data_2DEV # _model_server_result.job_id hXiY1-42BMkyizqclO7meQ _model_server_result.datetime_utc '2024-10-16 23:30:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dev # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1004}' # _entry.id 2DEV # _exptl.entry_id 2DEV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DEV _cell.length_a 65.764 _cell.length_b 65.764 _cell.length_c 204.285 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DEV _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dodecameric 12 author_and_software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 PISA trimeric 3 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1,2 C,M 2 2 B,E,I,L,O 2 1 D,J,N 3 2 A,F,G,H,K,P 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 102.1425 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 19 A GLU 19 1_555 H CS CS . A CS 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc2 A OE2 GLU 19 A GLU 19 1_555 H CS CS . A CS 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc3 H CS CS . A CS 1003 1_555 B OE1 GLU 19 B GLU 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc4 H CS CS . A CS 1003 1_555 B OE2 GLU 19 B GLU 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc5 H CS CS . A CS 1003 1_555 C OE2 GLU 19 C GLU 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc6 H CS CS . A CS 1003 1_555 C OE1 GLU 19 C GLU 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc7 H CS CS . A CS 1003 1_555 D OE2 GLU 68 D GLU 68 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 3.022 ? metalc ? metalc8 H CS CS . A CS 1003 1_555 D OE1 GLU 68 D GLU 68 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc9 D OE1 GLU 19 D GLU 19 1_555 J NA NA . D NA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc10 J NA NA . D NA 1004 1_555 E OE1 GLU 19 E GLU 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc11 J NA NA . D NA 1004 1_555 E OE2 GLU 19 E GLU 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? metalc ? metalc12 J NA NA . D NA 1004 1_555 F OE1 GLU 19 F GLU 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2DEV _atom_sites.fract_transf_matrix[1][1] 0.015206 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015206 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004895 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CL A 1 1001 1 CL CL . H 3 CS A 1 1003 3 CS CS . I 2 CL B 1 1002 2 CL CL . J 4 NA D 1 1004 4 NA NA . K 5 HOH A 1 1004 10 HOH HOH . K 5 HOH A 2 1005 18 HOH HOH . K 5 HOH A 3 1006 23 HOH HOH . K 5 HOH A 4 1007 25 HOH HOH . K 5 HOH A 5 1008 29 HOH HOH . K 5 HOH A 6 1009 34 HOH HOH . K 5 HOH A 7 1010 35 HOH HOH . K 5 HOH A 8 1011 39 HOH HOH . K 5 HOH A 9 1012 43 HOH HOH . L 5 HOH B 1 1003 2 HOH HOH . L 5 HOH B 2 1004 20 HOH HOH . L 5 HOH B 3 1005 24 HOH HOH . L 5 HOH B 4 1006 27 HOH HOH . L 5 HOH B 5 1007 40 HOH HOH . L 5 HOH B 6 1008 42 HOH HOH . L 5 HOH B 7 1009 44 HOH HOH . L 5 HOH B 8 1010 47 HOH HOH . M 5 HOH C 1 70 3 HOH HOH . M 5 HOH C 2 71 9 HOH HOH . M 5 HOH C 3 72 11 HOH HOH . M 5 HOH C 4 73 12 HOH HOH . M 5 HOH C 5 74 17 HOH HOH . M 5 HOH C 6 75 22 HOH HOH . M 5 HOH C 7 76 28 HOH HOH . M 5 HOH C 8 77 32 HOH HOH . M 5 HOH C 9 78 41 HOH HOH . N 5 HOH D 1 1005 6 HOH HOH . N 5 HOH D 2 1006 15 HOH HOH . N 5 HOH D 3 1007 26 HOH HOH . N 5 HOH D 4 1008 33 HOH HOH . N 5 HOH D 5 1009 36 HOH HOH . N 5 HOH D 6 1010 37 HOH HOH . N 5 HOH D 7 1011 46 HOH HOH . O 5 HOH E 1 70 1 HOH HOH . O 5 HOH E 2 71 13 HOH HOH . O 5 HOH E 3 72 14 HOH HOH . O 5 HOH E 4 73 30 HOH HOH . O 5 HOH E 5 74 31 HOH HOH . P 5 HOH F 1 70 4 HOH HOH . P 5 HOH F 2 71 5 HOH HOH . P 5 HOH F 3 72 7 HOH HOH . P 5 HOH F 4 73 8 HOH HOH . P 5 HOH F 5 74 16 HOH HOH . P 5 HOH F 6 75 21 HOH HOH . P 5 HOH F 7 76 38 HOH HOH . P 5 HOH F 8 77 45 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x -15.332 _atom_site.Cartn_y 20.315 _atom_site.Cartn_z 30.645 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1004 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #