data_2DDW
#
_model_server_result.job_id            OdDDf70rXErlwDA4JJ79kA 
_model_server_result.datetime_utc      '2025-03-06 10:07:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ddw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1003}' 
#
_entry.id    2DDW 
#
_exptl.entry_id    2DDW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              167.162 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-HYDROXY-5-(HYDROXYMETHYL)-2-METHYLISONICOTINALDEHYDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2DDW 
_cell.length_a            65.668 
_cell.length_b            75.028 
_cell.length_c            109.36 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2DDW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C8 H9 N O3' 
_chem_comp.formula_weight    167.162 
_chem_comp.id                PXL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-HYDROXY-5-(HYDROXYMETHYL)-2-METHYLISONICOTINALDEHYDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PYRIDOXAL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OP4 C5A PXL sing 277 n n 
OP4 HP4 PXL sing 278 n n 
C5A C5 PXL sing 279 n n 
C5A H5A1 PXL sing 280 n n 
C5A H5A2 PXL sing 281 n n 
C5 C6 PXL doub 282 n y 
C5 C4 PXL sing 283 n y 
C6 N1 PXL sing 284 n y 
C6 H6 PXL sing 285 n n 
N1 C2 PXL doub 286 n y 
C2 C3 PXL sing 287 n y 
C2 C2A PXL sing 288 n n 
C3 C4 PXL doub 289 n y 
C3 O3 PXL sing 290 n n 
C4 C4A PXL sing 291 n n 
C4A O4A PXL doub 292 n n 
C4A H4A PXL sing 293 n n 
O3 HO3 PXL sing 294 n n 
C2A H2A1 PXL sing 295 n n 
C2A H2A2 PXL sing 296 n n 
C2A H2A3 PXL sing 297 n n 
#
_atom_sites.entry_id                     2DDW 
_atom_sites.fract_transf_matrix[1][1]    0.015228 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013328 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009144 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PXL A 1 1003 3 PXL PNL . 
D 2 PXL B 1 1005 5 PXL PNL . 
E 3 HOH A 1 1004 1 HOH HOH . 
E 3 HOH A 2 1005 2 HOH HOH . 
E 3 HOH A 3 1006 3 HOH HOH . 
E 3 HOH A 4 1007 4 HOH HOH . 
E 3 HOH A 5 1008 9 HOH HOH . 
E 3 HOH A 6 1009 10 HOH HOH . 
E 3 HOH A 7 1010 11 HOH HOH . 
E 3 HOH A 8 1011 12 HOH HOH . 
E 3 HOH A 9 1012 19 HOH HOH . 
E 3 HOH A 10 1013 20 HOH HOH . 
E 3 HOH A 11 1014 21 HOH HOH . 
E 3 HOH A 12 1015 22 HOH HOH . 
E 3 HOH A 13 1016 23 HOH HOH . 
E 3 HOH A 14 1017 24 HOH HOH . 
E 3 HOH A 15 1018 25 HOH HOH . 
E 3 HOH A 16 1019 30 HOH HOH . 
E 3 HOH A 17 1020 31 HOH HOH . 
E 3 HOH A 18 1021 32 HOH HOH . 
E 3 HOH A 19 1022 33 HOH HOH . 
E 3 HOH A 20 1023 34 HOH HOH . 
E 3 HOH A 21 1024 39 HOH HOH . 
E 3 HOH A 22 1025 40 HOH HOH . 
E 3 HOH A 23 1026 41 HOH HOH . 
E 3 HOH A 24 1027 42 HOH HOH . 
F 3 HOH B 1 1006 5 HOH HOH . 
F 3 HOH B 2 1007 6 HOH HOH . 
F 3 HOH B 3 1008 7 HOH HOH . 
F 3 HOH B 4 1009 8 HOH HOH . 
F 3 HOH B 5 1010 13 HOH HOH . 
F 3 HOH B 6 1011 14 HOH HOH . 
F 3 HOH B 7 1012 15 HOH HOH . 
F 3 HOH B 8 1013 16 HOH HOH . 
F 3 HOH B 9 1014 17 HOH HOH . 
F 3 HOH B 10 1015 18 HOH HOH . 
F 3 HOH B 11 1016 26 HOH HOH . 
F 3 HOH B 12 1017 27 HOH HOH . 
F 3 HOH B 13 1018 28 HOH HOH . 
F 3 HOH B 14 1019 29 HOH HOH . 
F 3 HOH B 15 1020 35 HOH HOH . 
F 3 HOH B 16 1021 36 HOH HOH . 
F 3 HOH B 17 1022 37 HOH HOH . 
F 3 HOH B 18 1023 38 HOH HOH . 
F 3 HOH B 19 1024 43 HOH HOH . 
F 3 HOH B 20 1025 44 HOH HOH . 
F 3 HOH B 21 1026 45 HOH HOH . 
F 3 HOH B 22 1027 46 HOH HOH . 
F 3 HOH B 23 1028 47 HOH HOH . 
F 3 HOH B 24 1029 48 HOH HOH . 
F 3 HOH B 25 1030 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OP4 PXL . . . C 2 -2.358 8.334 41.38 1 60.19 ? OP4 PXL 1003 A 1 
HETATM 2 C C5A PXL . . . C 2 -2.882 7.211 40.669 1 57.55 ? C5A PXL 1003 A 1 
HETATM 3 C C5 PXL . . . C 2 -1.951 6.833 39.509 1 55.11 ? C5 PXL 1003 A 1 
HETATM 4 C C6 PXL . . . C 2 -0.615 6.377 39.807 1 56.21 ? C6 PXL 1003 A 1 
HETATM 5 N N1 PXL . . . C 2 0.256 6.025 38.743 1 48.4 ? N1 PXL 1003 A 1 
HETATM 6 C C2 PXL . . . C 2 -0.182 6.043 37.391 1 40.96 ? C2 PXL 1003 A 1 
HETATM 7 C C3 PXL . . . C 2 -1.532 6.464 37.056 1 49.82 ? C3 PXL 1003 A 1 
HETATM 8 C C4 PXL . . . C 2 -2.421 6.903 38.15 1 56.18 ? C4 PXL 1003 A 1 
HETATM 9 C C4A PXL . . . C 2 -3.87 7.435 37.904 1 59.98 ? C4A PXL 1003 A 1 
HETATM 10 O O4A PXL . . . C 2 -4.284 7.512 36.697 1 59.24 ? O4A PXL 1003 A 1 
HETATM 11 O O3 PXL . . . C 2 -1.945 6.488 35.729 1 62.81 ? O3 PXL 1003 A 1 
HETATM 12 C C2A PXL . . . C 2 0.81 5.647 36.298 1 40.49 ? C2A PXL 1003 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           12 
#