data_2DIJ # _model_server_result.job_id ehvSThFpqXGeQoi2SfeyiA _model_server_result.datetime_utc '2025-02-22 23:40:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2dij # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":689}' # _entry.id 2DIJ # _exptl.entry_id 2DIJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2DIJ _cell.length_a 119.964 _cell.length_b 111.282 _cell.length_c 67.977 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DIJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GLC GLC C1 O1 . O4 HO4 . sing 2 ? 3 2 1 GLC GLC C1 O1 . O4 HO4 . sing 3 ? 3 3 2 GLC GLC C1 O1 . O4 HO4 . sing 4 ? 4 2 1 GLC GLC C1 O1 . O4 HO4 . sing 5 ? 4 3 2 GLC GLC C1 O1 . O4 HO4 . sing 6 ? 4 4 3 GLC GLC C1 O1 . O4 HO4 . sing 7 ? 4 5 4 GLC GLC C1 O1 . O4 HO4 . sing 8 ? 5 2 1 G6D GLC C1 O1 . O4 HO4 . sing 9 ? 6 2 1 GLC GLC C1 O1 . O4 HO4 . sing 10 ? 6 3 2 GLC GLC C1 O1 . O4 HO4 . sing 11 ? 6 4 3 GLC GLC C1 O1 . O4 HO4 . sing 12 ? 6 5 4 GLC GLC C1 O1 . O4 HO4 . sing 13 ? 6 6 5 GLC GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC ? 690 GLC 2 n B GLC 2 B 2 GLC ? 691 GLC 3 n C GLC 1 C 1 GLC ? 693 GLC 3 n C GLC 2 C 2 GLC ? 694 GLC 3 n C GLC 3 C 3 GLC ? 695 GLC 4 n D GLC 1 D 1 GLC ? 697 GLC 4 n D GLC 2 D 2 GLC ? 698 GLC 4 n D GLC 3 D 3 GLC ? 699 GLC 4 n D GLC 4 D 4 GLC ? 700 GLC 4 n D GLC 5 D 5 GLC ? 701 GLC 5 n E GLC 1 E 1 GLC ? 703 GLC 5 n E G6D 2 E 2 G6D ? 704 GLD 6 n F GLC 1 F 1 GLC ? 706 GLC 6 n F GLC 2 F 2 GLC ? 707 GLC 6 n F GLC 3 F 3 GLC ? 708 GLC 6 n F GLC 4 F 4 GLC ? 709 GLC 6 n F GLC 5 F 5 GLC ? 710 GLC 6 n F GLC 6 F 6 GLC ? 711 GLC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 43 1_555 A SG CYS 50 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale1 I N1 ADH . A ADH 705 1_555 E C4 G6D . E G6D 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.568 ? covale ? covale2 I C4 ADH . A ADH 705 1_555 F O1 GLC . F GLC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 B O4 GLC . B GLC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 sing covale ? covale4 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 sing covale ? covale5 C O4 GLC . C GLC 2 1_555 C C1 GLC . C GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 sing covale ? covale6 D O4 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 sing covale ? covale7 D O4 GLC . D GLC 2 1_555 D C1 GLC . D GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 sing covale ? covale8 D O4 GLC . D GLC 3 1_555 D C1 GLC . D GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 sing covale ? covale9 D O4 GLC . D GLC 4 1_555 D C1 GLC . D GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 sing covale ? covale10 E O4 GLC . E GLC 1 1_555 E C1 G6D . E G6D 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 sing covale ? covale11 F O4 GLC . F GLC 1 1_555 F C1 GLC . F GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 sing covale ? covale12 F O4 GLC . F GLC 2 1_555 F C1 GLC . F GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 sing covale ? covale13 F O4 GLC . F GLC 3 1_555 F C1 GLC . F GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 sing covale ? covale14 F O4 GLC . F GLC 4 1_555 F C1 GLC . F GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 sing covale ? covale15 F O4 GLC . F GLC 5 1_555 F C1 GLC . F GLC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 sing metalc ? metalc1 A OD1 ASP 27 A ASP 27 1_555 G CA CA . A CA 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc2 A O ASN 29 A ASN 29 1_555 G CA CA . A CA 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc3 A OD1 ASN 32 A ASN 32 1_555 G CA CA . A CA 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc4 A OD1 ASN 33 A ASN 33 1_555 G CA CA . A CA 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc5 A O GLY 51 A GLY 51 1_555 G CA CA . A CA 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc6 A OD2 ASP 53 A ASP 53 1_555 G CA CA . A CA 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc7 A OD1 ASN 139 A ASN 139 1_555 H CA CA . A CA 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc8 A O ILE 190 A ILE 190 1_555 H CA CA . A CA 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc9 A OD2 ASP 199 A ASP 199 1_555 H CA CA . A CA 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc10 A OD1 ASP 199 A ASP 199 1_555 H CA CA . A CA 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc11 A O HIS 233 A HIS 233 1_555 H CA CA . A CA 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc12 G CA CA . A CA 688 1_555 J O HOH . A HOH 764 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc13 H CA CA . A CA 689 1_555 J O HOH . A HOH 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc14 H CA CA . A CA 689 1_555 J O HOH . A HOH 779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2DIJ _atom_sites.fract_transf_matrix[1][1] 0.008336 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008986 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 CA A 1 688 688 CA CA . H 7 CA A 1 689 689 CA CA . I 8 ADH A 1 705 705 ADH ACI . J 9 HOH A 1 713 713 HOH HOH . J 9 HOH A 2 714 714 HOH HOH . J 9 HOH A 3 715 715 HOH HOH . J 9 HOH A 4 716 716 HOH HOH . J 9 HOH A 5 717 717 HOH HOH . J 9 HOH A 6 718 718 HOH HOH . J 9 HOH A 7 719 719 HOH HOH . J 9 HOH A 8 720 720 HOH HOH . J 9 HOH A 9 721 721 HOH HOH . J 9 HOH A 10 722 722 HOH HOH . J 9 HOH A 11 723 723 HOH HOH . J 9 HOH A 12 724 724 HOH HOH . J 9 HOH A 13 725 725 HOH HOH . J 9 HOH A 14 726 726 HOH HOH . J 9 HOH A 15 727 727 HOH HOH . J 9 HOH A 16 728 728 HOH HOH . J 9 HOH A 17 729 729 HOH HOH . J 9 HOH A 18 730 730 HOH HOH . J 9 HOH A 19 731 731 HOH HOH . J 9 HOH A 20 732 732 HOH HOH . J 9 HOH A 21 733 733 HOH HOH . J 9 HOH A 22 734 734 HOH HOH . J 9 HOH A 23 735 735 HOH HOH . J 9 HOH A 24 736 736 HOH HOH . J 9 HOH A 25 737 737 HOH HOH . J 9 HOH A 26 738 738 HOH HOH . J 9 HOH A 27 739 739 HOH HOH . J 9 HOH A 28 740 740 HOH HOH . J 9 HOH A 29 741 741 HOH HOH . J 9 HOH A 30 742 742 HOH HOH . J 9 HOH A 31 743 743 HOH HOH . J 9 HOH A 32 744 744 HOH HOH . J 9 HOH A 33 745 745 HOH HOH . J 9 HOH A 34 746 746 HOH HOH . J 9 HOH A 35 747 747 HOH HOH . J 9 HOH A 36 748 748 HOH HOH . J 9 HOH A 37 749 749 HOH HOH . J 9 HOH A 38 750 750 HOH HOH . J 9 HOH A 39 751 751 HOH HOH . J 9 HOH A 40 752 752 HOH HOH . J 9 HOH A 41 753 753 HOH HOH . J 9 HOH A 42 754 754 HOH HOH . J 9 HOH A 43 755 755 HOH HOH . J 9 HOH A 44 756 756 HOH HOH . J 9 HOH A 45 757 757 HOH HOH . J 9 HOH A 46 758 758 HOH HOH . J 9 HOH A 47 759 759 HOH HOH . J 9 HOH A 48 760 760 HOH HOH . J 9 HOH A 49 761 761 HOH HOH . J 9 HOH A 50 762 762 HOH HOH . J 9 HOH A 51 763 763 HOH HOH . J 9 HOH A 52 764 764 HOH HOH . J 9 HOH A 53 765 765 HOH HOH . J 9 HOH A 54 766 766 HOH HOH . J 9 HOH A 55 767 767 HOH HOH . J 9 HOH A 56 768 768 HOH HOH . J 9 HOH A 57 769 769 HOH HOH . J 9 HOH A 58 770 770 HOH HOH . J 9 HOH A 59 771 771 HOH HOH . J 9 HOH A 60 772 772 HOH HOH . J 9 HOH A 61 773 773 HOH HOH . J 9 HOH A 62 774 774 HOH HOH . J 9 HOH A 63 775 775 HOH HOH . J 9 HOH A 64 776 776 HOH HOH . J 9 HOH A 65 777 777 HOH HOH . J 9 HOH A 66 778 778 HOH HOH . J 9 HOH A 67 779 779 HOH HOH . J 9 HOH A 68 780 780 HOH HOH . J 9 HOH A 69 781 781 HOH HOH . J 9 HOH A 70 782 782 HOH HOH . J 9 HOH A 71 783 783 HOH HOH . J 9 HOH A 72 784 784 HOH HOH . J 9 HOH A 73 785 785 HOH HOH . J 9 HOH A 74 786 786 HOH HOH . J 9 HOH A 75 787 787 HOH HOH . J 9 HOH A 76 788 788 HOH HOH . J 9 HOH A 77 789 789 HOH HOH . J 9 HOH A 78 790 790 HOH HOH . J 9 HOH A 79 791 791 HOH HOH . J 9 HOH A 80 792 792 HOH HOH . J 9 HOH A 81 793 793 HOH HOH . J 9 HOH A 82 794 794 HOH HOH . J 9 HOH A 83 795 795 HOH HOH . J 9 HOH A 84 796 796 HOH HOH . J 9 HOH A 85 797 797 HOH HOH . J 9 HOH A 86 798 798 HOH HOH . J 9 HOH A 87 799 799 HOH HOH . J 9 HOH A 88 800 800 HOH HOH . J 9 HOH A 89 801 801 HOH HOH . J 9 HOH A 90 802 802 HOH HOH . J 9 HOH A 91 803 803 HOH HOH . J 9 HOH A 92 804 804 HOH HOH . J 9 HOH A 93 805 805 HOH HOH . J 9 HOH A 94 806 806 HOH HOH . J 9 HOH A 95 807 807 HOH HOH . J 9 HOH A 96 808 808 HOH HOH . J 9 HOH A 97 809 809 HOH HOH . J 9 HOH A 98 810 810 HOH HOH . J 9 HOH A 99 811 811 HOH HOH . J 9 HOH A 100 812 812 HOH HOH . J 9 HOH A 101 813 813 HOH HOH . J 9 HOH A 102 814 814 HOH HOH . J 9 HOH A 103 815 815 HOH HOH . J 9 HOH A 104 816 816 HOH HOH . J 9 HOH A 105 817 817 HOH HOH . J 9 HOH A 106 818 818 HOH HOH . J 9 HOH A 107 819 819 HOH HOH . J 9 HOH A 108 820 820 HOH HOH . J 9 HOH A 109 821 821 HOH HOH . J 9 HOH A 110 822 822 HOH HOH . J 9 HOH A 111 823 823 HOH HOH . J 9 HOH A 112 824 824 HOH HOH . J 9 HOH A 113 825 825 HOH HOH . J 9 HOH A 114 826 826 HOH HOH . J 9 HOH A 115 827 827 HOH HOH . J 9 HOH A 116 828 828 HOH HOH . J 9 HOH A 117 829 829 HOH HOH . J 9 HOH A 118 830 830 HOH HOH . J 9 HOH A 119 831 831 HOH HOH . J 9 HOH A 120 832 832 HOH HOH . J 9 HOH A 121 833 833 HOH HOH . J 9 HOH A 122 834 834 HOH HOH . J 9 HOH A 123 835 835 HOH HOH . J 9 HOH A 124 836 836 HOH HOH . J 9 HOH A 125 837 837 HOH HOH . J 9 HOH A 126 838 838 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 7 _atom_site.Cartn_x 51.685 _atom_site.Cartn_y 79.191 _atom_site.Cartn_z 52.383 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.8 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 689 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #