data_2DG9 # _model_server_result.job_id lnpN7v2U0mM8pmPiYqfjww _model_server_result.datetime_utc '2024-12-15 16:42:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dg9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 2DG9 # _exptl.entry_id 2DG9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DG9 _cell.length_a 44.119 _cell.length_b 49.359 _cell.length_c 51.605 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DG9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2DG9 _atom_sites.fract_transf_matrix[1][1] 0.022666 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019378 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RAP A 1 501 1 RAP RAP . C 3 GOL A 1 1001 1 GOL GOL . D 4 HOH A 1 1002 1 HOH HOH . D 4 HOH A 2 1003 2 HOH HOH . D 4 HOH A 3 1004 3 HOH HOH . D 4 HOH A 4 1005 4 HOH HOH . D 4 HOH A 5 1006 5 HOH HOH . D 4 HOH A 6 1007 6 HOH HOH . D 4 HOH A 7 1008 7 HOH HOH . D 4 HOH A 8 1009 8 HOH HOH . D 4 HOH A 9 1010 9 HOH HOH . D 4 HOH A 10 1011 10 HOH HOH . D 4 HOH A 11 1012 11 HOH HOH . D 4 HOH A 12 1013 12 HOH HOH . D 4 HOH A 13 1014 13 HOH HOH . D 4 HOH A 14 1015 14 HOH HOH . D 4 HOH A 15 1016 15 HOH HOH . D 4 HOH A 16 1017 16 HOH HOH . D 4 HOH A 17 1018 17 HOH HOH . D 4 HOH A 18 1019 18 HOH HOH . D 4 HOH A 19 1020 19 HOH HOH . D 4 HOH A 20 1021 20 HOH HOH . D 4 HOH A 21 1022 21 HOH HOH . D 4 HOH A 22 1023 22 HOH HOH . D 4 HOH A 23 1024 23 HOH HOH . D 4 HOH A 24 1025 24 HOH HOH . D 4 HOH A 25 1026 25 HOH HOH . D 4 HOH A 26 1027 26 HOH HOH . D 4 HOH A 27 1028 27 HOH HOH . D 4 HOH A 28 1029 28 HOH HOH . D 4 HOH A 29 1030 29 HOH HOH . D 4 HOH A 30 1031 30 HOH HOH . D 4 HOH A 31 1032 31 HOH HOH . D 4 HOH A 32 1033 32 HOH HOH . D 4 HOH A 33 1034 33 HOH HOH . D 4 HOH A 34 1035 34 HOH HOH . D 4 HOH A 35 1036 35 HOH HOH . D 4 HOH A 36 1037 36 HOH HOH . D 4 HOH A 37 1038 37 HOH HOH . D 4 HOH A 38 1039 38 HOH HOH . D 4 HOH A 39 1040 39 HOH HOH . D 4 HOH A 40 1041 40 HOH HOH . D 4 HOH A 41 1042 41 HOH HOH . D 4 HOH A 42 1043 42 HOH HOH . D 4 HOH A 43 1044 43 HOH HOH . D 4 HOH A 44 1045 45 HOH HOH . D 4 HOH A 45 1046 46 HOH HOH . D 4 HOH A 46 1047 47 HOH HOH . D 4 HOH A 47 1048 48 HOH HOH . D 4 HOH A 48 1049 49 HOH HOH . D 4 HOH A 49 1050 50 HOH HOH . D 4 HOH A 50 1051 51 HOH HOH . D 4 HOH A 51 1052 52 HOH HOH . D 4 HOH A 52 1053 53 HOH HOH . D 4 HOH A 53 1054 54 HOH HOH . D 4 HOH A 54 1055 55 HOH HOH . D 4 HOH A 55 1056 56 HOH HOH . D 4 HOH A 56 1057 57 HOH HOH . D 4 HOH A 57 1058 58 HOH HOH . D 4 HOH A 58 1059 59 HOH HOH . D 4 HOH A 59 1060 60 HOH HOH . D 4 HOH A 60 1061 61 HOH HOH . D 4 HOH A 61 1062 62 HOH HOH . D 4 HOH A 62 1063 63 HOH HOH . D 4 HOH A 63 1064 64 HOH HOH . D 4 HOH A 64 1065 65 HOH HOH . D 4 HOH A 65 1066 66 HOH HOH . D 4 HOH A 66 1067 67 HOH HOH . D 4 HOH A 67 1068 68 HOH HOH . D 4 HOH A 68 1069 69 HOH HOH . D 4 HOH A 69 1070 70 HOH HOH . D 4 HOH A 70 1071 71 HOH HOH . D 4 HOH A 71 1072 72 HOH HOH . D 4 HOH A 72 1073 74 HOH HOH . D 4 HOH A 73 1074 75 HOH HOH . D 4 HOH A 74 1075 76 HOH HOH . D 4 HOH A 75 1076 77 HOH HOH . D 4 HOH A 76 1077 78 HOH HOH . D 4 HOH A 77 1078 79 HOH HOH . D 4 HOH A 78 1079 80 HOH HOH . D 4 HOH A 79 1080 81 HOH HOH . D 4 HOH A 80 1081 82 HOH HOH . D 4 HOH A 81 1082 83 HOH HOH . D 4 HOH A 82 1083 84 HOH HOH . D 4 HOH A 83 1084 85 HOH HOH . D 4 HOH A 84 1085 86 HOH HOH . D 4 HOH A 85 1086 87 HOH HOH . D 4 HOH A 86 1087 88 HOH HOH . D 4 HOH A 87 1088 89 HOH HOH . D 4 HOH A 88 1089 90 HOH HOH . D 4 HOH A 89 1090 91 HOH HOH . D 4 HOH A 90 1091 92 HOH HOH . D 4 HOH A 91 1092 93 HOH HOH . D 4 HOH A 92 1093 94 HOH HOH . D 4 HOH A 93 1094 95 HOH HOH . D 4 HOH A 94 1095 96 HOH HOH . D 4 HOH A 95 1096 97 HOH HOH . D 4 HOH A 96 1097 98 HOH HOH . D 4 HOH A 97 1098 99 HOH HOH . D 4 HOH A 98 1099 100 HOH HOH . D 4 HOH A 99 1100 101 HOH HOH . D 4 HOH A 100 1101 102 HOH HOH . D 4 HOH A 101 1102 103 HOH HOH . D 4 HOH A 102 1103 104 HOH HOH . D 4 HOH A 103 1104 105 HOH HOH . D 4 HOH A 104 1105 106 HOH HOH . D 4 HOH A 105 1106 107 HOH HOH . D 4 HOH A 106 1107 108 HOH HOH . D 4 HOH A 107 1108 109 HOH HOH . D 4 HOH A 108 1109 110 HOH HOH . D 4 HOH A 109 1110 111 HOH HOH . D 4 HOH A 110 1111 112 HOH HOH . D 4 HOH A 111 1112 113 HOH HOH . D 4 HOH A 112 1113 114 HOH HOH . D 4 HOH A 113 1114 115 HOH HOH . D 4 HOH A 114 1115 116 HOH HOH . D 4 HOH A 115 1116 117 HOH HOH . D 4 HOH A 116 1117 118 HOH HOH . D 4 HOH A 117 1118 119 HOH HOH . D 4 HOH A 118 1119 120 HOH HOH . D 4 HOH A 119 1120 122 HOH HOH . D 4 HOH A 120 1121 123 HOH HOH . D 4 HOH A 121 1122 125 HOH HOH . D 4 HOH A 122 1123 126 HOH HOH . D 4 HOH A 123 1124 127 HOH HOH . D 4 HOH A 124 1125 128 HOH HOH . D 4 HOH A 125 1126 129 HOH HOH . D 4 HOH A 126 1127 130 HOH HOH . D 4 HOH A 127 1128 132 HOH HOH . D 4 HOH A 128 1129 133 HOH HOH . D 4 HOH A 129 1130 134 HOH HOH . D 4 HOH A 130 1131 135 HOH HOH . D 4 HOH A 131 1132 136 HOH HOH . D 4 HOH A 132 1133 137 HOH HOH . D 4 HOH A 133 1134 138 HOH HOH . D 4 HOH A 134 1135 140 HOH HOH . D 4 HOH A 135 1136 141 HOH HOH . D 4 HOH A 136 1137 142 HOH HOH . D 4 HOH A 137 1138 143 HOH HOH . D 4 HOH A 138 1139 144 HOH HOH . D 4 HOH A 139 1140 145 HOH HOH . D 4 HOH A 140 1141 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 20.438 10.209 12.541 1 38.23 ? C1 GOL 1001 A 1 HETATM 2 O O1 GOL . . . C 3 21.685 9.772 13.038 1 38.52 ? O1 GOL 1001 A 1 HETATM 3 C C2 GOL . . . C 3 19.321 9.547 13.34 1 37.84 ? C2 GOL 1001 A 1 HETATM 4 O O2 GOL . . . C 3 19.217 8.184 12.993 1 37.73 ? O2 GOL 1001 A 1 HETATM 5 C C3 GOL . . . C 3 17.993 10.234 13.068 1 37.7 ? C3 GOL 1001 A 1 HETATM 6 O O3 GOL . . . C 3 17.078 9.862 14.074 1 37.22 ? O3 GOL 1001 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #