data_2DES
#
_model_server_result.job_id            Yrr5HvuLRNSeXrR_xBinFg 
_model_server_result.datetime_utc      '2024-10-18 13:18:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2des 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":16}' 
#
_entry.id    2DES 
#
_exptl.entry_id    2DES 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         92.6 
_cell.angle_beta          100.5 
_cell.angle_gamma         94.9 
_cell.entry_id            2DES 
_cell.length_a            18.01 
_cell.length_b            18.83 
_cell.length_c            26.75 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2DES 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A N7 DG 6 A DG 6 1_555 E NA NA . A NA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? 
metalc ? metalc2 C O4 DMM . A DMM 13 1_555 G NA NA . B NA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc3 D O4 DMM . A DMM 14 1_555 E NA NA . A NA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? 
metalc ? metalc4 D O6 DMM . A DMM 14 1_555 E NA NA . A NA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.975 ? 
metalc ? metalc5 E NA NA . A NA 17 1_555 H O HOH . A HOH 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? 
metalc ? metalc6 E NA NA . A NA 17 1_555 H O HOH . A HOH 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc7 E NA NA . A NA 17 1_555 H O HOH . A HOH 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc8 H O HOH . A HOH 48 1_555 F MG MG . B MG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc9 H O HOH . A HOH 57 1_555 F MG MG . B MG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc10 F MG MG . B MG 15 1_555 I O HOH . B HOH 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc11 F MG MG . B MG 15 1_555 I O HOH . B HOH 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc12 F MG MG . B MG 15 1_555 I O HOH . B HOH 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? 
metalc ? metalc13 F MG MG . B MG 15 1_555 I O HOH . B HOH 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc14 G NA NA . B NA 16 1_555 I O HOH . B HOH 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc15 G NA NA . B NA 16 1_555 I O HOH . B HOH 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc16 G NA NA . B NA 16 1_555 I O HOH . B HOH 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? 
hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N3 DT 3 A DT 3 1_555 B N1 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A O4 DT 3 A DT 3 1_555 B N6 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N1 DA 4 A DA 4 1_555 B N3 DT 3 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N6 DA 4 A DA 4 1_555 B O4 DT 3 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N3 DC 5 A DC 5 1_555 B N1 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N4 DC 5 A DC 5 1_555 B O6 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A O2 DC 5 A DC 5 1_555 B N2 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N1 DG 6 A DG 6 1_555 B N3 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N2 DG 6 A DG 6 1_555 B O2 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A O6 DG 6 A DG 6 1_555 B N4 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2DES 
_atom_sites.fract_transf_matrix[1][1]    0.055525 
_atom_sites.fract_transf_matrix[1][2]    0.00476 
_atom_sites.fract_transf_matrix[1][3]    0.010607 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.053302 
_atom_sites.fract_transf_matrix[2][3]    0.003321 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.038094 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DMM A 1 13 13 DMM DMM . 
D 2 DMM A 1 14 14 DMM DMM . 
E 3 NA A 1 17 17 NA NA . 
F 4 MG B 1 15 15 MG MG . 
G 3 NA B 1 16 16 NA NA . 
H 5 HOH A 1 18 18 HOH HOH . 
H 5 HOH A 2 20 20 HOH HOH . 
H 5 HOH A 3 22 22 HOH HOH . 
H 5 HOH A 4 23 23 HOH HOH . 
H 5 HOH A 5 24 24 HOH HOH . 
H 5 HOH A 6 25 25 HOH HOH . 
H 5 HOH A 7 26 26 HOH HOH . 
H 5 HOH A 8 27 27 HOH HOH . 
H 5 HOH A 9 29 29 HOH HOH . 
H 5 HOH A 10 31 31 HOH HOH . 
H 5 HOH A 11 36 36 HOH HOH . 
H 5 HOH A 12 37 37 HOH HOH . 
H 5 HOH A 13 40 40 HOH HOH . 
H 5 HOH A 14 42 42 HOH HOH . 
H 5 HOH A 15 43 43 HOH HOH . 
H 5 HOH A 16 45 45 HOH HOH . 
H 5 HOH A 17 47 47 HOH HOH . 
H 5 HOH A 18 48 48 HOH HOH . 
H 5 HOH A 19 55 55 HOH HOH . 
H 5 HOH A 20 57 57 HOH HOH . 
H 5 HOH A 21 60 60 HOH HOH . 
H 5 HOH A 22 63 63 HOH HOH . 
H 5 HOH A 23 64 64 HOH HOH . 
H 5 HOH A 24 67 67 HOH HOH . 
H 5 HOH A 25 69 69 HOH HOH . 
H 5 HOH A 26 70 70 HOH HOH . 
H 5 HOH A 27 72 72 HOH HOH . 
H 5 HOH A 28 73 73 HOH HOH . 
H 5 HOH A 29 74 74 HOH HOH . 
H 5 HOH A 30 75 75 HOH HOH . 
H 5 HOH A 31 77 77 HOH HOH . 
H 5 HOH A 32 78 78 HOH HOH . 
H 5 HOH A 33 79 79 HOH HOH . 
H 5 HOH A 34 80 80 HOH HOH . 
H 5 HOH A 35 81 81 HOH HOH . 
H 5 HOH A 36 84 84 HOH HOH . 
H 5 HOH A 37 85 85 HOH HOH . 
H 5 HOH A 38 86 86 HOH HOH . 
H 5 HOH A 39 87 87 HOH HOH . 
H 5 HOH A 40 88 88 HOH HOH . 
H 5 HOH A 41 89 89 HOH HOH . 
H 5 HOH A 42 90 90 HOH HOH . 
H 5 HOH A 43 91 91 HOH HOH . 
H 5 HOH A 44 92 92 HOH HOH . 
H 5 HOH A 45 93 93 HOH HOH . 
H 5 HOH A 46 95 95 HOH HOH . 
H 5 HOH A 47 96 96 HOH HOH . 
I 5 HOH B 1 19 19 HOH HOH . 
I 5 HOH B 2 21 21 HOH HOH . 
I 5 HOH B 3 28 28 HOH HOH . 
I 5 HOH B 4 30 30 HOH HOH . 
I 5 HOH B 5 32 32 HOH HOH . 
I 5 HOH B 6 33 33 HOH HOH . 
I 5 HOH B 7 34 34 HOH HOH . 
I 5 HOH B 8 35 35 HOH HOH . 
I 5 HOH B 9 38 38 HOH HOH . 
I 5 HOH B 10 39 39 HOH HOH . 
I 5 HOH B 11 41 41 HOH HOH . 
I 5 HOH B 12 44 44 HOH HOH . 
I 5 HOH B 13 46 46 HOH HOH . 
I 5 HOH B 14 49 49 HOH HOH . 
I 5 HOH B 15 50 50 HOH HOH . 
I 5 HOH B 16 51 51 HOH HOH . 
I 5 HOH B 17 52 52 HOH HOH . 
I 5 HOH B 18 53 53 HOH HOH . 
I 5 HOH B 19 54 54 HOH HOH . 
I 5 HOH B 20 56 56 HOH HOH . 
I 5 HOH B 21 58 58 HOH HOH . 
I 5 HOH B 22 59 59 HOH HOH . 
I 5 HOH B 23 61 61 HOH HOH . 
I 5 HOH B 24 62 62 HOH HOH . 
I 5 HOH B 25 65 65 HOH HOH . 
I 5 HOH B 26 66 66 HOH HOH . 
I 5 HOH B 27 68 68 HOH HOH . 
I 5 HOH B 28 71 71 HOH HOH . 
I 5 HOH B 29 76 76 HOH HOH . 
I 5 HOH B 30 82 82 HOH HOH . 
I 5 HOH B 31 83 83 HOH HOH . 
I 5 HOH B 32 94 94 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -6.582 
_atom_site.Cartn_y               -3.591 
_atom_site.Cartn_z               8.918 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        32.45 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           16 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#