data_2DFJ
#
_model_server_result.job_id            cI4c3ROsUTEc-rAn4gZcfg 
_model_server_result.datetime_utc      '2024-10-28 14:23:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2dfj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    2DFJ 
#
_exptl.entry_id    2DFJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          129.14 
_cell.angle_gamma         90 
_cell.entry_id            2DFJ 
_cell.length_a            167.498 
_cell.length_b            54.965 
_cell.length_c            119.203 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2DFJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 8 A ASP 8 1_555 D MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc2 A NE2 HIS 10 A HIS 10 1_555 D MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc3 A OD2 ASP 37 A ASP 37 1_555 C MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc4 A OD2 ASP 37 A ASP 37 1_555 D MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc5 A OD1 ASN 65 A ASN 65 1_555 C MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc6 A NE2 HIS 120 A HIS 120 1_555 C MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc7 A ND1 HIS 227 A HIS 227 1_555 C MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc8 C MN MN . A MN 1001 1_555 G O HOH . A HOH 1021 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc9 C MN MN . A MN 1001 1_555 G O HOH . A HOH 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc10 D MN MN . A MN 1002 1_555 G O HOH . A HOH 1022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc11 D MN MN . A MN 1002 1_555 G O HOH . A HOH 1023 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc12 D MN MN . A MN 1002 1_555 G O HOH . A HOH 1029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? 
metalc ? metalc13 B OD2 ASP 8 B ASP 8 1_555 F MN MN . B MN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? 
metalc ? metalc14 B NE2 HIS 10 B HIS 10 1_555 F MN MN . B MN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc15 B OD2 ASP 37 B ASP 37 1_555 E MN MN . B MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc16 B OD2 ASP 37 B ASP 37 1_555 F MN MN . B MN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc17 B OD1 ASN 65 B ASN 65 1_555 E MN MN . B MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc18 B NE2 HIS 120 B HIS 120 1_555 E MN MN . B MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? 
metalc ? metalc19 B ND1 HIS 227 B HIS 227 1_555 E MN MN . B MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc20 E MN MN . B MN 2001 1_555 H O HOH . B HOH 2023 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? 
metalc ? metalc21 E MN MN . B MN 2001 1_555 H O HOH . B HOH 2025 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc22 F MN MN . B MN 2002 1_555 H O HOH . B HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc23 F MN MN . B MN 2002 1_555 H O HOH . B HOH 2017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc24 F MN MN . B MN 2002 1_555 H O HOH . B HOH 2025 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2DFJ 
_atom_sites.fract_transf_matrix[1][1]    0.00597 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004859 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018193 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010816 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 1001 1001 MN MN . 
D 2 MN A 1 1002 1002 MN MN . 
E 2 MN B 1 2001 1001 MN MN . 
F 2 MN B 1 2002 1002 MN MN . 
G 3 HOH A 1 1003 5 HOH HOH . 
G 3 HOH A 2 1004 6 HOH HOH . 
G 3 HOH A 3 1005 7 HOH HOH . 
G 3 HOH A 4 1006 12 HOH HOH . 
G 3 HOH A 5 1007 13 HOH HOH . 
G 3 HOH A 6 1008 15 HOH HOH . 
G 3 HOH A 7 1009 17 HOH HOH . 
G 3 HOH A 8 1010 18 HOH HOH . 
G 3 HOH A 9 1011 19 HOH HOH . 
G 3 HOH A 10 1012 23 HOH HOH . 
G 3 HOH A 11 1013 24 HOH HOH . 
G 3 HOH A 12 1014 28 HOH HOH . 
G 3 HOH A 13 1015 30 HOH HOH . 
G 3 HOH A 14 1016 32 HOH HOH . 
G 3 HOH A 15 1017 35 HOH HOH . 
G 3 HOH A 16 1018 37 HOH HOH . 
G 3 HOH A 17 1019 39 HOH HOH . 
G 3 HOH A 18 1020 42 HOH HOH . 
G 3 HOH A 19 1021 43 HOH HOH . 
G 3 HOH A 20 1022 44 HOH HOH . 
G 3 HOH A 21 1023 45 HOH HOH . 
G 3 HOH A 22 1024 46 HOH HOH . 
G 3 HOH A 23 1025 47 HOH HOH . 
G 3 HOH A 24 1026 48 HOH HOH . 
G 3 HOH A 25 1027 49 HOH HOH . 
G 3 HOH A 26 1028 52 HOH HOH . 
G 3 HOH A 27 1029 53 HOH HOH . 
G 3 HOH A 28 1030 54 HOH HOH . 
G 3 HOH A 29 1031 55 HOH HOH . 
G 3 HOH A 30 1032 58 HOH HOH . 
G 3 HOH A 31 1033 59 HOH HOH . 
G 3 HOH A 32 1034 62 HOH HOH . 
G 3 HOH A 33 1035 67 HOH HOH . 
G 3 HOH A 34 1036 68 HOH HOH . 
G 3 HOH A 35 1037 69 HOH HOH . 
G 3 HOH A 36 1038 70 HOH HOH . 
G 3 HOH A 37 1039 71 HOH HOH . 
G 3 HOH A 38 1040 72 HOH HOH . 
G 3 HOH A 39 1041 74 HOH HOH . 
G 3 HOH A 40 1042 75 HOH HOH . 
G 3 HOH A 41 1043 77 HOH HOH . 
G 3 HOH A 42 1044 78 HOH HOH . 
G 3 HOH A 43 1045 79 HOH HOH . 
G 3 HOH A 44 1046 80 HOH HOH . 
G 3 HOH A 45 1047 85 HOH HOH . 
G 3 HOH A 46 1048 86 HOH HOH . 
G 3 HOH A 47 1049 87 HOH HOH . 
G 3 HOH A 48 1050 90 HOH HOH . 
G 3 HOH A 49 1051 94 HOH HOH . 
G 3 HOH A 50 1052 96 HOH HOH . 
G 3 HOH A 51 1053 97 HOH HOH . 
G 3 HOH A 52 1054 100 HOH HOH . 
G 3 HOH A 53 1055 102 HOH HOH . 
G 3 HOH A 54 1056 107 HOH HOH . 
G 3 HOH A 55 1057 109 HOH HOH . 
G 3 HOH A 56 1058 111 HOH HOH . 
G 3 HOH A 57 1059 115 HOH HOH . 
G 3 HOH A 58 1060 116 HOH HOH . 
G 3 HOH A 59 1061 117 HOH HOH . 
G 3 HOH A 60 1062 118 HOH HOH . 
G 3 HOH A 61 1063 120 HOH HOH . 
G 3 HOH A 62 1064 121 HOH HOH . 
G 3 HOH A 63 1065 122 HOH HOH . 
G 3 HOH A 64 1066 124 HOH HOH . 
G 3 HOH A 65 1067 127 HOH HOH . 
G 3 HOH A 66 1068 135 HOH HOH . 
G 3 HOH A 67 1069 136 HOH HOH . 
G 3 HOH A 68 1070 139 HOH HOH . 
G 3 HOH A 69 1071 143 HOH HOH . 
G 3 HOH A 70 1072 144 HOH HOH . 
G 3 HOH A 71 1073 146 HOH HOH . 
G 3 HOH A 72 1074 147 HOH HOH . 
G 3 HOH A 73 1075 154 HOH HOH . 
G 3 HOH A 74 1076 158 HOH HOH . 
G 3 HOH A 75 1077 161 HOH HOH . 
H 3 HOH B 1 2003 1 HOH HOH . 
H 3 HOH B 2 2004 2 HOH HOH . 
H 3 HOH B 3 2005 3 HOH HOH . 
H 3 HOH B 4 2006 4 HOH HOH . 
H 3 HOH B 5 2007 8 HOH HOH . 
H 3 HOH B 6 2008 9 HOH HOH . 
H 3 HOH B 7 2009 10 HOH HOH . 
H 3 HOH B 8 2010 11 HOH HOH . 
H 3 HOH B 9 2011 14 HOH HOH . 
H 3 HOH B 10 2012 16 HOH HOH . 
H 3 HOH B 11 2013 20 HOH HOH . 
H 3 HOH B 12 2014 21 HOH HOH . 
H 3 HOH B 13 2015 22 HOH HOH . 
H 3 HOH B 14 2016 25 HOH HOH . 
H 3 HOH B 15 2017 26 HOH HOH . 
H 3 HOH B 16 2018 27 HOH HOH . 
H 3 HOH B 17 2019 29 HOH HOH . 
H 3 HOH B 18 2020 31 HOH HOH . 
H 3 HOH B 19 2021 33 HOH HOH . 
H 3 HOH B 20 2022 34 HOH HOH . 
H 3 HOH B 21 2023 36 HOH HOH . 
H 3 HOH B 22 2024 38 HOH HOH . 
H 3 HOH B 23 2025 40 HOH HOH . 
H 3 HOH B 24 2026 41 HOH HOH . 
H 3 HOH B 25 2027 50 HOH HOH . 
H 3 HOH B 26 2028 51 HOH HOH . 
H 3 HOH B 27 2029 56 HOH HOH . 
H 3 HOH B 28 2030 57 HOH HOH . 
H 3 HOH B 29 2031 60 HOH HOH . 
H 3 HOH B 30 2032 61 HOH HOH . 
H 3 HOH B 31 2033 63 HOH HOH . 
H 3 HOH B 32 2034 64 HOH HOH . 
H 3 HOH B 33 2035 65 HOH HOH . 
H 3 HOH B 34 2036 66 HOH HOH . 
H 3 HOH B 35 2037 73 HOH HOH . 
H 3 HOH B 36 2038 76 HOH HOH . 
H 3 HOH B 37 2039 81 HOH HOH . 
H 3 HOH B 38 2040 82 HOH HOH . 
H 3 HOH B 39 2041 83 HOH HOH . 
H 3 HOH B 40 2042 84 HOH HOH . 
H 3 HOH B 41 2043 88 HOH HOH . 
H 3 HOH B 42 2044 89 HOH HOH . 
H 3 HOH B 43 2045 91 HOH HOH . 
H 3 HOH B 44 2046 92 HOH HOH . 
H 3 HOH B 45 2047 93 HOH HOH . 
H 3 HOH B 46 2048 95 HOH HOH . 
H 3 HOH B 47 2049 98 HOH HOH . 
H 3 HOH B 48 2050 99 HOH HOH . 
H 3 HOH B 49 2051 101 HOH HOH . 
H 3 HOH B 50 2052 103 HOH HOH . 
H 3 HOH B 51 2053 104 HOH HOH . 
H 3 HOH B 52 2054 105 HOH HOH . 
H 3 HOH B 53 2055 106 HOH HOH . 
H 3 HOH B 54 2056 108 HOH HOH . 
H 3 HOH B 55 2057 110 HOH HOH . 
H 3 HOH B 56 2058 112 HOH HOH . 
H 3 HOH B 57 2059 113 HOH HOH . 
H 3 HOH B 58 2060 114 HOH HOH . 
H 3 HOH B 59 2061 119 HOH HOH . 
H 3 HOH B 60 2062 123 HOH HOH . 
H 3 HOH B 61 2063 125 HOH HOH . 
H 3 HOH B 62 2064 126 HOH HOH . 
H 3 HOH B 63 2065 128 HOH HOH . 
H 3 HOH B 64 2066 129 HOH HOH . 
H 3 HOH B 65 2067 130 HOH HOH . 
H 3 HOH B 66 2068 131 HOH HOH . 
H 3 HOH B 67 2069 132 HOH HOH . 
H 3 HOH B 68 2070 133 HOH HOH . 
H 3 HOH B 69 2071 134 HOH HOH . 
H 3 HOH B 70 2072 137 HOH HOH . 
H 3 HOH B 71 2073 138 HOH HOH . 
H 3 HOH B 72 2074 140 HOH HOH . 
H 3 HOH B 73 2075 141 HOH HOH . 
H 3 HOH B 74 2076 142 HOH HOH . 
H 3 HOH B 75 2077 145 HOH HOH . 
H 3 HOH B 76 2078 148 HOH HOH . 
H 3 HOH B 77 2079 149 HOH HOH . 
H 3 HOH B 78 2080 150 HOH HOH . 
H 3 HOH B 79 2081 151 HOH HOH . 
H 3 HOH B 80 2082 152 HOH HOH . 
H 3 HOH B 81 2083 153 HOH HOH . 
H 3 HOH B 82 2084 155 HOH HOH . 
H 3 HOH B 83 2085 156 HOH HOH . 
H 3 HOH B 84 2086 157 HOH HOH . 
H 3 HOH B 85 2087 159 HOH HOH . 
H 3 HOH B 86 2088 160 HOH HOH . 
H 3 HOH B 87 2089 162 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               67.669 
_atom_site.Cartn_y               39.38 
_atom_site.Cartn_z               51.096 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        64.64 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           1 
#