 9 O O2 HRB . . . D 4 50.196 -0.731 -0.945 1 41.31 ? O2 HRB 502 L 1 HETATM 10 C C3 HRB . . . D 4 52.545 -0.859 -0.29 1 33.25 ? C3 HRB 502 L 1 HETATM 11 C C4 HRB . . . D 4 52.137 -0.075 0.956 1 30.48 ? C4 HRB 502 L 1 HETATM 12 N NE2 HRB . . . D 4 53.302 0.492 1.664 1 33.12 ? NE2 HRB 502 L 1 HETATM 13 C CD2 HRB . . . D 4 54.295 -0.182 2.227 1 38.65 ? CD2 HRB 502 L 1 HETATM 14 C CE1 HRB . . . D 4 53.549 1.801 1.737 1 35.91 ? CE1 HRB 502 L 1 HETATM 15 N ND1 HRB . . . D 4 54.72 1.929 2.351 1 36.43 ? ND1 HRB 502 L 1 HETATM 16 C CG HRB . . . D 4 55.185 0.715 2.646 1 36.17 ? CG HRB 502 L 1 HETATM 17 C CB HRB . . . D 4 56.536 0.42 3.305 1 38.95 ? CB HRB 502 L 1 HETATM 18 C CA HRB . . . D 4 57.67 1.177 2.606 1 43.88 ? CA HRB 502 L 1 HETATM 19 C C HRB . . . D 4 58.957 1.075 3.429 1 44.46 ? C HRB 502 L 1 HETATM 20 O O HRB . . . D 4 59.181 1.998 4.24 1 45.34 ? O HRB 502 L 1 HETATM 21 O OXT HRB . . . D 4 59.695 0.083 3.222 1 45.36 ? OXT HRB 502 L 1 HETATM 22 N N HRB . . . D 4 57.888 0.642 1.255 1 45.6 ? N HRB 502 L 1 HETATM 23 C CA1 HRB . . . D 4 57.988 1.43 0.183 1 54.15 ? CA1 HRB 502 L 1 HETATM 24 C CA2 HRB . . . D 4 58.226 0.694 -1.136 1 58.16 ? CA2 HRB 502 L 1 HETATM 25 O OA1 HRB . . . D 4 57.903 2.656 0.214 1 63.14 ? OA1 HRB 502 L 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #