data_2DGL # _model_server_result.job_id BQiionDl4-vJAdoHewd5kg _model_server_result.datetime_utc '2024-11-23 12:28:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dgl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":469}' # _entry.id 2DGL # _exptl.entry_id 2DGL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 79.904 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BROMIDE ION' _entity.pdbx_number_of_molecules 24 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2DGL _cell.length_a 297.051 _cell.length_b 297.051 _cell.length_c 233.731 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DGL _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 EA N N ? 2 FA N N ? 2 GA N N ? 2 HA N N ? 2 KA N N ? 2 LA N N ? 2 MA N N ? 2 NA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 276 A LYS 276 1_555 K C4A PLP . A PLP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 B NZ LYS 276 B LYS 276 1_555 R C4A PLP . B PLP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 C NZ LYS 276 C LYS 276 1_555 X C4A PLP . C PLP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 D NZ LYS 276 D LYS 276 1_555 DA C4A PLP . D PLP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale5 E NZ LYS 276 E LYS 276 1_555 IA C4A PLP . E PLP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale6 F NZ LYS 276 F LYS 276 1_555 OA C4A PLP . F PLP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'Br -1' _chem_comp.formula_weight 79.904 _chem_comp.id BR _chem_comp.mon_nstd_flag . _chem_comp.name 'BROMIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2DGL _atom_sites.fract_transf_matrix[1][1] 0.003366 _atom_sites.fract_transf_matrix[1][2] 0.001944 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 BR A 1 467 301 BR BR . H 2 BR A 1 468 303 BR BR . I 2 BR A 1 469 317 BR BR . J 2 BR A 1 470 319 BR BR . K 3 PLP A 1 500 500 PLP PLP . L 4 ACY A 1 568 518 ACY ACY . M 2 BR B 1 467 304 BR BR . N 2 BR B 1 468 306 BR BR . O 2 BR B 1 469 307 BR BR . P 2 BR B 1 470 308 BR BR . Q 2 BR B 1 471 320 BR BR . R 3 PLP B 1 500 500 PLP PLP . S 4 ACY B 1 558 518 ACY ACY . T 2 BR C 1 467 305 BR BR . U 2 BR C 1 468 309 BR BR . V 2 BR C 1 469 314 BR BR . W 2 BR C 1 470 321 BR BR . X 3 PLP C 1 501 501 PLP PLP . Y 4 ACY C 1 538 518 ACY ACY . Z 4 ACY C 1 548 518 ACY ACY . AA 2 BR D 1 467 310 BR BR . BA 2 BR D 1 468 312 BR BR . CA 2 BR D 1 469 322 BR BR . DA 3 PLP D 1 501 501 PLP PLP . EA 2 BR E 1 467 311 BR BR . FA 2 BR E 1 468 313 BR BR . GA 2 BR E 1 469 315 BR BR . HA 2 BR E 1 470 323 BR BR . IA 3 PLP E 1 502 502 PLP PLP . JA 4 ACY E 1 518 518 ACY ACY . KA 2 BR F 1 467 302 BR BR . LA 2 BR F 1 468 316 BR BR . MA 2 BR F 1 469 318 BR BR . NA 2 BR F 1 470 324 BR BR . OA 3 PLP F 1 502 502 PLP PLP . PA 4 ACY F 1 528 518 ACY ACY . QA 5 HOH A 1 569 1 HOH HOH . QA 5 HOH A 2 570 4 HOH HOH . QA 5 HOH A 3 571 5 HOH HOH . QA 5 HOH A 4 572 6 HOH HOH . QA 5 HOH A 5 573 8 HOH HOH . QA 5 HOH A 6 574 9 HOH HOH . QA 5 HOH A 7 575 10 HOH HOH . QA 5 HOH A 8 576 11 HOH HOH . QA 5 HOH A 9 577 12 HOH HOH . QA 5 HOH A 10 578 13 HOH HOH . QA 5 HOH A 11 579 14 HOH HOH . QA 5 HOH A 12 580 15 HOH HOH . QA 5 HOH A 13 581 16 HOH HOH . QA 5 HOH A 14 582 19 HOH HOH . QA 5 HOH A 15 583 27 HOH HOH . QA 5 HOH A 16 584 28 HOH HOH . QA 5 HOH A 17 585 91 HOH HOH . QA 5 HOH A 18 586 107 HOH HOH . QA 5 HOH A 19 587 110 HOH HOH . QA 5 HOH A 20 588 115 HOH HOH . QA 5 HOH A 21 589 117 HOH HOH . QA 5 HOH A 22 590 120 HOH HOH . QA 5 HOH A 23 591 126 HOH HOH . RA 5 HOH B 1 559 2 HOH HOH . RA 5 HOH B 2 560 7 HOH HOH . RA 5 HOH B 3 561 17 HOH HOH . RA 5 HOH B 4 562 18 HOH HOH . RA 5 HOH B 5 563 20 HOH HOH . RA 5 HOH B 6 564 21 HOH HOH . RA 5 HOH B 7 565 23 HOH HOH . RA 5 HOH B 8 566 24 HOH HOH . RA 5 HOH B 9 567 25 HOH HOH . RA 5 HOH B 10 568 26 HOH HOH . RA 5 HOH B 11 569 29 HOH HOH . RA 5 HOH B 12 570 30 HOH HOH . RA 5 HOH B 13 571 31 HOH HOH . RA 5 HOH B 14 572 32 HOH HOH . RA 5 HOH B 15 573 33 HOH HOH . RA 5 HOH B 16 574 34 HOH HOH . RA 5 HOH B 17 575 35 HOH HOH . RA 5 HOH B 18 576 36 HOH HOH . RA 5 HOH B 19 577 37 HOH HOH . RA 5 HOH B 20 578 38 HOH HOH . RA 5 HOH B 21 579 39 HOH HOH . RA 5 HOH B 22 580 40 HOH HOH . RA 5 HOH B 23 581 82 HOH HOH . RA 5 HOH B 24 582 85 HOH HOH . RA 5 HOH B 25 583 92 HOH HOH . RA 5 HOH B 26 584 93 HOH HOH . RA 5 HOH B 27 585 94 HOH HOH . RA 5 HOH B 28 586 95 HOH HOH . RA 5 HOH B 29 587 116 HOH HOH . RA 5 HOH B 30 588 119 HOH HOH . RA 5 HOH B 31 589 121 HOH HOH . RA 5 HOH B 32 590 123 HOH HOH . RA 5 HOH B 33 591 130 HOH HOH . SA 5 HOH C 1 549 22 HOH HOH . SA 5 HOH C 2 550 41 HOH HOH . SA 5 HOH C 3 551 43 HOH HOH . SA 5 HOH C 4 552 44 HOH HOH . SA 5 HOH C 5 553 45 HOH HOH . SA 5 HOH C 6 554 46 HOH HOH . SA 5 HOH C 7 555 47 HOH HOH . SA 5 HOH C 8 556 48 HOH HOH . SA 5 HOH C 9 557 99 HOH HOH . SA 5 HOH C 10 558 101 HOH HOH . SA 5 HOH C 11 559 102 HOH HOH . SA 5 HOH C 12 560 103 HOH HOH . SA 5 HOH C 13 561 111 HOH HOH . SA 5 HOH C 14 562 118 HOH HOH . TA 5 HOH D 1 502 49 HOH HOH . TA 5 HOH D 2 503 50 HOH HOH . TA 5 HOH D 3 504 51 HOH HOH . TA 5 HOH D 4 505 52 HOH HOH . TA 5 HOH D 5 506 53 HOH HOH . TA 5 HOH D 6 507 54 HOH HOH . TA 5 HOH D 7 508 84 HOH HOH . TA 5 HOH D 8 509 105 HOH HOH . TA 5 HOH D 9 510 109 HOH HOH . TA 5 HOH D 10 511 125 HOH HOH . TA 5 HOH D 11 512 129 HOH HOH . TA 5 HOH D 12 513 131 HOH HOH . TA 5 HOH D 13 514 132 HOH HOH . UA 5 HOH E 1 519 42 HOH HOH . UA 5 HOH E 2 520 55 HOH HOH . UA 5 HOH E 3 521 58 HOH HOH . UA 5 HOH E 4 522 59 HOH HOH . UA 5 HOH E 5 523 60 HOH HOH . UA 5 HOH E 6 524 61 HOH HOH . UA 5 HOH E 7 525 62 HOH HOH . UA 5 HOH E 8 526 63 HOH HOH . UA 5 HOH E 9 527 64 HOH HOH . UA 5 HOH E 10 528 65 HOH HOH . UA 5 HOH E 11 529 66 HOH HOH . UA 5 HOH E 12 530 68 HOH HOH . UA 5 HOH E 13 531 69 HOH HOH . UA 5 HOH E 14 532 70 HOH HOH . UA 5 HOH E 15 533 76 HOH HOH . UA 5 HOH E 16 534 81 HOH HOH . UA 5 HOH E 17 535 86 HOH HOH . UA 5 HOH E 18 536 89 HOH HOH . UA 5 HOH E 19 537 98 HOH HOH . UA 5 HOH E 20 538 106 HOH HOH . UA 5 HOH E 21 539 108 HOH HOH . UA 5 HOH E 22 540 112 HOH HOH . UA 5 HOH E 23 541 122 HOH HOH . UA 5 HOH E 24 542 128 HOH HOH . UA 5 HOH E 25 543 133 HOH HOH . UA 5 HOH E 26 544 134 HOH HOH . VA 5 HOH F 1 529 3 HOH HOH . VA 5 HOH F 2 530 56 HOH HOH . VA 5 HOH F 3 531 57 HOH HOH . VA 5 HOH F 4 532 67 HOH HOH . VA 5 HOH F 5 533 71 HOH HOH . VA 5 HOH F 6 534 72 HOH HOH . VA 5 HOH F 7 535 73 HOH HOH . VA 5 HOH F 8 536 74 HOH HOH . VA 5 HOH F 9 537 75 HOH HOH . VA 5 HOH F 10 538 77 HOH HOH . VA 5 HOH F 11 539 78 HOH HOH . VA 5 HOH F 12 540 79 HOH HOH . VA 5 HOH F 13 541 80 HOH HOH . VA 5 HOH F 14 542 83 HOH HOH . VA 5 HOH F 15 543 87 HOH HOH . VA 5 HOH F 16 544 88 HOH HOH . VA 5 HOH F 17 545 90 HOH HOH . VA 5 HOH F 18 546 96 HOH HOH . VA 5 HOH F 19 547 97 HOH HOH . VA 5 HOH F 20 548 100 HOH HOH . VA 5 HOH F 21 549 104 HOH HOH . VA 5 HOH F 22 550 113 HOH HOH . VA 5 HOH F 23 551 114 HOH HOH . VA 5 HOH F 24 552 124 HOH HOH . VA 5 HOH F 25 553 127 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol BR _atom_site.label_atom_id BR _atom_site.label_comp_id BR _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 2 _atom_site.Cartn_x -93.682 _atom_site.Cartn_y 88.241 _atom_site.Cartn_z -18.717 _atom_site.occupancy 0.96 _atom_site.B_iso_or_equiv 67.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id BR _atom_site.auth_comp_id BR _atom_site.auth_seq_id 469 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #