data_2DHN # _model_server_result.job_id RgXIPgS-i-fmtRDluYreJQ _model_server_result.datetime_utc '2024-11-26 17:56:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dhn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":122}' # _entry.id 2DHN # _exptl.entry_id 2DHN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.179 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DHN _cell.length_a 62.2 _cell.length_b 62.2 _cell.length_c 123.8 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DHN _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 62.2 62.2 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 62.2 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 62.2 0 5 'crystal symmetry operation' 5_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 62.2 0 123.8 6 'crystal symmetry operation' 6_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 62.2 123.8 7 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 123.8 8 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 62.2 62.2 123.8 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H9 N5 O2' _chem_comp.formula_weight 195.179 _chem_comp.id PH2 _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PH2 doub 224 n n N1 C9 PH2 sing 225 n n C2 C3 PH2 sing 226 n n C2 C11 PH2 sing 227 n n C3 N4 PH2 sing 228 n n C3 H31 PH2 sing 229 n n C3 H32 PH2 sing 230 n n N4 C10 PH2 sing 231 n n N4 HN4 PH2 sing 232 n n N5 C6 PH2 doub 233 n y N5 C10 PH2 sing 234 n y C6 N6 PH2 sing 235 n n C6 N7 PH2 sing 236 n y N6 HN61 PH2 sing 237 n n N6 HN62 PH2 sing 238 n n N7 C8 PH2 sing 239 n y N7 HN7 PH2 sing 240 n n C8 O8 PH2 doub 241 n n C8 C9 PH2 sing 242 n y C9 C10 PH2 doub 243 n y C11 O4 PH2 sing 244 n n C11 H111 PH2 sing 245 n n C11 H112 PH2 sing 246 n n O4 HO4 PH2 sing 247 n n # _atom_sites.entry_id 2DHN _atom_sites.fract_transf_matrix[1][1] 0.016077 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016077 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PH2 A 1 122 1 PH2 HHP . C 3 HOH A 1 123 1 HOH HOH . C 3 HOH A 2 124 2 HOH HOH . C 3 HOH A 3 125 3 HOH HOH . C 3 HOH A 4 126 4 HOH HOH . C 3 HOH A 5 127 5 HOH HOH . C 3 HOH A 6 128 6 HOH HOH . C 3 HOH A 7 129 7 HOH HOH . C 3 HOH A 8 130 8 HOH HOH . C 3 HOH A 9 131 9 HOH HOH . C 3 HOH A 10 132 10 HOH HOH . C 3 HOH A 11 133 11 HOH HOH . C 3 HOH A 12 134 12 HOH HOH . C 3 HOH A 13 135 13 HOH HOH . C 3 HOH A 14 136 14 HOH HOH . C 3 HOH A 15 137 15 HOH HOH . C 3 HOH A 16 138 16 HOH HOH . C 3 HOH A 17 139 17 HOH HOH . C 3 HOH A 18 140 18 HOH HOH . C 3 HOH A 19 141 19 HOH HOH . C 3 HOH A 20 142 20 HOH HOH . C 3 HOH A 21 143 21 HOH HOH . C 3 HOH A 22 144 22 HOH HOH . C 3 HOH A 23 145 23 HOH HOH . C 3 HOH A 24 146 24 HOH HOH . C 3 HOH A 25 147 25 HOH HOH . C 3 HOH A 26 148 26 HOH HOH . C 3 HOH A 27 149 27 HOH HOH . C 3 HOH A 28 150 28 HOH HOH . C 3 HOH A 29 151 29 HOH HOH . C 3 HOH A 30 152 30 HOH HOH . C 3 HOH A 31 153 31 HOH HOH . C 3 HOH A 32 154 32 HOH HOH . C 3 HOH A 33 155 33 HOH HOH . C 3 HOH A 34 156 34 HOH HOH . C 3 HOH A 35 157 35 HOH HOH . C 3 HOH A 36 158 36 HOH HOH . C 3 HOH A 37 159 37 HOH HOH . C 3 HOH A 38 160 38 HOH HOH . C 3 HOH A 39 161 39 HOH HOH . C 3 HOH A 40 162 40 HOH HOH . C 3 HOH A 41 163 41 HOH HOH . C 3 HOH A 42 164 42 HOH HOH . C 3 HOH A 43 165 43 HOH HOH . C 3 HOH A 44 166 44 HOH HOH . C 3 HOH A 45 167 45 HOH HOH . C 3 HOH A 46 168 46 HOH HOH . C 3 HOH A 47 169 47 HOH HOH . C 3 HOH A 48 170 48 HOH HOH . C 3 HOH A 49 171 49 HOH HOH . C 3 HOH A 50 172 50 HOH HOH . C 3 HOH A 51 173 51 HOH HOH . C 3 HOH A 52 174 52 HOH HOH . C 3 HOH A 53 175 53 HOH HOH . C 3 HOH A 54 176 54 HOH HOH . C 3 HOH A 55 177 55 HOH HOH . C 3 HOH A 56 178 56 HOH HOH . C 3 HOH A 57 179 57 HOH HOH . C 3 HOH A 58 180 58 HOH HOH . C 3 HOH A 59 181 59 HOH HOH . C 3 HOH A 60 182 60 HOH HOH . C 3 HOH A 61 183 61 HOH HOH . C 3 HOH A 62 184 62 HOH HOH . C 3 HOH A 63 185 63 HOH HOH . C 3 HOH A 64 186 64 HOH HOH . C 3 HOH A 65 187 65 HOH HOH . C 3 HOH A 66 188 66 HOH HOH . C 3 HOH A 67 189 67 HOH HOH . C 3 HOH A 68 190 68 HOH HOH . C 3 HOH A 69 191 69 HOH HOH . C 3 HOH A 70 192 70 HOH HOH . C 3 HOH A 71 193 71 HOH HOH . C 3 HOH A 72 194 72 HOH HOH . C 3 HOH A 73 195 73 HOH HOH . C 3 HOH A 74 196 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PH2 . . . B 2 48.543 47.581 74.632 1 24.94 ? N1 PH2 122 A 1 HETATM 2 C C2 PH2 . . . B 2 49.588 47.459 73.884 1 24.3 ? C2 PH2 122 A 1 HETATM 3 C C3 PH2 . . . B 2 50.572 46.517 74.087 1 24.13 ? C3 PH2 122 A 1 HETATM 4 N N4 PH2 . . . B 2 50.394 45.678 75.148 1 25.86 ? N4 PH2 122 A 1 HETATM 5 N N5 PH2 . . . B 2 49.113 44.872 77.105 1 31.53 ? N5 PH2 122 A 1 HETATM 6 C C6 PH2 . . . B 2 48.004 45.029 77.851 1 26.75 ? C6 PH2 122 A 1 HETATM 7 N N6 PH2 . . . B 2 47.628 44.253 78.932 1 22.26 ? N6 PH2 122 A 1 HETATM 8 N N7 PH2 . . . B 2 47.037 46.031 77.556 1 30.11 ? N7 PH2 122 A 1 HETATM 9 C C8 PH2 . . . B 2 47.17 46.938 76.445 1 32.09 ? C8 PH2 122 A 1 HETATM 10 O O8 PH2 . . . B 2 46.32 47.818 76.15 1 27.39 ? O8 PH2 122 A 1 HETATM 11 C C9 PH2 . . . B 2 48.367 46.768 75.662 1 30.03 ? C9 PH2 122 A 1 HETATM 12 C C10 PH2 . . . B 2 49.276 45.743 76.024 1 30.83 ? C10 PH2 122 A 1 HETATM 13 C C11 PH2 . . . B 2 49.703 48.368 72.779 1 35.9 ? C11 PH2 122 A 1 HETATM 14 O O4 PH2 . . . B 2 49.738 47.594 71.602 1 38.81 ? O4 PH2 122 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #