data_2DF4
#
_model_server_result.job_id            pL-qhRMDqPeneG4qmJyOCA 
_model_server_result.datetime_utc      '2024-10-19 08:25:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2df4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    2DF4 
#
_exptl.entry_id    2DF4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2DF4 
_cell.length_a            71.019 
_cell.length_b            91.654 
_cell.length_c            181.302 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2DF4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OE2 GLU 10 B GLU 10 1_555 E MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc2 B NE2 HIS 12 B HIS 12 1_555 D MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc3 B OE1 GLU 124 B GLU 124 1_555 D MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc4 B OE2 GLU 124 B GLU 124 1_555 D MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
metalc ? metalc5 B OE1 GLU 150 B GLU 150 1_555 D MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2DF4 
_atom_sites.fract_transf_matrix[1][1]    0.014081 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010911 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005516 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 MN B 1 501 501 MN MN . 
E 4 MN B 1 502 502 MN MN . 
F 5 HOH A 1 486 1 HOH HOH . 
F 5 HOH A 2 487 6 HOH HOH . 
F 5 HOH A 3 488 7 HOH HOH . 
F 5 HOH A 4 489 9 HOH HOH . 
F 5 HOH A 5 490 11 HOH HOH . 
F 5 HOH A 6 491 12 HOH HOH . 
F 5 HOH A 7 492 15 HOH HOH . 
F 5 HOH A 8 493 16 HOH HOH . 
F 5 HOH A 9 494 17 HOH HOH . 
F 5 HOH A 10 495 19 HOH HOH . 
F 5 HOH A 11 496 21 HOH HOH . 
F 5 HOH A 12 497 22 HOH HOH . 
F 5 HOH A 13 498 23 HOH HOH . 
F 5 HOH A 14 499 25 HOH HOH . 
F 5 HOH A 15 500 26 HOH HOH . 
F 5 HOH A 16 501 29 HOH HOH . 
F 5 HOH A 17 502 31 HOH HOH . 
F 5 HOH A 18 503 35 HOH HOH . 
F 5 HOH A 19 504 37 HOH HOH . 
F 5 HOH A 20 505 41 HOH HOH . 
F 5 HOH A 21 506 43 HOH HOH . 
F 5 HOH A 22 507 49 HOH HOH . 
F 5 HOH A 23 508 50 HOH HOH . 
F 5 HOH A 24 509 53 HOH HOH . 
F 5 HOH A 25 510 55 HOH HOH . 
F 5 HOH A 26 511 57 HOH HOH . 
F 5 HOH A 27 512 59 HOH HOH . 
F 5 HOH A 28 513 61 HOH HOH . 
F 5 HOH A 29 514 70 HOH HOH . 
F 5 HOH A 30 515 85 HOH HOH . 
F 5 HOH A 31 516 88 HOH HOH . 
G 5 HOH B 1 503 2 HOH HOH . 
G 5 HOH B 2 504 3 HOH HOH . 
G 5 HOH B 3 505 4 HOH HOH . 
G 5 HOH B 4 506 5 HOH HOH . 
G 5 HOH B 5 507 8 HOH HOH . 
G 5 HOH B 6 508 10 HOH HOH . 
G 5 HOH B 7 509 14 HOH HOH . 
G 5 HOH B 8 510 18 HOH HOH . 
G 5 HOH B 9 511 20 HOH HOH . 
G 5 HOH B 10 512 24 HOH HOH . 
G 5 HOH B 11 513 27 HOH HOH . 
G 5 HOH B 12 514 28 HOH HOH . 
G 5 HOH B 13 515 32 HOH HOH . 
G 5 HOH B 14 516 34 HOH HOH . 
G 5 HOH B 15 517 36 HOH HOH . 
G 5 HOH B 16 518 38 HOH HOH . 
G 5 HOH B 17 519 39 HOH HOH . 
G 5 HOH B 18 520 40 HOH HOH . 
G 5 HOH B 19 521 44 HOH HOH . 
G 5 HOH B 20 522 45 HOH HOH . 
G 5 HOH B 21 523 46 HOH HOH . 
G 5 HOH B 22 524 51 HOH HOH . 
G 5 HOH B 23 525 52 HOH HOH . 
G 5 HOH B 24 526 54 HOH HOH . 
G 5 HOH B 25 527 56 HOH HOH . 
G 5 HOH B 26 528 58 HOH HOH . 
G 5 HOH B 27 529 60 HOH HOH . 
G 5 HOH B 28 530 62 HOH HOH . 
G 5 HOH B 29 531 64 HOH HOH . 
G 5 HOH B 30 532 67 HOH HOH . 
G 5 HOH B 31 533 68 HOH HOH . 
G 5 HOH B 32 534 69 HOH HOH . 
G 5 HOH B 33 535 71 HOH HOH . 
G 5 HOH B 34 536 72 HOH HOH . 
G 5 HOH B 35 537 74 HOH HOH . 
G 5 HOH B 36 538 76 HOH HOH . 
G 5 HOH B 37 539 77 HOH HOH . 
G 5 HOH B 38 540 79 HOH HOH . 
G 5 HOH B 39 541 80 HOH HOH . 
G 5 HOH B 40 542 81 HOH HOH . 
G 5 HOH B 41 543 82 HOH HOH . 
G 5 HOH B 42 544 83 HOH HOH . 
G 5 HOH B 43 545 84 HOH HOH . 
G 5 HOH B 44 546 87 HOH HOH . 
H 5 HOH C 1 101 13 HOH HOH . 
H 5 HOH C 2 102 30 HOH HOH . 
H 5 HOH C 3 103 33 HOH HOH . 
H 5 HOH C 4 104 42 HOH HOH . 
H 5 HOH C 5 105 47 HOH HOH . 
H 5 HOH C 6 106 48 HOH HOH . 
H 5 HOH C 7 107 63 HOH HOH . 
H 5 HOH C 8 108 65 HOH HOH . 
H 5 HOH C 9 109 66 HOH HOH . 
H 5 HOH C 10 110 73 HOH HOH . 
H 5 HOH C 11 111 75 HOH HOH . 
H 5 HOH C 12 112 78 HOH HOH . 
H 5 HOH C 13 113 86 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               21.397 
_atom_site.Cartn_y               42.878 
_atom_site.Cartn_z               8.998 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        43.28 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#