data_2DEX # _model_server_result.job_id fe0cAUmUWlxaMrQe1cQfTw _model_server_result.datetime_utc '2024-11-27 23:44:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dex # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 2DEX # _exptl.entry_id 2DEX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.32 _cell.angle_gamma 90 _cell.entry_id 2DEX _cell.length_a 146.072 _cell.length_b 60.103 _cell.length_c 115.703 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DEX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 161 X ASN 153 1_555 D CA CA . X CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc2 A OD1 ASP 163 X ASP 155 1_555 D CA CA . X CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc3 A OD2 ASP 163 X ASP 155 1_555 E CA CA . X CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc4 A OD2 ASP 165 X ASP 157 1_555 D CA CA . X CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc5 A OD1 ASP 165 X ASP 157 1_555 E CA CA . X CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc6 A OD2 ASP 165 X ASP 157 1_555 E CA CA . X CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc7 A OD2 ASP 173 X ASP 165 1_555 D CA CA . X CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc8 A O ASP 173 X ASP 165 1_555 G CA CA . X CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc9 A OD1 ASP 176 X ASP 168 1_555 G CA CA . X CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc10 A O GLU 178 X GLU 170 1_555 G CA CA . X CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc11 A OD1 ASP 184 X ASP 176 1_555 D CA CA . X CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc12 A OD2 ASP 187 X ASP 179 1_555 D CA CA . X CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc13 A OD2 ASP 187 X ASP 179 1_555 E CA CA . X CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc14 A OD1 ASP 187 X ASP 179 1_555 E CA CA . X CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc15 A OE1 GLN 357 X GLN 349 1_555 C CA CA . X CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc16 A OE1 GLU 359 X GLU 351 1_555 F CA CA . X CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc17 A OE1 GLU 361 X GLU 353 1_555 C CA CA . X CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc18 A OD1 ASP 377 X ASP 369 1_555 F CA CA . X CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc19 A O SER 378 X SER 370 1_555 F CA CA . X CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc20 A OD1 ASN 381 X ASN 373 1_555 F CA CA . X CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc21 A OD1 ASP 396 X ASP 388 1_555 E CA CA . X CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc22 A O PHE 415 X PHE 407 1_555 C CA CA . X CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc23 A O LEU 418 X LEU 410 1_555 C CA CA . X CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc24 A OE1 GLU 419 X GLU 411 1_555 C CA CA . X CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc25 C CA CA . X CA 900 1_555 K O HOH . X HOH 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc26 C CA CA . X CA 900 1_555 K O HOH . X HOH 934 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc27 E CA CA . X CA 902 1_555 K O HOH . X HOH 1045 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc28 F CA CA . X CA 903 1_555 K O HOH . X HOH 1096 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc29 G CA CA . X CA 904 1_555 K O HOH . X HOH 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc30 G CA CA . X CA 904 1_555 K O HOH . X HOH 958 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2DEX _atom_sites.fract_transf_matrix[1][1] 0.006846 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004674 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016638 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA X 1 900 900 CA CA . D 3 CA X 1 901 901 CA CA . E 3 CA X 1 902 902 CA CA . F 3 CA X 1 903 903 CA CA . G 3 CA X 1 904 904 CA CA . H 4 SO4 X 1 905 905 SO4 SO4 . I 4 SO4 X 1 906 906 SO4 SO4 . J 4 SO4 X 1 907 907 SO4 SO4 . K 5 HOH X 1 908 1 HOH HOH . K 5 HOH X 2 909 2 HOH HOH . K 5 HOH X 3 910 3 HOH HOH . K 5 HOH X 4 911 4 HOH HOH . K 5 HOH X 5 912 5 HOH HOH . K 5 HOH X 6 913 6 HOH HOH . K 5 HOH X 7 914 7 HOH HOH . K 5 HOH X 8 915 8 HOH HOH . K 5 HOH X 9 916 9 HOH HOH . K 5 HOH X 10 917 10 HOH HOH . K 5 HOH X 11 918 11 HOH HOH . K 5 HOH X 12 919 12 HOH HOH . K 5 HOH X 13 920 13 HOH HOH . K 5 HOH X 14 921 14 HOH HOH . K 5 HOH X 15 922 15 HOH HOH . K 5 HOH X 16 923 16 HOH HOH . K 5 HOH X 17 924 17 HOH HOH . K 5 HOH X 18 925 18 HOH HOH . K 5 HOH X 19 926 19 HOH HOH . K 5 HOH X 20 927 20 HOH HOH . K 5 HOH X 21 928 21 HOH HOH . K 5 HOH X 22 929 22 HOH HOH . K 5 HOH X 23 930 23 HOH HOH . K 5 HOH X 24 931 24 HOH HOH . K 5 HOH X 25 932 25 HOH HOH . K 5 HOH X 26 933 26 HOH HOH . K 5 HOH X 27 934 27 HOH HOH . K 5 HOH X 28 935 28 HOH HOH . K 5 HOH X 29 936 29 HOH HOH . K 5 HOH X 30 937 30 HOH HOH . K 5 HOH X 31 938 31 HOH HOH . K 5 HOH X 32 939 32 HOH HOH . K 5 HOH X 33 940 33 HOH HOH . K 5 HOH X 34 941 34 HOH HOH . K 5 HOH X 35 942 35 HOH HOH . K 5 HOH X 36 943 36 HOH HOH . K 5 HOH X 37 944 37 HOH HOH . K 5 HOH X 38 945 38 HOH HOH . K 5 HOH X 39 946 39 HOH HOH . K 5 HOH X 40 947 40 HOH HOH . K 5 HOH X 41 948 41 HOH HOH . K 5 HOH X 42 949 42 HOH HOH . K 5 HOH X 43 950 43 HOH HOH . K 5 HOH X 44 951 44 HOH HOH . K 5 HOH X 45 952 45 HOH HOH . K 5 HOH X 46 953 46 HOH HOH . K 5 HOH X 47 954 47 HOH HOH . K 5 HOH X 48 955 48 HOH HOH . K 5 HOH X 49 956 49 HOH HOH . K 5 HOH X 50 957 50 HOH HOH . K 5 HOH X 51 958 51 HOH HOH . K 5 HOH X 52 959 52 HOH HOH . K 5 HOH X 53 960 53 HOH HOH . K 5 HOH X 54 961 54 HOH HOH . K 5 HOH X 55 962 55 HOH HOH . K 5 HOH X 56 963 56 HOH HOH . K 5 HOH X 57 964 57 HOH HOH . K 5 HOH X 58 965 58 HOH HOH . K 5 HOH X 59 966 59 HOH HOH . K 5 HOH X 60 967 60 HOH HOH . K 5 HOH X 61 968 61 HOH HOH . K 5 HOH X 62 969 62 HOH HOH . K 5 HOH X 63 970 63 HOH HOH . K 5 HOH X 64 971 64 HOH HOH . K 5 HOH X 65 972 65 HOH HOH . K 5 HOH X 66 973 66 HOH HOH . K 5 HOH X 67 974 67 HOH HOH . K 5 HOH X 68 975 68 HOH HOH . K 5 HOH X 69 976 69 HOH HOH . K 5 HOH X 70 977 70 HOH HOH . K 5 HOH X 71 978 71 HOH HOH . K 5 HOH X 72 979 72 HOH HOH . K 5 HOH X 73 980 73 HOH HOH . K 5 HOH X 74 981 74 HOH HOH . K 5 HOH X 75 982 75 HOH HOH . K 5 HOH X 76 983 76 HOH HOH . K 5 HOH X 77 984 77 HOH HOH . K 5 HOH X 78 985 78 HOH HOH . K 5 HOH X 79 986 79 HOH HOH . K 5 HOH X 80 987 80 HOH HOH . K 5 HOH X 81 988 81 HOH HOH . K 5 HOH X 82 989 82 HOH HOH . K 5 HOH X 83 990 83 HOH HOH . K 5 HOH X 84 991 84 HOH HOH . K 5 HOH X 85 992 85 HOH HOH . K 5 HOH X 86 993 86 HOH HOH . K 5 HOH X 87 994 88 HOH HOH . K 5 HOH X 88 995 89 HOH HOH . K 5 HOH X 89 996 90 HOH HOH . K 5 HOH X 90 997 91 HOH HOH . K 5 HOH X 91 998 92 HOH HOH . K 5 HOH X 92 999 93 HOH HOH . K 5 HOH X 93 1000 94 HOH HOH . K 5 HOH X 94 1001 95 HOH HOH . K 5 HOH X 95 1002 96 HOH HOH . K 5 HOH X 96 1003 97 HOH HOH . K 5 HOH X 97 1004 98 HOH HOH . K 5 HOH X 98 1005 99 HOH HOH . K 5 HOH X 99 1006 100 HOH HOH . K 5 HOH X 100 1007 101 HOH HOH . K 5 HOH X 101 1008 102 HOH HOH . K 5 HOH X 102 1009 103 HOH HOH . K 5 HOH X 103 1010 104 HOH HOH . K 5 HOH X 104 1011 105 HOH HOH . K 5 HOH X 105 1012 106 HOH HOH . K 5 HOH X 106 1013 107 HOH HOH . K 5 HOH X 107 1014 108 HOH HOH . K 5 HOH X 108 1015 109 HOH HOH . K 5 HOH X 109 1016 110 HOH HOH . K 5 HOH X 110 1017 111 HOH HOH . K 5 HOH X 111 1018 112 HOH HOH . K 5 HOH X 112 1019 113 HOH HOH . K 5 HOH X 113 1020 114 HOH HOH . K 5 HOH X 114 1021 115 HOH HOH . K 5 HOH X 115 1022 116 HOH HOH . K 5 HOH X 116 1023 117 HOH HOH . K 5 HOH X 117 1024 118 HOH HOH . K 5 HOH X 118 1025 119 HOH HOH . K 5 HOH X 119 1026 120 HOH HOH . K 5 HOH X 120 1027 121 HOH HOH . K 5 HOH X 121 1028 122 HOH HOH . K 5 HOH X 122 1029 123 HOH HOH . K 5 HOH X 123 1030 124 HOH HOH . K 5 HOH X 124 1031 125 HOH HOH . K 5 HOH X 125 1032 126 HOH HOH . K 5 HOH X 126 1033 127 HOH HOH . K 5 HOH X 127 1034 128 HOH HOH . K 5 HOH X 128 1035 129 HOH HOH . K 5 HOH X 129 1036 130 HOH HOH . K 5 HOH X 130 1037 131 HOH HOH . K 5 HOH X 131 1038 132 HOH HOH . K 5 HOH X 132 1039 133 HOH HOH . K 5 HOH X 133 1040 134 HOH HOH . K 5 HOH X 134 1041 135 HOH HOH . K 5 HOH X 135 1042 136 HOH HOH . K 5 HOH X 136 1043 137 HOH HOH . K 5 HOH X 137 1044 138 HOH HOH . K 5 HOH X 138 1045 139 HOH HOH . K 5 HOH X 139 1046 140 HOH HOH . K 5 HOH X 140 1047 141 HOH HOH . K 5 HOH X 141 1048 142 HOH HOH . K 5 HOH X 142 1049 143 HOH HOH . K 5 HOH X 143 1050 144 HOH HOH . K 5 HOH X 144 1051 145 HOH HOH . K 5 HOH X 145 1052 146 HOH HOH . K 5 HOH X 146 1053 147 HOH HOH . K 5 HOH X 147 1054 148 HOH HOH . K 5 HOH X 148 1055 149 HOH HOH . K 5 HOH X 149 1056 150 HOH HOH . K 5 HOH X 150 1057 151 HOH HOH . K 5 HOH X 151 1058 152 HOH HOH . K 5 HOH X 152 1059 153 HOH HOH . K 5 HOH X 153 1060 154 HOH HOH . K 5 HOH X 154 1061 155 HOH HOH . K 5 HOH X 155 1062 156 HOH HOH . K 5 HOH X 156 1063 157 HOH HOH . K 5 HOH X 157 1064 158 HOH HOH . K 5 HOH X 158 1065 159 HOH HOH . K 5 HOH X 159 1066 160 HOH HOH . K 5 HOH X 160 1067 161 HOH HOH . K 5 HOH X 161 1068 162 HOH HOH . K 5 HOH X 162 1069 163 HOH HOH . K 5 HOH X 163 1070 164 HOH HOH . K 5 HOH X 164 1071 165 HOH HOH . K 5 HOH X 165 1072 166 HOH HOH . K 5 HOH X 166 1073 167 HOH HOH . K 5 HOH X 167 1074 168 HOH HOH . K 5 HOH X 168 1075 169 HOH HOH . K 5 HOH X 169 1076 170 HOH HOH . K 5 HOH X 170 1077 171 HOH HOH . K 5 HOH X 171 1078 172 HOH HOH . K 5 HOH X 172 1079 173 HOH HOH . K 5 HOH X 173 1080 174 HOH HOH . K 5 HOH X 174 1081 175 HOH HOH . K 5 HOH X 175 1082 176 HOH HOH . K 5 HOH X 176 1083 177 HOH HOH . K 5 HOH X 177 1084 178 HOH HOH . K 5 HOH X 178 1085 179 HOH HOH . K 5 HOH X 179 1086 180 HOH HOH . K 5 HOH X 180 1087 181 HOH HOH . K 5 HOH X 181 1088 182 HOH HOH . K 5 HOH X 182 1089 183 HOH HOH . K 5 HOH X 183 1090 184 HOH HOH . K 5 HOH X 184 1091 185 HOH HOH . K 5 HOH X 185 1092 186 HOH HOH . K 5 HOH X 186 1093 187 HOH HOH . K 5 HOH X 187 1094 189 HOH HOH . K 5 HOH X 188 1095 190 HOH HOH . K 5 HOH X 189 1096 191 HOH HOH . K 5 HOH X 190 1097 192 HOH HOH . L 5 HOH A 1 87 87 HOH HOH . L 5 HOH A 2 188 188 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 24.406 _atom_site.Cartn_y 42.513 _atom_site.Cartn_z -11.448 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 61.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 901 _atom_site.auth_asym_id X _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #