data_2DEY
#
_model_server_result.job_id            GgUNl5mIcbvtzkOmni8Wlg 
_model_server_result.datetime_utc      '2024-11-30 19:57:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2dey 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":903}' 
#
_entry.id    2DEY 
#
_exptl.entry_id    2DEY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          124.18 
_cell.angle_gamma         90 
_cell.entry_id            2DEY 
_cell.length_a            146.192 
_cell.length_b            60.611 
_cell.length_c            115.203 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2DEY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ACE 1 A ACE 0 1_555 B N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
metalc ? metalc1 A OD1 ASN 161 X ASN 153 1_555 D CA CA . X CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc2 A OD1 ASP 163 X ASP 155 1_555 D CA CA . X CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc3 A OD2 ASP 163 X ASP 155 1_555 E CA CA . X CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? 
metalc ? metalc4 A OD2 ASP 165 X ASP 157 1_555 D CA CA . X CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? 
metalc ? metalc5 A OD1 ASP 165 X ASP 157 1_555 E CA CA . X CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? 
metalc ? metalc6 A OD2 ASP 165 X ASP 157 1_555 E CA CA . X CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
metalc ? metalc7 A OD2 ASP 173 X ASP 165 1_555 D CA CA . X CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc8 A O ASP 173 X ASP 165 1_555 G CA CA . X CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc9 A OD1 ASP 176 X ASP 168 1_555 G CA CA . X CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc10 A O GLU 178 X GLU 170 1_555 G CA CA . X CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc11 A OD1 ASP 184 X ASP 176 1_555 D CA CA . X CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc12 A OD2 ASP 187 X ASP 179 1_555 D CA CA . X CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc13 A OD1 ASP 187 X ASP 179 1_555 E CA CA . X CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
metalc ? metalc14 A OD2 ASP 187 X ASP 179 1_555 E CA CA . X CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc15 A OE1 GLN 357 X GLN 349 1_555 C CA CA . X CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc16 A OE1 GLU 359 X GLU 351 1_555 F CA CA . X CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? 
metalc ? metalc17 A OE1 GLU 361 X GLU 353 1_555 C CA CA . X CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc18 A OD1 ASP 377 X ASP 369 1_555 F CA CA . X CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
metalc ? metalc19 A O SER 378 X SER 370 1_555 F CA CA . X CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc20 A OD1 ASN 381 X ASN 373 1_555 F CA CA . X CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc21 A OD1 ASP 396 X ASP 388 1_555 E CA CA . X CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc22 A O PHE 415 X PHE 407 1_555 C CA CA . X CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc23 A O LEU 418 X LEU 410 1_555 C CA CA . X CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc24 A OE1 GLU 419 X GLU 411 1_555 C CA CA . X CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc25 C CA CA . X CA 900 1_555 K O HOH . X HOH 928 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc26 C CA CA . X CA 900 1_555 K O HOH . X HOH 1034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc27 E CA CA . X CA 902 1_555 K O HOH . X HOH 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc28 F CA CA . X CA 903 1_555 K O HOH . X HOH 1040 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc29 F CA CA . X CA 903 1_555 K O HOH . X HOH 1058 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
metalc ? metalc30 G CA CA . X CA 904 1_555 K O HOH . X HOH 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc31 G CA CA . X CA 904 1_555 K O HOH . X HOH 1028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2DEY 
_atom_sites.fract_transf_matrix[1][1]    0.00684 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004644 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016499 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010492 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CA X 1 900 900 CA CA . 
D 3 CA X 1 901 901 CA CA . 
E 3 CA X 1 902 902 CA CA . 
F 3 CA X 1 903 903 CA CA . 
G 3 CA X 1 904 904 CA CA . 
H 4 SO4 X 1 905 905 SO4 SO4 . 
I 4 SO4 X 1 906 906 SO4 SO4 . 
J 4 SO4 X 1 907 907 SO4 SO4 . 
K 5 HOH X 1 908 1 HOH HOH . 
K 5 HOH X 2 909 2 HOH HOH . 
K 5 HOH X 3 910 3 HOH HOH . 
K 5 HOH X 4 911 4 HOH HOH . 
K 5 HOH X 5 912 5 HOH HOH . 
K 5 HOH X 6 913 6 HOH HOH . 
K 5 HOH X 7 914 7 HOH HOH . 
K 5 HOH X 8 915 8 HOH HOH . 
K 5 HOH X 9 916 9 HOH HOH . 
K 5 HOH X 10 917 10 HOH HOH . 
K 5 HOH X 11 918 11 HOH HOH . 
K 5 HOH X 12 919 12 HOH HOH . 
K 5 HOH X 13 920 13 HOH HOH . 
K 5 HOH X 14 921 14 HOH HOH . 
K 5 HOH X 15 922 15 HOH HOH . 
K 5 HOH X 16 923 16 HOH HOH . 
K 5 HOH X 17 924 17 HOH HOH . 
K 5 HOH X 18 925 18 HOH HOH . 
K 5 HOH X 19 926 19 HOH HOH . 
K 5 HOH X 20 927 20 HOH HOH . 
K 5 HOH X 21 928 21 HOH HOH . 
K 5 HOH X 22 929 22 HOH HOH . 
K 5 HOH X 23 930 23 HOH HOH . 
K 5 HOH X 24 931 24 HOH HOH . 
K 5 HOH X 25 932 25 HOH HOH . 
K 5 HOH X 26 933 26 HOH HOH . 
K 5 HOH X 27 934 27 HOH HOH . 
K 5 HOH X 28 935 28 HOH HOH . 
K 5 HOH X 29 936 29 HOH HOH . 
K 5 HOH X 30 937 30 HOH HOH . 
K 5 HOH X 31 938 31 HOH HOH . 
K 5 HOH X 32 939 32 HOH HOH . 
K 5 HOH X 33 940 33 HOH HOH . 
K 5 HOH X 34 941 34 HOH HOH . 
K 5 HOH X 35 942 35 HOH HOH . 
K 5 HOH X 36 943 36 HOH HOH . 
K 5 HOH X 37 944 37 HOH HOH . 
K 5 HOH X 38 945 38 HOH HOH . 
K 5 HOH X 39 946 39 HOH HOH . 
K 5 HOH X 40 947 40 HOH HOH . 
K 5 HOH X 41 948 41 HOH HOH . 
K 5 HOH X 42 949 42 HOH HOH . 
K 5 HOH X 43 950 43 HOH HOH . 
K 5 HOH X 44 951 44 HOH HOH . 
K 5 HOH X 45 952 45 HOH HOH . 
K 5 HOH X 46 953 46 HOH HOH . 
K 5 HOH X 47 954 47 HOH HOH . 
K 5 HOH X 48 955 48 HOH HOH . 
K 5 HOH X 49 956 49 HOH HOH . 
K 5 HOH X 50 957 50 HOH HOH . 
K 5 HOH X 51 958 51 HOH HOH . 
K 5 HOH X 52 959 52 HOH HOH . 
K 5 HOH X 53 960 53 HOH HOH . 
K 5 HOH X 54 961 54 HOH HOH . 
K 5 HOH X 55 962 55 HOH HOH . 
K 5 HOH X 56 963 56 HOH HOH . 
K 5 HOH X 57 964 57 HOH HOH . 
K 5 HOH X 58 965 58 HOH HOH . 
K 5 HOH X 59 966 59 HOH HOH . 
K 5 HOH X 60 967 60 HOH HOH . 
K 5 HOH X 61 968 61 HOH HOH . 
K 5 HOH X 62 969 62 HOH HOH . 
K 5 HOH X 63 970 63 HOH HOH . 
K 5 HOH X 64 971 64 HOH HOH . 
K 5 HOH X 65 972 65 HOH HOH . 
K 5 HOH X 66 973 66 HOH HOH . 
K 5 HOH X 67 974 67 HOH HOH . 
K 5 HOH X 68 975 68 HOH HOH . 
K 5 HOH X 69 976 69 HOH HOH . 
K 5 HOH X 70 977 70 HOH HOH . 
K 5 HOH X 71 978 71 HOH HOH . 
K 5 HOH X 72 979 72 HOH HOH . 
K 5 HOH X 73 980 73 HOH HOH . 
K 5 HOH X 74 981 74 HOH HOH . 
K 5 HOH X 75 982 75 HOH HOH . 
K 5 HOH X 76 983 76 HOH HOH . 
K 5 HOH X 77 984 77 HOH HOH . 
K 5 HOH X 78 985 78 HOH HOH . 
K 5 HOH X 79 986 79 HOH HOH . 
K 5 HOH X 80 987 80 HOH HOH . 
K 5 HOH X 81 988 81 HOH HOH . 
K 5 HOH X 82 989 82 HOH HOH . 
K 5 HOH X 83 990 83 HOH HOH . 
K 5 HOH X 84 991 84 HOH HOH . 
K 5 HOH X 85 992 85 HOH HOH . 
K 5 HOH X 86 993 86 HOH HOH . 
K 5 HOH X 87 994 87 HOH HOH . 
K 5 HOH X 88 995 88 HOH HOH . 
K 5 HOH X 89 996 89 HOH HOH . 
K 5 HOH X 90 997 90 HOH HOH . 
K 5 HOH X 91 998 91 HOH HOH . 
K 5 HOH X 92 999 92 HOH HOH . 
K 5 HOH X 93 1000 93 HOH HOH . 
K 5 HOH X 94 1001 94 HOH HOH . 
K 5 HOH X 95 1002 95 HOH HOH . 
K 5 HOH X 96 1003 96 HOH HOH . 
K 5 HOH X 97 1004 97 HOH HOH . 
K 5 HOH X 98 1005 98 HOH HOH . 
K 5 HOH X 99 1006 99 HOH HOH . 
K 5 HOH X 100 1007 100 HOH HOH . 
K 5 HOH X 101 1008 101 HOH HOH . 
K 5 HOH X 102 1009 102 HOH HOH . 
K 5 HOH X 103 1010 103 HOH HOH . 
K 5 HOH X 104 1011 104 HOH HOH . 
K 5 HOH X 105 1012 105 HOH HOH . 
K 5 HOH X 106 1013 106 HOH HOH . 
K 5 HOH X 107 1014 107 HOH HOH . 
K 5 HOH X 108 1015 108 HOH HOH . 
K 5 HOH X 109 1016 109 HOH HOH . 
K 5 HOH X 110 1017 110 HOH HOH . 
K 5 HOH X 111 1018 111 HOH HOH . 
K 5 HOH X 112 1019 112 HOH HOH . 
K 5 HOH X 113 1020 113 HOH HOH . 
K 5 HOH X 114 1021 114 HOH HOH . 
K 5 HOH X 115 1022 115 HOH HOH . 
K 5 HOH X 116 1023 116 HOH HOH . 
K 5 HOH X 117 1024 117 HOH HOH . 
K 5 HOH X 118 1025 118 HOH HOH . 
K 5 HOH X 119 1026 119 HOH HOH . 
K 5 HOH X 120 1027 120 HOH HOH . 
K 5 HOH X 121 1028 121 HOH HOH . 
K 5 HOH X 122 1029 122 HOH HOH . 
K 5 HOH X 123 1030 123 HOH HOH . 
K 5 HOH X 124 1031 124 HOH HOH . 
K 5 HOH X 125 1032 125 HOH HOH . 
K 5 HOH X 126 1033 126 HOH HOH . 
K 5 HOH X 127 1034 127 HOH HOH . 
K 5 HOH X 128 1035 128 HOH HOH . 
K 5 HOH X 129 1036 129 HOH HOH . 
K 5 HOH X 130 1037 130 HOH HOH . 
K 5 HOH X 131 1038 131 HOH HOH . 
K 5 HOH X 132 1039 132 HOH HOH . 
K 5 HOH X 133 1040 133 HOH HOH . 
K 5 HOH X 134 1041 134 HOH HOH . 
K 5 HOH X 135 1042 135 HOH HOH . 
K 5 HOH X 136 1043 136 HOH HOH . 
K 5 HOH X 137 1044 137 HOH HOH . 
K 5 HOH X 138 1045 138 HOH HOH . 
K 5 HOH X 139 1046 139 HOH HOH . 
K 5 HOH X 140 1047 140 HOH HOH . 
K 5 HOH X 141 1048 141 HOH HOH . 
K 5 HOH X 142 1049 142 HOH HOH . 
K 5 HOH X 143 1050 143 HOH HOH . 
K 5 HOH X 144 1051 144 HOH HOH . 
K 5 HOH X 145 1052 145 HOH HOH . 
K 5 HOH X 146 1053 146 HOH HOH . 
K 5 HOH X 147 1054 147 HOH HOH . 
K 5 HOH X 148 1055 148 HOH HOH . 
K 5 HOH X 149 1056 149 HOH HOH . 
K 5 HOH X 150 1057 150 HOH HOH . 
K 5 HOH X 151 1058 151 HOH HOH . 
K 5 HOH X 152 1059 152 HOH HOH . 
K 5 HOH X 153 1060 153 HOH HOH . 
K 5 HOH X 154 1061 154 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               20.327 
_atom_site.Cartn_y               51.748 
_atom_site.Cartn_z               7.518 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        52.92 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           903 
_atom_site.auth_asym_id          X 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#