data_2DFB # _model_server_result.job_id 1M35Zx0HhUAFqnK8H2I5Aw _model_server_result.datetime_utc '2024-11-28 23:27:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":193}' # _entry.id 2DFB # _exptl.entry_id 2DFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DFB _cell.length_a 48.97 _cell.length_b 58.51 _cell.length_c 69.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id PCA _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id PCA _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id THR _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id THR _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.329 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2DFB _atom_sites.fract_transf_matrix[1][1] 0.020421 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017091 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 191 191 SO4 SO4 . C 3 IOD A 1 192 192 IOD IOD . D 3 IOD A 1 193 193 IOD IOD . E 3 IOD A 1 194 194 IOD IOD . F 3 IOD A 1 195 195 IOD IOD . G 3 IOD A 1 196 196 IOD IOD . H 3 IOD A 1 197 197 IOD IOD . I 4 HOH A 1 198 198 HOH HOH . I 4 HOH A 2 199 199 HOH HOH . I 4 HOH A 3 200 200 HOH HOH . I 4 HOH A 4 201 201 HOH HOH . I 4 HOH A 5 202 202 HOH HOH . I 4 HOH A 6 203 203 HOH HOH . I 4 HOH A 7 204 204 HOH HOH . I 4 HOH A 8 205 205 HOH HOH . I 4 HOH A 9 206 206 HOH HOH . I 4 HOH A 10 207 207 HOH HOH . I 4 HOH A 11 208 208 HOH HOH . I 4 HOH A 12 209 209 HOH HOH . I 4 HOH A 13 210 210 HOH HOH . I 4 HOH A 14 211 211 HOH HOH . I 4 HOH A 15 212 212 HOH HOH . I 4 HOH A 16 213 213 HOH HOH . I 4 HOH A 17 214 214 HOH HOH . I 4 HOH A 18 215 215 HOH HOH . I 4 HOH A 19 216 216 HOH HOH . I 4 HOH A 20 217 217 HOH HOH . I 4 HOH A 21 218 218 HOH HOH . I 4 HOH A 22 219 219 HOH HOH . I 4 HOH A 23 220 220 HOH HOH . I 4 HOH A 24 221 221 HOH HOH . I 4 HOH A 25 222 222 HOH HOH . I 4 HOH A 26 223 223 HOH HOH . I 4 HOH A 27 224 224 HOH HOH . I 4 HOH A 28 225 225 HOH HOH . I 4 HOH A 29 226 226 HOH HOH . I 4 HOH A 30 227 227 HOH HOH . I 4 HOH A 31 228 228 HOH HOH . I 4 HOH A 32 229 229 HOH HOH . I 4 HOH A 33 230 230 HOH HOH . I 4 HOH A 34 231 231 HOH HOH . I 4 HOH A 35 232 232 HOH HOH . I 4 HOH A 36 233 233 HOH HOH . I 4 HOH A 37 234 234 HOH HOH . I 4 HOH A 38 235 235 HOH HOH . I 4 HOH A 39 236 236 HOH HOH . I 4 HOH A 40 237 237 HOH HOH . I 4 HOH A 41 238 238 HOH HOH . I 4 HOH A 42 239 239 HOH HOH . I 4 HOH A 43 240 240 HOH HOH . I 4 HOH A 44 241 241 HOH HOH . I 4 HOH A 45 242 242 HOH HOH . I 4 HOH A 46 243 243 HOH HOH . I 4 HOH A 47 244 244 HOH HOH . I 4 HOH A 48 245 245 HOH HOH . I 4 HOH A 49 246 246 HOH HOH . I 4 HOH A 50 247 247 HOH HOH . I 4 HOH A 51 248 248 HOH HOH . I 4 HOH A 52 249 249 HOH HOH . I 4 HOH A 53 250 250 HOH HOH . I 4 HOH A 54 251 251 HOH HOH . I 4 HOH A 55 252 252 HOH HOH . I 4 HOH A 56 253 253 HOH HOH . I 4 HOH A 57 254 254 HOH HOH . I 4 HOH A 58 255 255 HOH HOH . I 4 HOH A 59 256 256 HOH HOH . I 4 HOH A 60 257 257 HOH HOH . I 4 HOH A 61 258 258 HOH HOH . I 4 HOH A 62 259 259 HOH HOH . I 4 HOH A 63 260 260 HOH HOH . I 4 HOH A 64 261 261 HOH HOH . I 4 HOH A 65 262 262 HOH HOH . I 4 HOH A 66 263 263 HOH HOH . I 4 HOH A 67 264 264 HOH HOH . I 4 HOH A 68 265 265 HOH HOH . I 4 HOH A 69 266 266 HOH HOH . I 4 HOH A 70 267 267 HOH HOH . I 4 HOH A 71 268 268 HOH HOH . I 4 HOH A 72 269 269 HOH HOH . I 4 HOH A 73 270 270 HOH HOH . I 4 HOH A 74 271 271 HOH HOH . I 4 HOH A 75 272 272 HOH HOH . I 4 HOH A 76 273 273 HOH HOH . I 4 HOH A 77 274 274 HOH HOH . I 4 HOH A 78 275 275 HOH HOH . I 4 HOH A 79 276 276 HOH HOH . I 4 HOH A 80 277 277 HOH HOH . I 4 HOH A 81 278 278 HOH HOH . I 4 HOH A 82 279 279 HOH HOH . I 4 HOH A 83 280 280 HOH HOH . I 4 HOH A 84 281 281 HOH HOH . I 4 HOH A 85 282 282 HOH HOH . I 4 HOH A 86 283 283 HOH HOH . I 4 HOH A 87 284 284 HOH HOH . I 4 HOH A 88 285 285 HOH HOH . I 4 HOH A 89 286 286 HOH HOH . I 4 HOH A 90 287 287 HOH HOH . I 4 HOH A 91 288 288 HOH HOH . I 4 HOH A 92 289 289 HOH HOH . I 4 HOH A 93 290 290 HOH HOH . I 4 HOH A 94 291 291 HOH HOH . I 4 HOH A 95 292 292 HOH HOH . I 4 HOH A 96 293 293 HOH HOH . I 4 HOH A 97 294 294 HOH HOH . I 4 HOH A 98 295 295 HOH HOH . I 4 HOH A 99 296 296 HOH HOH . I 4 HOH A 100 297 297 HOH HOH . I 4 HOH A 101 298 298 HOH HOH . I 4 HOH A 102 299 299 HOH HOH . I 4 HOH A 103 300 300 HOH HOH . I 4 HOH A 104 301 301 HOH HOH . I 4 HOH A 105 302 302 HOH HOH . I 4 HOH A 106 303 303 HOH HOH . I 4 HOH A 107 304 304 HOH HOH . I 4 HOH A 108 305 305 HOH HOH . I 4 HOH A 109 306 306 HOH HOH . I 4 HOH A 110 307 307 HOH HOH . I 4 HOH A 111 308 308 HOH HOH . I 4 HOH A 112 309 309 HOH HOH . I 4 HOH A 113 310 310 HOH HOH . I 4 HOH A 114 311 311 HOH HOH . I 4 HOH A 115 312 312 HOH HOH . I 4 HOH A 116 313 313 HOH HOH . I 4 HOH A 117 314 314 HOH HOH . I 4 HOH A 118 315 315 HOH HOH . I 4 HOH A 119 316 316 HOH HOH . I 4 HOH A 120 317 317 HOH HOH . I 4 HOH A 121 318 318 HOH HOH . I 4 HOH A 122 319 319 HOH HOH . I 4 HOH A 123 320 320 HOH HOH . I 4 HOH A 124 321 321 HOH HOH . I 4 HOH A 125 322 322 HOH HOH . I 4 HOH A 126 323 323 HOH HOH . I 4 HOH A 127 324 324 HOH HOH . I 4 HOH A 128 325 325 HOH HOH . I 4 HOH A 129 326 326 HOH HOH . I 4 HOH A 130 327 327 HOH HOH . I 4 HOH A 131 328 328 HOH HOH . I 4 HOH A 132 329 329 HOH HOH . I 4 HOH A 133 330 330 HOH HOH . I 4 HOH A 134 331 331 HOH HOH . I 4 HOH A 135 332 332 HOH HOH . I 4 HOH A 136 333 333 HOH HOH . I 4 HOH A 137 334 334 HOH HOH . I 4 HOH A 138 335 335 HOH HOH . I 4 HOH A 139 336 336 HOH HOH . I 4 HOH A 140 337 337 HOH HOH . I 4 HOH A 141 338 338 HOH HOH . I 4 HOH A 142 339 339 HOH HOH . I 4 HOH A 143 340 340 HOH HOH . I 4 HOH A 144 341 341 HOH HOH . I 4 HOH A 145 342 342 HOH HOH . I 4 HOH A 146 343 343 HOH HOH . I 4 HOH A 147 344 344 HOH HOH . I 4 HOH A 148 345 345 HOH HOH . I 4 HOH A 149 346 346 HOH HOH . I 4 HOH A 150 347 347 HOH HOH . I 4 HOH A 151 348 348 HOH HOH . I 4 HOH A 152 349 349 HOH HOH . I 4 HOH A 153 350 350 HOH HOH . I 4 HOH A 154 351 351 HOH HOH . I 4 HOH A 155 352 352 HOH HOH . I 4 HOH A 156 353 353 HOH HOH . I 4 HOH A 157 354 354 HOH HOH . I 4 HOH A 158 355 355 HOH HOH . I 4 HOH A 159 356 356 HOH HOH . I 4 HOH A 160 357 357 HOH HOH . I 4 HOH A 161 358 358 HOH HOH . I 4 HOH A 162 359 359 HOH HOH . I 4 HOH A 163 360 360 HOH HOH . I 4 HOH A 164 361 361 HOH HOH . I 4 HOH A 165 362 362 HOH HOH . I 4 HOH A 166 363 363 HOH HOH . I 4 HOH A 167 364 364 HOH HOH . I 4 HOH A 168 365 365 HOH HOH . I 4 HOH A 169 366 366 HOH HOH . I 4 HOH A 170 367 367 HOH HOH . I 4 HOH A 171 368 368 HOH HOH . I 4 HOH A 172 369 369 HOH HOH . I 4 HOH A 173 370 370 HOH HOH . I 4 HOH A 174 371 371 HOH HOH . I 4 HOH A 175 372 372 HOH HOH . I 4 HOH A 176 373 373 HOH HOH . I 4 HOH A 177 374 374 HOH HOH . I 4 HOH A 178 375 375 HOH HOH . I 4 HOH A 179 376 376 HOH HOH . I 4 HOH A 180 377 377 HOH HOH . I 4 HOH A 181 378 378 HOH HOH . I 4 HOH A 182 379 379 HOH HOH . I 4 HOH A 183 380 380 HOH HOH . I 4 HOH A 184 381 381 HOH HOH . I 4 HOH A 185 382 382 HOH HOH . I 4 HOH A 186 383 383 HOH HOH . I 4 HOH A 187 384 384 HOH HOH . I 4 HOH A 188 385 385 HOH HOH . I 4 HOH A 189 386 386 HOH HOH . I 4 HOH A 190 387 387 HOH HOH . I 4 HOH A 191 388 388 HOH HOH . I 4 HOH A 192 389 389 HOH HOH . I 4 HOH A 193 390 390 HOH HOH . I 4 HOH A 194 391 391 HOH HOH . I 4 HOH A 195 392 392 HOH HOH . I 4 HOH A 196 393 393 HOH HOH . I 4 HOH A 197 394 394 HOH HOH . I 4 HOH A 198 395 395 HOH HOH . I 4 HOH A 199 396 396 HOH HOH . I 4 HOH A 200 397 397 HOH HOH . I 4 HOH A 201 398 398 HOH HOH . I 4 HOH A 202 399 399 HOH HOH . I 4 HOH A 203 400 400 HOH HOH . I 4 HOH A 204 401 401 HOH HOH . I 4 HOH A 205 402 402 HOH HOH . I 4 HOH A 206 403 403 HOH HOH . I 4 HOH A 207 404 404 HOH HOH . I 4 HOH A 208 405 405 HOH HOH . I 4 HOH A 209 406 406 HOH HOH . I 4 HOH A 210 407 407 HOH HOH . I 4 HOH A 211 408 408 HOH HOH . I 4 HOH A 212 409 409 HOH HOH . I 4 HOH A 213 410 410 HOH HOH . I 4 HOH A 214 411 411 HOH HOH . I 4 HOH A 215 412 412 HOH HOH . I 4 HOH A 216 413 413 HOH HOH . I 4 HOH A 217 414 414 HOH HOH . I 4 HOH A 218 415 415 HOH HOH . I 4 HOH A 219 416 416 HOH HOH . I 4 HOH A 220 417 417 HOH HOH . I 4 HOH A 221 418 418 HOH HOH . I 4 HOH A 222 419 419 HOH HOH . I 4 HOH A 223 420 420 HOH HOH . I 4 HOH A 224 421 421 HOH HOH . I 4 HOH A 225 422 422 HOH HOH . I 4 HOH A 226 423 423 HOH HOH . I 4 HOH A 227 424 424 HOH HOH . I 4 HOH A 228 425 425 HOH HOH . I 4 HOH A 229 426 426 HOH HOH . I 4 HOH A 230 427 427 HOH HOH . I 4 HOH A 231 428 428 HOH HOH . I 4 HOH A 232 429 429 HOH HOH . I 4 HOH A 233 430 430 HOH HOH . I 4 HOH A 234 431 431 HOH HOH . I 4 HOH A 235 432 432 HOH HOH . I 4 HOH A 236 433 433 HOH HOH . I 4 HOH A 237 434 434 HOH HOH . I 4 HOH A 238 435 435 HOH HOH . I 4 HOH A 239 436 436 HOH HOH . I 4 HOH A 240 437 437 HOH HOH . I 4 HOH A 241 438 438 HOH HOH . I 4 HOH A 242 439 439 HOH HOH . I 4 HOH A 243 440 440 HOH HOH . I 4 HOH A 244 441 441 HOH HOH . I 4 HOH A 245 442 442 HOH HOH . I 4 HOH A 246 443 443 HOH HOH . I 4 HOH A 247 444 444 HOH HOH . I 4 HOH A 248 445 445 HOH HOH . I 4 HOH A 249 446 446 HOH HOH . I 4 HOH A 250 447 447 HOH HOH . I 4 HOH A 251 448 448 HOH HOH . I 4 HOH A 252 449 449 HOH HOH . I 4 HOH A 253 450 450 HOH HOH . I 4 HOH A 254 451 451 HOH HOH . I 4 HOH A 255 452 452 HOH HOH . I 4 HOH A 256 453 453 HOH HOH . I 4 HOH A 257 454 454 HOH HOH . I 4 HOH A 258 455 455 HOH HOH . I 4 HOH A 259 456 456 HOH HOH . I 4 HOH A 260 457 457 HOH HOH . I 4 HOH A 261 458 458 HOH HOH . I 4 HOH A 262 459 459 HOH HOH . I 4 HOH A 263 460 460 HOH HOH . I 4 HOH A 264 461 461 HOH HOH . I 4 HOH A 265 462 462 HOH HOH . I 4 HOH A 266 463 463 HOH HOH . I 4 HOH A 267 464 464 HOH HOH . I 4 HOH A 268 465 465 HOH HOH . I 4 HOH A 269 466 466 HOH HOH . I 4 HOH A 270 467 467 HOH HOH . I 4 HOH A 271 468 468 HOH HOH . I 4 HOH A 272 469 469 HOH HOH . I 4 HOH A 273 470 470 HOH HOH . I 4 HOH A 274 471 471 HOH HOH . I 4 HOH A 275 472 472 HOH HOH . I 4 HOH A 276 473 473 HOH HOH . I 4 HOH A 277 474 474 HOH HOH . I 4 HOH A 278 475 475 HOH HOH . I 4 HOH A 279 476 476 HOH HOH . I 4 HOH A 280 477 477 HOH HOH . I 4 HOH A 281 478 478 HOH HOH . I 4 HOH A 282 479 479 HOH HOH . I 4 HOH A 283 480 480 HOH HOH . I 4 HOH A 284 481 481 HOH HOH . I 4 HOH A 285 482 482 HOH HOH . I 4 HOH A 286 483 483 HOH HOH . I 4 HOH A 287 484 484 HOH HOH . I 4 HOH A 288 485 485 HOH HOH . I 4 HOH A 289 486 486 HOH HOH . I 4 HOH A 290 487 487 HOH HOH . I 4 HOH A 291 488 488 HOH HOH . I 4 HOH A 292 489 489 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -2.317 _atom_site.Cartn_y 29.333 _atom_site.Cartn_z -26.832 _atom_site.occupancy 0.58 _atom_site.B_iso_or_equiv 17.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 193 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #