data_2DHF # _model_server_result.job_id VKbjs_sYJfgpCoe6b6ahZg _model_server_result.datetime_utc '2024-11-08 14:35:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dhf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":187}' # _entry.id 2DHF # _exptl.entry_id 2DHF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 440.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-DEAZAFOLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 93.9 _cell.angle_beta 91.4 _cell.angle_gamma 111.5 _cell.entry_id 2DHF _cell.length_a 36.1 _cell.length_b 38.5 _cell.length_c 76.8 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C20 H20 N6 O6' _chem_comp.formula_weight 440.409 _chem_comp.id DZF _chem_comp.mon_nstd_flag . _chem_comp.name '5-DEAZAFOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DZF sing 83 n y N1 C8A DZF sing 84 n y N1 HN1 DZF sing 85 n n C2 NA2 DZF sing 86 n n C2 N3 DZF doub 87 n y NA2 HN21 DZF sing 88 n n NA2 HN22 DZF sing 89 n n N3 C4 DZF sing 90 n y C4 O4 DZF doub 91 n n C4 C4A DZF sing 92 n y C4A C5 DZF sing 93 n y C4A C8A DZF doub 94 n y C5 C6 DZF doub 95 n y C5 H5 DZF sing 96 n n C6 C7 DZF sing 97 n y C6 C9 DZF sing 98 n n C7 N8 DZF doub 99 n y C7 H7 DZF sing 100 n n N8 C8A DZF sing 101 n y C9 N10 DZF sing 102 n n C9 H91 DZF sing 103 n n C9 H92 DZF sing 104 n n N10 C14 DZF sing 105 n n N10 HN0 DZF sing 106 n n C11 C12 DZF doub 107 n y C11 C16 DZF sing 108 n y C11 C DZF sing 109 n n C12 C13 DZF sing 110 n y C12 H12 DZF sing 111 n n C13 C14 DZF doub 112 n y C13 H13 DZF sing 113 n n C14 C15 DZF sing 114 n y C15 C16 DZF doub 115 n y C15 H15 DZF sing 116 n n C16 H16 DZF sing 117 n n C O DZF doub 118 n n C N DZF sing 119 n n N CA DZF sing 120 n n N HN DZF sing 121 n n CA CB DZF sing 122 n n CA CT DZF sing 123 n n CA HA DZF sing 124 n n CB CG DZF sing 125 n n CB HB1 DZF sing 126 n n CB HB2 DZF sing 127 n n CG CD DZF sing 128 n n CG HG1 DZF sing 129 n n CG HG2 DZF sing 130 n n CD OE1 DZF doub 131 n n CD OE2 DZF sing 132 n n OE2 HOE2 DZF sing 133 n n CT O1 DZF doub 134 n n CT O2 DZF sing 135 n n O2 HO2 DZF sing 136 n n # _atom_sites.entry_id 2DHF _atom_sites.fract_transf_matrix[1][1] 0.027701 _atom_sites.fract_transf_matrix[1][2] 0.010912 _atom_sites.fract_transf_matrix[1][3] 0.001585 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027917 _atom_sites.fract_transf_matrix[2][3] 0.002318 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01307 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DZF A 1 187 187 DZF DZF . D 2 DZF B 1 187 187 DZF DZF . E 3 HOH A 1 403 403 HOH HOH . E 3 HOH A 2 404 404 HOH HOH . E 3 HOH A 3 406 406 HOH HOH . E 3 HOH A 4 407 407 HOH HOH . E 3 HOH A 5 411 411 HOH HOH . E 3 HOH A 6 412 412 HOH HOH . E 3 HOH A 7 416 416 HOH HOH . E 3 HOH A 8 417 417 HOH HOH . E 3 HOH A 9 419 419 HOH HOH . E 3 HOH A 10 420 420 HOH HOH . E 3 HOH A 11 422 422 HOH HOH . E 3 HOH A 12 423 423 HOH HOH . E 3 HOH A 13 425 425 HOH HOH . E 3 HOH A 14 426 426 HOH HOH . E 3 HOH A 15 427 427 HOH HOH . E 3 HOH A 16 429 429 HOH HOH . E 3 HOH A 17 430 430 HOH HOH . E 3 HOH A 18 433 433 HOH HOH . E 3 HOH A 19 436 436 HOH HOH . E 3 HOH A 20 437 437 HOH HOH . E 3 HOH A 21 438 438 HOH HOH . E 3 HOH A 22 439 439 HOH HOH . E 3 HOH A 23 441 441 HOH HOH . E 3 HOH A 24 443 443 HOH HOH . E 3 HOH A 25 448 448 HOH HOH . E 3 HOH A 26 455 455 HOH HOH . E 3 HOH A 27 456 456 HOH HOH . E 3 HOH A 28 457 457 HOH HOH . E 3 HOH A 29 459 459 HOH HOH . E 3 HOH A 30 460 460 HOH HOH . E 3 HOH A 31 462 462 HOH HOH . E 3 HOH A 32 466 466 HOH HOH . E 3 HOH A 33 467 467 HOH HOH . E 3 HOH A 34 471 471 HOH HOH . E 3 HOH A 35 472 472 HOH HOH . E 3 HOH A 36 473 473 HOH HOH . E 3 HOH A 37 474 474 HOH HOH . E 3 HOH A 38 476 476 HOH HOH . E 3 HOH A 39 477 477 HOH HOH . E 3 HOH A 40 483 483 HOH HOH . E 3 HOH A 41 486 486 HOH HOH . E 3 HOH A 42 488 488 HOH HOH . E 3 HOH A 43 491 491 HOH HOH . E 3 HOH A 44 492 492 HOH HOH . E 3 HOH A 45 496 496 HOH HOH . E 3 HOH A 46 497 497 HOH HOH . E 3 HOH A 47 500 500 HOH HOH . E 3 HOH A 48 504 504 HOH HOH . E 3 HOH A 49 505 505 HOH HOH . E 3 HOH A 50 507 507 HOH HOH . E 3 HOH A 51 510 510 HOH HOH . E 3 HOH A 52 511 511 HOH HOH . F 3 HOH B 1 401 401 HOH HOH . F 3 HOH B 2 402 402 HOH HOH . F 3 HOH B 3 405 405 HOH HOH . F 3 HOH B 4 408 408 HOH HOH . F 3 HOH B 5 409 409 HOH HOH . F 3 HOH B 6 410 410 HOH HOH . F 3 HOH B 7 413 413 HOH HOH . F 3 HOH B 8 414 414 HOH HOH . F 3 HOH B 9 415 415 HOH HOH . F 3 HOH B 10 418 418 HOH HOH . F 3 HOH B 11 421 421 HOH HOH . F 3 HOH B 12 424 424 HOH HOH . F 3 HOH B 13 428 428 HOH HOH . F 3 HOH B 14 431 431 HOH HOH . F 3 HOH B 15 432 432 HOH HOH . F 3 HOH B 16 434 434 HOH HOH . F 3 HOH B 17 435 435 HOH HOH . F 3 HOH B 18 440 440 HOH HOH . F 3 HOH B 19 442 442 HOH HOH . F 3 HOH B 20 444 444 HOH HOH . F 3 HOH B 21 445 445 HOH HOH . F 3 HOH B 22 446 446 HOH HOH . F 3 HOH B 23 447 447 HOH HOH . F 3 HOH B 24 449 449 HOH HOH . F 3 HOH B 25 450 450 HOH HOH . F 3 HOH B 26 451 451 HOH HOH . F 3 HOH B 27 452 452 HOH HOH . F 3 HOH B 28 453 453 HOH HOH . F 3 HOH B 29 454 454 HOH HOH . F 3 HOH B 30 458 458 HOH HOH . F 3 HOH B 31 461 461 HOH HOH . F 3 HOH B 32 463 463 HOH HOH . F 3 HOH B 33 464 464 HOH HOH . F 3 HOH B 34 465 465 HOH HOH . F 3 HOH B 35 468 468 HOH HOH . F 3 HOH B 36 469 469 HOH HOH . F 3 HOH B 37 470 470 HOH HOH . F 3 HOH B 38 475 475 HOH HOH . F 3 HOH B 39 478 478 HOH HOH . F 3 HOH B 40 479 479 HOH HOH . F 3 HOH B 41 480 480 HOH HOH . F 3 HOH B 42 481 481 HOH HOH . F 3 HOH B 43 482 482 HOH HOH . F 3 HOH B 44 484 484 HOH HOH . F 3 HOH B 45 485 485 HOH HOH . F 3 HOH B 46 487 487 HOH HOH . F 3 HOH B 47 489 489 HOH HOH . F 3 HOH B 48 490 490 HOH HOH . F 3 HOH B 49 493 493 HOH HOH . F 3 HOH B 50 494 494 HOH HOH . F 3 HOH B 51 495 495 HOH HOH . F 3 HOH B 52 498 498 HOH HOH . F 3 HOH B 53 499 499 HOH HOH . F 3 HOH B 54 501 501 HOH HOH . F 3 HOH B 55 502 502 HOH HOH . F 3 HOH B 56 503 503 HOH HOH . F 3 HOH B 57 506 506 HOH HOH . F 3 HOH B 58 508 508 HOH HOH . F 3 HOH B 59 509 509 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DZF . . . D 2 9.683 20.912 68.901 1 32.68 ? N1 DZF 187 B 1 HETATM 2 C C2 DZF . . . D 2 10.174 21.046 70.146 1 34.81 ? C2 DZF 187 B 1 HETATM 3 N NA2 DZF . . . D 2 10.855 20.173 70.788 1 25.19 ? NA2 DZF 187 B 1 HETATM 4 N N3 DZF . . . D 2 9.957 22.287 70.812 1 34.34 ? N3 DZF 187 B 1 HETATM 5 C C4 DZF . . . D 2 9.281 23.326 70.266 1 27.45 ? C4 DZF 187 B 1 HETATM 6 O O4 DZF . . . D 2 9.12 24.376 70.945 1 34.1 ? O4 DZF 187 B 1 HETATM 7 C C4A DZF . . . D 2 8.86 23.151 68.854 1 31.77 ? C4A DZF 187 B 1 HETATM 8 C C5 DZF . . . D 2 8.241 24.201 68.243 1 32.47 ? C5 DZF 187 B 1 HETATM 9 C C6 DZF . . . D 2 7.845 23.998 66.969 1 29.96 ? C6 DZF 187 B 1 HETATM 10 C C7 DZF . . . D 2 8.104 22.707 66.403 1 33.06 ? C7 DZF 187 B 1 HETATM 11 N N8 DZF . . . D 2 8.708 21.692 66.943 1 30.34 ? N8 DZF 187 B 1 HETATM 12 C C8A DZF . . . D 2 9.083 21.968 68.241 1 30.14 ? C8A DZF 187 B 1 HETATM 13 C C9 DZF . . . D 2 7.139 25.084 66.263 1 28.15 ? C9 DZF 187 B 1 HETATM 14 N N10 DZF . . . D 2 7.133 26.439 66.859 1 33.56 ? N10 DZF 187 B 1 HETATM 15 C C11 DZF . . . D 2 10.391 28.925 67.964 1 33.28 ? C11 DZF 187 B 1 HETATM 16 C C12 DZF . . . D 2 10.575 27.661 67.39 1 39.08 ? C12 DZF 187 B 1 HETATM 17 C C13 DZF . . . D 2 9.524 26.804 66.999 1 31.56 ? C13 DZF 187 B 1 HETATM 18 C C14 DZF . . . D 2 8.256 27.215 67.205 1 34.15 ? C14 DZF 187 B 1 HETATM 19 C C15 DZF . . . D 2 7.987 28.502 67.767 1 32.74 ? C15 DZF 187 B 1 HETATM 20 C C16 DZF . . . D 2 9.049 29.323 68.105 1 34.81 ? C16 DZF 187 B 1 HETATM 21 C C DZF . . . D 2 11.588 29.692 68.321 1 28.44 ? C DZF 187 B 1 HETATM 22 O O DZF . . . D 2 11.539 30.852 68.745 1 31.6 ? O DZF 187 B 1 HETATM 23 N N DZF . . . D 2 12.791 29.249 68.236 1 25.16 ? N DZF 187 B 1 HETATM 24 C CA DZF . . . D 2 14.065 29.945 68.449 1 35.71 ? CA DZF 187 B 1 HETATM 25 C CB DZF . . . D 2 14.468 30.351 69.86 1 33.88 ? CB DZF 187 B 1 HETATM 26 C CG DZF . . . D 2 14.472 29.081 70.881 1 48.4 ? CG DZF 187 B 1 HETATM 27 C CD DZF . . . D 2 14.913 29.657 72.286 1 58.88 ? CD DZF 187 B 1 HETATM 28 O OE1 DZF . . . D 2 14.361 30.766 72.485 1 57.52 ? OE1 DZF 187 B 1 HETATM 29 O OE2 DZF . . . D 2 15.733 29.05 73.016 1 66.98 ? OE2 DZF 187 B 1 HETATM 30 C CT DZF . . . D 2 15.274 29.224 67.782 1 35.51 ? CT DZF 187 B 1 HETATM 31 O O1 DZF . . . D 2 16.365 29.857 67.648 1 29.92 ? O1 DZF 187 B 1 HETATM 32 O O2 DZF . . . D 2 15.057 28.038 67.499 1 24.41 ? O2 DZF 187 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #